Wall clock time and date at job start Tue Mar 31 2020 05:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.38664 * 120.39933 * 2 1 4 4 C 1.38668 * 118.56004 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.39930 * 179.97438 * 4 3 2 6 6 N 1.32226 * 119.19579 * 359.97438 * 4 3 2 7 7 C 1.32563 * 120.74139 * 0.02562 * 6 4 3 8 8 S 1.76200 * 119.21820 * 179.97438 * 7 6 4 9 9 C 1.76203 * 100.00143 * 354.99906 * 8 7 6 10 10 C 1.39358 * 119.99945 * 274.71125 * 9 8 7 11 11 C 1.37711 * 120.00143 * 179.75993 * 10 9 8 12 12 C 1.39377 * 119.99688 * 0.53486 * 11 10 9 13 13 N 1.39065 * 120.00209 * 179.69693 * 12 11 10 14 14 C 1.34776 * 119.99646 * 215.17876 * 13 12 11 15 15 O 1.21863 * 120.00614 * 355.42349 * 14 13 12 16 16 C 1.41245 * 119.99484 * 175.42246 * 14 13 12 17 17 H 1.08002 * 120.00277 * 359.97438 * 16 14 13 18 18 C 1.40120 * 119.99794 * 180.02562 * 16 14 13 19 19 N 1.30644 * 119.99939 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 120.00148 * 180.02562 * 18 16 14 21 21 H 1.48509 * 109.47038 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47431 * 119.99624 * 20 18 16 23 23 H 1.48507 * 109.47400 * 239.99922 * 20 18 16 24 24 C 1.39387 * 119.99678 * 359.72152 * 12 11 10 25 25 C 1.37703 * 119.99397 * 359.97438 * 24 12 11 26 26 N 1.32222 * 120.40000 * 180.02562 * 2 1 3 27 27 H 1.08994 * 109.46625 * 90.00024 * 1 2 3 28 28 H 1.08997 * 109.46898 * 210.00191 * 1 2 3 29 29 H 1.08998 * 109.46907 * 329.99847 * 1 2 3 30 30 H 1.08005 * 120.72063 * 359.74690 * 3 2 1 31 31 H 1.08999 * 109.46693 * 89.99735 * 5 4 3 32 32 H 1.08997 * 109.46835 * 209.99743 * 5 4 3 33 33 H 1.09000 * 109.47266 * 329.99653 * 5 4 3 34 34 H 1.08001 * 119.99589 * 0.02562 * 10 9 8 35 35 H 1.08007 * 119.99776 * 180.23075 * 11 10 9 36 36 H 0.96992 * 119.99947 * 35.17574 * 13 12 11 37 37 H 0.97007 * 119.99683 * 179.97438 * 19 18 16 38 38 H 1.07996 * 120.00287 * 179.97438 * 24 12 11 39 39 H 1.07997 * 119.99952 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2088 1.1960 0.0000 4 6 3.5947 1.1515 -0.0005 5 6 4.3987 2.4262 -0.0011 6 7 4.2024 -0.0229 -0.0005 7 6 3.5018 -1.1483 -0.0005 8 16 4.3528 -2.6912 -0.0012 9 6 6.0142 -2.1242 -0.1530 10 6 6.5468 -1.8566 -1.4126 11 6 7.8437 -1.4088 -1.5310 12 6 8.6271 -1.2338 -0.3916 13 7 9.9388 -0.7876 -0.5115 14 6 10.8861 -1.2462 0.3304 15 8 10.5790 -1.9867 1.2482 16 6 12.2349 -0.8684 0.1489 17 1 12.5072 -0.2124 -0.6648 18 6 13.2199 -1.3456 1.0237 19 7 12.8906 -2.1395 2.0076 20 14 15.0037 -0.8455 0.7842 21 1 15.1119 0.0536 -0.3929 22 1 15.4858 -0.1353 1.9959 23 1 15.8316 -2.0575 0.5584 24 6 8.0961 -1.5066 0.8679 25 6 6.7972 -1.9484 0.9864 26 7 2.1762 -1.1404 -0.0005 27 1 -0.3632 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6872 2.1417 -0.0041 31 1 4.5928 2.7337 1.0264 32 1 5.3450 2.2586 -0.5153 33 1 3.8395 3.2082 -0.5150 34 1 5.9410 -1.9964 -2.2958 35 1 8.2552 -1.1978 -2.5070 36 1 10.1718 -0.1464 -1.2009 37 1 13.5727 -2.4701 2.6131 38 1 8.7032 -1.3714 1.7508 39 1 6.3858 -2.1602 1.9622 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153529056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:32 Heat of formation + Delta-G solvation = 29.131772 kcal Electronic energy + Delta-G solvation = -24012.750544 eV Core-core repulsion = 20432.247365 eV Total energy + Delta-G solvation = -3580.503179 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.094 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.93099 -39.19015 -37.01476 -34.87979 -33.62773 -33.29927 -32.50005 -30.44507 -29.59996 -28.99595 -27.69585 -26.52556 -24.48912 -22.52602 -22.15667 -21.67884 -19.94770 -17.94589 -17.64746 -17.63969 -16.55570 -15.92654 -15.66774 -15.49586 -15.40282 -14.56385 -14.07660 -13.92118 -13.67404 -13.60121 -13.34545 -13.11557 -12.92965 -12.84939 -12.75671 -12.69666 -12.31428 -12.21753 -11.81642 -11.40269 -11.19707 -10.92346 -10.78232 -10.70245 -10.37886 -10.36315 -10.35013 -9.96839 -9.40079 -9.24530 -8.93965 -8.46011 -7.77782 -7.68588 -7.18444 -6.45162 -4.99751 0.75041 1.03429 1.09458 1.99578 2.09253 2.46750 2.99403 3.08427 3.12809 3.57948 3.91682 3.99870 4.16869 4.21602 4.44017 4.52714 4.58267 4.95320 4.98573 5.10636 5.23490 5.33182 5.35996 5.39640 5.42595 5.56772 5.62335 5.68429 5.81497 5.88807 6.05739 6.19867 6.27398 6.53252 6.65362 6.90690 6.98131 7.05408 7.15622 7.33454 7.77758 7.94146 7.94566 8.09751 8.72130 9.17771 10.29382 10.49384 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.025891 B = 0.002535 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.203727 B =11040.780163 C =11543.654139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.184 3.816 3 C -0.248 4.248 4 C 0.190 3.810 5 C -0.106 4.106 6 N -0.509 5.509 7 C 0.292 3.708 8 S 0.097 5.903 9 C -0.188 4.188 10 C -0.030 4.030 11 C -0.191 4.191 12 C 0.233 3.767 13 N -0.699 5.699 14 C 0.540 3.460 15 O -0.565 6.565 16 C -0.535 4.535 17 H 0.071 0.929 18 C 0.087 3.913 19 N -0.743 5.743 20 Si 0.914 3.086 21 H -0.262 1.262 22 H -0.273 1.273 23 H -0.273 1.273 24 C -0.142 4.142 25 C -0.032 4.032 26 N -0.515 5.515 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.142 0.858 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.394 0.606 37 H 0.273 0.727 38 H 0.148 0.852 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.747 7.419 -5.305 20.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.035 3.965 3 C -0.274 4.274 4 C 0.040 3.960 5 C -0.164 4.164 6 N -0.227 5.227 7 C -0.081 4.081 8 S 0.340 5.660 9 C -0.302 4.302 10 C -0.052 4.052 11 C -0.214 4.214 12 C 0.131 3.869 13 N -0.340 5.340 14 C 0.350 3.650 15 O -0.448 6.448 16 C -0.570 4.570 17 H 0.089 0.911 18 C -0.137 4.137 19 N -0.371 5.371 20 Si 0.738 3.262 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.164 4.164 25 C -0.053 4.053 26 N -0.234 5.234 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.160 0.840 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.227 0.773 37 H 0.084 0.916 38 H 0.165 0.835 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.702 4.675 -4.381 19.769 hybrid contribution 1.087 2.723 -0.622 2.997 sum -17.615 7.398 -5.003 19.750 Atomic orbital electron populations 1.20751 0.87868 1.03910 1.03537 1.21711 0.97339 0.88171 0.89307 1.22439 0.95625 1.00179 1.09169 1.21788 0.91505 0.94210 0.88503 1.20779 1.00340 0.91484 1.03749 1.68839 1.40002 0.97626 1.16256 1.25808 0.89904 0.98873 0.93548 1.84483 0.95246 0.97742 1.88571 1.21325 0.96451 1.16000 0.96449 1.20933 0.94434 0.94361 0.95432 1.20856 0.95395 1.07880 0.97270 1.18244 0.85032 0.90703 0.92947 1.44244 1.05660 1.46376 1.37728 1.16983 0.85158 0.81405 0.81428 1.90676 1.81682 1.39860 1.32600 1.19977 0.91282 1.31010 1.14766 0.91057 1.25779 1.00989 0.93188 0.93705 1.70025 1.34670 1.21874 1.10493 0.86210 0.81601 0.79191 0.79231 1.18526 1.19856 1.19864 1.21504 0.94231 1.02616 0.98080 1.21208 0.93360 0.94026 0.96748 1.68358 1.07812 1.30027 1.17200 0.89796 0.89961 0.90231 0.83998 0.89649 0.89719 0.90313 0.86482 0.86139 0.77266 0.91564 0.83454 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 10.22 36.01 0.37 -0.38 16 2 C 0.18 2.13 6.82 -82.26 -0.56 1.56 16 3 C -0.25 -2.62 9.54 -39.27 -0.37 -3.00 16 4 C 0.19 2.40 6.82 -82.26 -0.56 1.84 16 5 C -0.11 -1.01 10.22 36.01 0.37 -0.64 16 6 N -0.51 -7.98 9.12 -9.66 -0.09 -8.07 16 7 C 0.29 4.63 7.84 -90.83 -0.71 3.92 16 8 S 0.10 1.50 22.22 -107.50 -2.39 -0.89 16 9 C -0.19 -3.23 4.59 -38.75 -0.18 -3.41 16 10 C -0.03 -0.50 9.79 -39.36 -0.39 -0.88 16 11 C -0.19 -3.32 9.96 -39.35 -0.39 -3.72 16 12 C 0.23 4.80 6.30 -83.73 -0.53 4.27 16 13 N -0.70 -15.30 5.29 -12.50 -0.07 -15.37 16 14 C 0.54 14.59 7.39 -15.12 -0.11 14.48 16 15 O -0.56 -17.18 12.28 5.04 0.06 -17.12 16 16 C -0.54 -14.19 9.29 -37.73 -0.35 -14.54 16 17 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 18 C 0.09 2.28 5.50 -17.35 -0.10 2.18 16 19 N -0.74 -21.00 11.72 55.55 0.65 -20.35 16 20 Si 0.91 18.90 29.56 -169.99 -5.02 13.88 16 21 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 24 C -0.14 -3.02 8.67 -39.35 -0.34 -3.36 16 25 C -0.03 -0.59 9.79 -39.36 -0.39 -0.98 16 26 N -0.52 -7.56 10.33 -9.66 -0.10 -7.66 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16 30 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 34 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 36 H 0.39 7.32 8.77 -40.82 -0.36 6.96 16 37 H 0.27 6.94 8.29 -40.82 -0.34 6.61 16 38 H 0.15 3.58 6.21 -52.49 -0.33 3.25 16 39 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 356.68 15.07 5.38 5.38 Total: -1.00 -33.55 356.68 -10.27 -43.82 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -4.45 Total: 9.02 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -4.24 Total: -2.64 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 0.40 Total: -51.44 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: 0.06 Total: -17.12 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.88 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.39 Total: -0.89 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.55 -10.27 -43.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153529056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.951 kcal (2) G-P(sol) polarization free energy of solvation -33.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds