Wall clock time and date at job start Tue Mar 31 2020 07:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47047 * 2 1 4 4 C 1.52999 * 109.47331 * 239.99482 * 2 1 3 5 5 S 1.81403 * 109.46954 * 119.99587 * 2 1 3 6 6 O 1.42099 * 108.57827 * 305.51606 * 5 2 1 7 7 O 1.42092 * 108.58055 * 174.49088 * 5 2 1 8 8 C 1.81401 * 101.92210 * 60.00016 * 5 2 1 9 9 C 1.50696 * 109.47143 * 180.02562 * 8 5 2 10 10 O 1.21290 * 120.00012 * 0.02562 * 9 8 5 11 11 N 1.34777 * 119.99736 * 180.02562 * 9 8 5 12 12 C 1.40159 * 119.99983 * 179.97438 * 11 9 8 13 13 C 1.40409 * 125.97033 * 0.02562 * 12 11 9 14 14 C 1.35241 * 107.86602 * 179.73843 * 13 12 11 15 15 N 1.34966 * 107.86079 * 0.39163 * 14 13 12 16 16 C 1.46500 * 125.97782 * 179.87198 * 15 14 13 17 17 C 1.50706 * 109.47299 * 124.71059 * 16 15 14 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72576 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72423 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72459 * 21 19 17 25 25 N 1.31219 * 125.97718 * 179.97438 * 12 11 9 26 26 H 1.08997 * 109.47189 * 300.00737 * 1 2 3 27 27 H 1.09004 * 109.46841 * 60.00833 * 1 2 3 28 28 H 1.08999 * 109.46902 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47252 * 179.97438 * 3 2 1 30 30 H 1.09007 * 109.47207 * 299.99765 * 3 2 1 31 31 H 1.09000 * 109.47378 * 59.99213 * 3 2 1 32 32 H 1.08996 * 109.47406 * 300.00116 * 4 2 1 33 33 H 1.08999 * 109.46998 * 60.00166 * 4 2 1 34 34 H 1.09000 * 109.46974 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.46832 * 59.99944 * 8 5 2 36 36 H 1.09006 * 109.47179 * 300.00473 * 8 5 2 37 37 H 0.97003 * 120.00166 * 0.02562 * 11 9 8 38 38 H 1.08002 * 126.06850 * 0.02562 * 13 12 11 39 39 H 1.08003 * 126.07024 * 180.26845 * 14 13 12 40 40 H 1.09004 * 109.47078 * 4.71821 * 16 15 14 41 41 H 1.08993 * 109.47364 * 244.71592 * 16 15 14 42 42 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 16 2.1347 -0.8550 1.4812 6 8 1.5478 -0.2493 2.6249 7 8 3.5495 -0.9570 1.3993 8 6 1.4229 -2.5108 1.2749 9 6 1.8270 -3.3797 2.4379 10 8 2.5259 -2.9265 3.3195 11 7 1.4116 -4.6605 2.4984 12 6 1.7878 -5.4689 3.5798 13 6 2.5893 -5.0759 4.6637 14 6 2.7150 -6.1369 5.4929 15 7 2.0288 -7.1667 4.9543 16 6 1.9034 -8.5099 5.5257 17 6 0.4448 -8.8594 5.6722 18 1 -0.3130 -8.1519 5.3695 19 6 0.0777 -10.0822 6.1926 20 7 1.0005 -10.9458 6.5563 21 14 -1.7303 -10.5157 6.3735 22 1 -2.2104 -10.0875 7.7119 23 1 -2.5137 -9.8204 5.3208 24 1 -1.9040 -11.9836 6.2315 25 7 1.4520 -6.7249 3.7568 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6768 -1.7490 -1.2491 33 1 1.6768 -0.2076 -2.1392 34 1 3.1301 -0.7209 -1.2493 35 1 1.7894 -2.9508 0.3475 36 1 0.3360 -2.4369 1.2373 37 1 0.8529 -5.0230 1.7932 38 1 3.0240 -4.0983 4.8115 39 1 3.2682 -6.1571 6.4203 40 1 2.3829 -8.5346 6.5043 41 1 2.3856 -9.2316 4.8665 42 1 1.9394 -10.7209 6.4621 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153149678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:47 Heat of formation + Delta-G solvation = -27.112476 kcal Electronic energy + Delta-G solvation = -25814.216801 eV Core-core repulsion = 21923.965769 eV Total energy + Delta-G solvation = -3890.251032 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -40.90960 -39.54159 -37.28386 -37.14975 -36.24388 -35.08819 -33.76875 -31.66986 -30.36487 -29.46410 -28.04296 -27.89229 -26.25013 -23.33414 -22.39204 -21.90270 -20.60859 -19.83193 -18.74552 -17.71931 -17.23785 -17.21561 -16.56397 -16.45622 -16.23511 -15.58764 -15.10460 -14.80403 -14.70750 -14.28097 -14.11796 -13.82620 -13.76784 -13.38775 -13.21181 -12.96137 -12.87304 -12.51794 -12.43940 -12.29743 -12.27765 -12.15380 -11.91683 -11.86373 -11.77920 -11.39703 -11.20155 -10.86698 -10.62437 -10.53532 -10.34685 -10.20357 -9.90610 -9.05750 -8.61116 -8.30951 -7.63214 -6.61470 -4.35763 -0.49513 1.94712 2.32857 2.41877 2.73442 3.30462 3.34732 3.38349 3.47437 3.54800 3.57115 3.66042 3.90139 3.94469 4.20391 4.29375 4.38082 4.48855 4.62794 4.82762 4.92461 5.03079 5.03990 5.08755 5.12234 5.15000 5.36443 5.42563 5.50918 5.52639 5.61094 6.02720 6.31481 6.36485 6.52968 6.70071 7.15524 7.31259 7.61939 7.76617 7.87168 8.30347 8.44425 8.57494 9.32515 10.76277 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.027569 B = 0.002364 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.372286 B =11839.714709 C =12320.904387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.546 4.546 3 C -0.138 4.138 4 C -0.144 4.144 5 S 2.455 3.545 6 O -0.914 6.914 7 O -0.915 6.915 8 C -0.662 4.662 9 C 0.549 3.451 10 O -0.507 6.507 11 N -0.617 5.617 12 C 0.252 3.748 13 C -0.284 4.284 14 C 0.054 3.946 15 N -0.315 5.315 16 C 0.248 3.752 17 C -0.609 4.609 18 H 0.064 0.936 19 C 0.023 3.977 20 N -0.904 5.904 21 Si 1.080 2.920 22 H -0.285 1.285 23 H -0.287 1.287 24 H -0.281 1.281 25 N -0.296 5.296 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.164 0.836 36 H 0.164 0.836 37 H 0.415 0.585 38 H 0.164 0.836 39 H 0.171 0.829 40 H 0.048 0.952 41 H 0.036 0.964 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.114 22.271 -17.283 28.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.636 4.636 3 C -0.196 4.196 4 C -0.202 4.202 5 S 2.631 3.369 6 O -0.911 6.911 7 O -0.912 6.912 8 C -0.788 4.788 9 C 0.332 3.668 10 O -0.381 6.381 11 N -0.264 5.264 12 C -0.001 4.001 13 C -0.315 4.315 14 C -0.096 4.096 15 N -0.097 5.097 16 C 0.130 3.870 17 C -0.647 4.647 18 H 0.082 0.918 19 C -0.182 4.182 20 N -0.540 5.540 21 Si 0.907 3.093 22 H -0.212 1.212 23 H -0.213 1.213 24 H -0.207 1.207 25 N -0.127 5.127 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.182 0.818 36 H 0.182 0.818 37 H 0.251 0.749 38 H 0.181 0.819 39 H 0.188 0.812 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.771 20.569 -15.899 26.008 hybrid contribution 0.571 1.232 -1.323 1.896 sum -0.199 21.801 -17.221 27.783 Atomic orbital electron populations 1.21863 0.89392 1.03697 1.05254 1.29888 1.06719 1.09194 1.17811 1.21719 1.02238 0.90871 1.04754 1.21858 1.02755 0.99903 0.95669 1.07696 0.76101 0.76355 0.76743 1.93581 1.79255 1.73450 1.44798 1.93575 1.26213 1.85031 1.86341 1.30964 1.16412 1.24263 1.07184 1.18984 0.80333 0.81702 0.85758 1.90812 1.36373 1.72421 1.38516 1.42165 1.51296 1.09853 1.23050 1.19060 0.99821 0.90893 0.90318 1.21581 1.11281 1.01976 0.96633 1.22591 0.98870 0.88130 1.00022 1.48830 1.34952 1.11515 1.14376 1.19802 1.00077 0.74138 0.92958 1.22122 0.90468 1.04965 1.47138 0.91794 1.25934 1.07160 0.92097 0.93005 1.70822 1.01872 1.36858 1.44429 0.83377 0.73113 0.76245 0.76589 1.21167 1.21267 1.20692 1.77341 1.22348 1.09178 1.03876 0.90111 0.89948 0.91175 0.90644 0.89812 0.90632 0.91186 0.89950 0.90139 0.81818 0.81782 0.74892 0.81881 0.81197 0.93472 0.94659 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.57 8.22 37.16 0.31 -0.26 16 2 C -0.55 -3.05 0.87 -90.62 -0.08 -3.13 16 3 C -0.14 -0.74 8.48 37.16 0.32 -0.43 16 4 C -0.14 -0.55 8.22 37.16 0.31 -0.24 16 5 S 2.46 25.42 3.01 -107.50 -0.32 25.09 16 6 O -0.91 -12.78 17.76 -59.55 -1.06 -13.84 16 7 O -0.91 -12.65 17.76 -59.51 -1.06 -13.71 16 8 C -0.66 -5.29 5.38 36.00 0.19 -5.10 16 9 C 0.55 7.82 7.82 -10.99 -0.09 7.73 16 10 O -0.51 -9.25 12.75 2.54 0.03 -9.22 16 11 N -0.62 -9.23 5.45 -11.13 -0.06 -9.29 16 12 C 0.25 5.06 8.11 -154.39 -1.25 3.81 16 13 C -0.28 -5.72 9.61 -39.83 -0.38 -6.10 16 14 C 0.05 1.08 11.44 -17.24 -0.20 0.88 16 15 N -0.31 -7.34 3.67 -62.56 -0.23 -7.57 16 16 C 0.25 6.24 5.57 -5.19 -0.03 6.21 16 17 C -0.61 -17.00 9.24 -34.44 -0.32 -17.32 16 18 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 19 C 0.02 0.63 5.46 -17.82 -0.10 0.54 16 20 N -0.90 -26.18 13.65 55.43 0.76 -25.43 16 21 Si 1.08 24.78 29.90 -169.99 -5.08 19.70 16 22 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 N -0.30 -6.80 12.42 31.44 0.39 -6.41 16 26 H 0.08 0.36 8.06 -51.93 -0.42 -0.05 16 27 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.07 0.14 6.56 -51.93 -0.34 -0.20 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.13 6.56 -51.93 -0.34 -0.21 16 33 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.08 0.35 8.06 -51.93 -0.42 -0.07 16 35 H 0.16 0.64 6.87 -51.92 -0.36 0.28 16 36 H 0.16 0.67 6.87 -51.92 -0.36 0.31 16 37 H 0.42 4.65 8.82 -40.82 -0.36 4.29 16 38 H 0.16 3.21 5.92 -52.49 -0.31 2.90 16 39 H 0.17 2.78 8.06 -52.48 -0.42 2.35 16 40 H 0.05 1.14 7.94 -51.93 -0.41 0.73 16 41 H 0.04 0.92 8.00 -51.93 -0.42 0.50 16 42 H 0.27 7.57 7.22 -40.82 -0.29 7.28 16 LS Contribution 363.56 15.07 5.48 5.48 Total: -1.00 -39.20 363.56 -8.24 -47.44 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.77 Total: 1.17 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -1.32 Total: -13.42 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 0.86 Total: -48.69 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -2.08 Total: -36.77 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.08 Total: 19.70 kcal Atomic # 16 Polarization: 25.42 SS G_CDS: -0.32 Total: 25.09 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -39.20 -8.24 -47.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153149678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.324 kcal (2) G-P(sol) polarization free energy of solvation -39.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds