Wall clock time and date at job start Tue Mar 31 2020 05:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 117.00254 * 2 1 4 4 C 1.38725 * 120.05592 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94620 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05239 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94622 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47237 * 24.99833 * 7 6 5 9 9 O 1.42892 * 109.47670 * 145.00283 * 7 6 5 10 10 C 1.53003 * 109.47168 * 265.00338 * 7 6 5 11 11 N 1.46500 * 109.47410 * 179.97438 * 10 7 6 12 12 S 1.65598 * 120.00170 * 164.99746 * 11 10 7 13 13 O 1.42093 * 104.27786 * 181.07127 * 12 11 10 14 14 O 1.42099 * 104.27775 * 308.93260 * 12 11 10 15 15 C 1.81401 * 104.44789 * 64.99845 * 12 11 10 16 16 C 1.53004 * 109.47008 * 179.97438 * 15 12 11 17 17 C 1.50704 * 109.47011 * 180.02562 * 16 15 12 18 18 H 1.08000 * 120.00013 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99849 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99923 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00058 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47164 * 90.00078 * 21 19 17 23 23 H 1.48503 * 109.47230 * 210.00020 * 21 19 17 24 24 H 1.48504 * 109.46926 * 330.00189 * 21 19 17 25 25 C 1.38265 * 120.11333 * 0.02562 * 6 5 4 26 26 C 1.38143 * 120.05412 * 359.97438 * 25 6 5 27 27 H 1.09001 * 109.47459 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47097 * 299.99927 * 1 2 3 29 29 H 1.09005 * 109.47182 * 59.99870 * 1 2 3 30 30 H 1.08000 * 120.03004 * 359.96283 * 4 3 2 31 31 H 1.08002 * 119.97573 * 179.72233 * 5 4 3 32 32 H 0.96697 * 114.00414 * 59.99380 * 9 7 6 33 33 H 1.09004 * 109.47076 * 300.00052 * 10 7 6 34 34 H 1.09005 * 109.47386 * 59.99548 * 10 7 6 35 35 H 0.97003 * 119.99764 * 345.00108 * 11 10 7 36 36 H 1.08999 * 109.47670 * 300.00058 * 15 12 11 37 37 H 1.08998 * 109.47210 * 60.00400 * 15 12 11 38 38 H 1.08998 * 109.47721 * 300.00533 * 16 15 12 39 39 H 1.09001 * 109.46962 * 60.00604 * 16 15 12 40 40 H 0.97008 * 119.99749 * 179.97438 * 20 19 17 41 41 H 1.08001 * 119.97543 * 180.02562 * 25 6 5 42 42 H 1.08001 * 120.02739 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 1 4.9812 4.9189 -0.4365 9 8 3.2195 5.9431 -0.7768 10 6 4.1051 5.5315 1.4338 11 7 4.7707 6.8365 1.4327 12 16 4.7092 7.7985 2.7793 13 8 5.4265 8.9675 2.4079 14 8 3.3271 7.8591 3.1038 15 6 5.6193 6.8676 4.0425 16 6 5.6339 7.6622 5.3499 17 6 6.3905 6.8891 6.3992 18 1 6.8186 5.9274 6.1576 19 6 6.5363 7.4096 7.6676 20 7 6.0146 8.5804 7.9619 21 14 7.4748 6.4517 8.9681 22 1 8.9109 6.8260 8.9184 23 1 6.9260 6.7712 10.3105 24 1 7.3334 4.9963 8.7090 25 6 1.9212 3.6047 -0.0021 26 6 1.2916 2.3751 -0.0016 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 4.0208 0.3798 0.0016 31 1 5.1346 2.5749 0.0050 32 1 2.3207 6.0811 -0.4479 33 1 3.1101 5.6310 1.8676 34 1 4.6900 4.8262 2.0243 35 1 5.2475 7.1372 0.6433 36 1 5.1325 5.9062 4.2066 37 1 6.6430 6.7037 3.7060 38 1 6.1209 8.6234 5.1856 39 1 4.6103 7.8264 5.6867 40 1 6.1169 8.9464 8.8545 41 1 1.3343 4.5113 -0.0038 42 1 0.2130 2.3202 -0.0025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159499034.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:26 Heat of formation + Delta-G solvation = -144.546184 kcal Electronic energy + Delta-G solvation = -25394.237703 eV Core-core repulsion = 21466.601612 eV Total energy + Delta-G solvation = -3927.636091 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.61318 -38.90429 -36.86257 -36.53679 -35.43629 -34.44211 -33.89604 -31.43981 -31.30137 -31.16466 -28.22928 -27.01978 -25.60493 -23.69379 -22.81317 -21.72675 -21.32746 -18.97368 -18.63414 -17.56864 -17.50183 -16.77352 -16.56855 -16.11492 -15.85185 -15.60171 -15.26528 -15.13851 -14.70730 -14.52136 -14.41463 -13.99237 -13.81816 -13.38921 -13.19458 -12.95988 -12.79075 -12.49529 -12.32285 -11.85990 -11.76205 -11.66746 -11.58647 -11.49535 -11.23390 -11.11434 -11.08634 -10.96519 -10.43129 -10.41173 -10.37380 -9.81347 -9.50582 -9.34993 -9.02942 -8.50953 -8.47181 -6.13103 -4.18694 0.77271 0.99189 1.03230 2.88979 3.11464 3.25585 3.31836 3.34426 3.37179 4.15392 4.23303 4.34869 4.38224 4.39267 4.50785 4.61940 4.69183 4.74523 4.75168 4.89076 4.99636 5.05749 5.13503 5.22124 5.27634 5.35218 5.53900 5.61540 5.66598 5.70030 5.84331 5.92783 5.99744 6.22955 6.36980 6.48132 7.00312 7.09171 7.29658 7.34157 7.36182 7.79856 8.16900 8.84741 9.46114 10.97932 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.012391 B = 0.002764 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.093730 B =10127.735311 C =11656.664311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.128 3.872 4 C -0.149 4.149 5 C -0.066 4.066 6 C -0.155 4.155 7 C 0.150 3.850 8 H 0.115 0.885 9 O -0.549 6.549 10 C 0.087 3.913 11 N -1.122 6.122 12 S 2.595 3.405 13 O -0.966 6.966 14 O -0.968 6.968 15 C -0.591 4.591 16 C 0.028 3.972 17 C -0.520 4.520 18 H 0.061 0.939 19 C 0.057 3.943 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 C -0.068 4.068 26 C -0.204 4.204 27 H 0.100 0.900 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.376 0.624 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.415 0.585 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.265 0.735 41 H 0.126 0.874 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.947 -15.630 -18.998 26.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.232 6.232 3 C 0.082 3.918 4 C -0.168 4.168 5 C -0.084 4.084 6 C -0.156 4.156 7 C 0.089 3.911 8 H 0.132 0.868 9 O -0.355 6.355 10 C -0.040 4.040 11 N -0.880 5.880 12 S 2.693 3.307 13 O -0.957 6.957 14 O -0.958 6.958 15 C -0.724 4.724 16 C -0.011 4.011 17 C -0.560 4.560 18 H 0.079 0.921 19 C -0.145 4.145 20 N -0.529 5.529 21 Si 0.727 3.273 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.086 4.086 26 C -0.223 4.223 27 H 0.118 0.882 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.225 0.775 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.249 0.751 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.144 0.856 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.911 -14.871 -19.021 25.736 hybrid contribution 0.259 -0.940 1.014 1.407 sum -8.652 -15.811 -18.007 25.477 Atomic orbital electron populations 1.23081 0.78213 1.04053 1.01509 1.86074 1.21549 1.26947 1.88596 1.19089 0.92454 0.84195 0.96013 1.20434 0.91391 0.98736 1.06243 1.20828 1.00054 0.90756 0.96805 1.20359 0.94225 0.95772 1.05248 1.20905 0.95331 0.84338 0.90517 0.86755 1.86613 1.29464 1.64060 1.55383 1.21980 0.98931 0.85044 0.98065 1.55684 1.69076 1.31134 1.32084 1.05481 0.75608 0.74792 0.74847 1.93555 1.75095 1.45411 1.81597 1.93529 1.32001 1.86240 1.84065 1.30456 1.13052 1.13613 1.15276 1.18962 0.99215 0.95113 0.87837 1.21004 1.35009 1.04840 0.95126 0.92057 1.25072 0.95682 0.95102 0.98661 1.69959 1.44403 1.17265 1.21228 0.86467 0.79946 0.80122 0.80727 1.20462 1.21013 1.19760 1.20697 0.93830 0.97332 0.96724 1.21204 1.00174 0.92181 1.08743 0.88178 0.92425 0.92597 0.84950 0.84831 0.77519 0.89835 0.90559 0.75080 0.86411 0.86069 0.94816 0.94835 0.92525 0.85589 0.85252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.86 10.50 -19.42 -0.20 -3.07 16 3 C 0.13 1.20 6.69 -39.22 -0.26 0.93 16 4 C -0.15 -1.33 9.99 -39.44 -0.39 -1.72 16 5 C -0.07 -0.55 9.67 -39.61 -0.38 -0.93 16 6 C -0.15 -1.35 5.01 -104.60 -0.52 -1.88 16 7 C 0.15 1.33 3.30 -27.88 -0.09 1.23 16 8 H 0.11 0.89 8.05 -51.93 -0.42 0.47 16 9 O -0.55 -5.37 13.00 -35.23 -0.46 -5.83 16 10 C 0.09 0.91 5.78 -4.04 -0.02 0.88 16 11 N -1.12 -13.91 5.75 -10.61 -0.06 -13.97 16 12 S 2.60 45.21 5.46 -107.50 -0.59 44.62 16 13 O -0.97 -19.95 18.08 -57.54 -1.04 -20.99 16 14 O -0.97 -19.58 17.50 -57.54 -1.01 -20.59 16 15 C -0.59 -11.03 6.01 37.16 0.22 -10.81 16 16 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 17 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 21 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 25 C -0.07 -0.57 9.32 -39.61 -0.37 -0.94 16 26 C -0.20 -1.72 9.04 -39.43 -0.36 -2.08 16 27 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.27 7.67 -51.93 -0.40 -0.13 16 29 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 30 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 32 H 0.38 2.78 7.39 45.56 0.34 3.12 16 33 H 0.08 0.91 7.70 -51.93 -0.40 0.51 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.42 4.55 8.62 -34.47 -0.30 4.25 16 36 H 0.12 1.95 8.14 -51.92 -0.42 1.53 16 37 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 38 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.13 0.82 6.61 -52.49 -0.35 0.48 16 42 H 0.13 0.83 6.30 -52.49 -0.33 0.50 16 LS Contribution 369.58 15.07 5.57 5.57 Total: -1.00 -37.13 369.58 -8.98 -46.12 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -5.17 Total: 4.45 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: -1.74 Total: -26.72 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.68 Total: -39.70 kcal Atomic # 8 Polarization: -47.76 SS G_CDS: -2.71 Total: -50.47 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 45.21 SS G_CDS: -0.59 Total: 44.62 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.13 -8.98 -46.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159499034.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.428 kcal (2) G-P(sol) polarization free energy of solvation -37.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds