Wall clock time and date at job start Tue Mar 31 2020 05:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 117.00254 * 2 1 4 4 C 1.38725 * 120.05592 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94620 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05239 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94622 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47237 * 24.99833 * 7 6 5 9 9 O 1.42892 * 109.47670 * 145.00283 * 7 6 5 10 10 C 1.53003 * 109.47168 * 265.00338 * 7 6 5 11 11 N 1.46500 * 109.47410 * 179.97438 * 10 7 6 12 12 S 1.65598 * 120.00170 * 164.99746 * 11 10 7 13 13 O 1.42093 * 104.27786 * 181.07127 * 12 11 10 14 14 O 1.42099 * 104.27775 * 308.93260 * 12 11 10 15 15 C 1.81401 * 104.44789 * 64.99845 * 12 11 10 16 16 C 1.53004 * 109.47008 * 179.97438 * 15 12 11 17 17 C 1.50704 * 109.47011 * 180.02562 * 16 15 12 18 18 H 1.08000 * 120.00013 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99849 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99923 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00058 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47164 * 90.00078 * 21 19 17 23 23 H 1.48503 * 109.47230 * 210.00020 * 21 19 17 24 24 H 1.48504 * 109.46926 * 330.00189 * 21 19 17 25 25 C 1.38265 * 120.11333 * 0.02562 * 6 5 4 26 26 C 1.38143 * 120.05412 * 359.97438 * 25 6 5 27 27 H 1.09001 * 109.47459 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47097 * 299.99927 * 1 2 3 29 29 H 1.09005 * 109.47182 * 59.99870 * 1 2 3 30 30 H 1.08000 * 120.03004 * 359.96283 * 4 3 2 31 31 H 1.08002 * 119.97573 * 179.72233 * 5 4 3 32 32 H 0.96697 * 114.00414 * 59.99380 * 9 7 6 33 33 H 1.09004 * 109.47076 * 300.00052 * 10 7 6 34 34 H 1.09005 * 109.47386 * 59.99548 * 10 7 6 35 35 H 0.97003 * 119.99764 * 345.00108 * 11 10 7 36 36 H 1.08999 * 109.47670 * 300.00058 * 15 12 11 37 37 H 1.08998 * 109.47210 * 60.00400 * 15 12 11 38 38 H 1.08998 * 109.47721 * 300.00533 * 16 15 12 39 39 H 1.09001 * 109.46962 * 60.00604 * 16 15 12 40 40 H 0.97008 * 119.99749 * 179.97438 * 20 19 17 41 41 H 1.08001 * 119.97543 * 180.02562 * 25 6 5 42 42 H 1.08001 * 120.02739 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 1 4.9812 4.9189 -0.4365 9 8 3.2195 5.9431 -0.7768 10 6 4.1051 5.5315 1.4338 11 7 4.7707 6.8365 1.4327 12 16 4.7092 7.7985 2.7793 13 8 5.4265 8.9675 2.4079 14 8 3.3271 7.8591 3.1038 15 6 5.6193 6.8676 4.0425 16 6 5.6339 7.6622 5.3499 17 6 6.3905 6.8891 6.3992 18 1 6.8186 5.9274 6.1576 19 6 6.5363 7.4096 7.6676 20 7 6.0146 8.5804 7.9619 21 14 7.4748 6.4517 8.9681 22 1 8.9109 6.8260 8.9184 23 1 6.9260 6.7712 10.3105 24 1 7.3334 4.9963 8.7090 25 6 1.9212 3.6047 -0.0021 26 6 1.2916 2.3751 -0.0016 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 4.0208 0.3798 0.0016 31 1 5.1346 2.5749 0.0050 32 1 2.3207 6.0811 -0.4479 33 1 3.1101 5.6310 1.8676 34 1 4.6900 4.8262 2.0243 35 1 5.2475 7.1372 0.6433 36 1 5.1325 5.9062 4.2066 37 1 6.6430 6.7037 3.7060 38 1 6.1209 8.6234 5.1856 39 1 4.6103 7.8264 5.6867 40 1 6.1169 8.9464 8.8545 41 1 1.3343 4.5113 -0.0038 42 1 0.2130 2.3202 -0.0025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159499034.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:26 Heat of formation + Delta-G solvation = -174.668289 kcal Electronic energy + Delta-G solvation = -25395.543896 eV Core-core repulsion = 21466.601612 eV Total energy + Delta-G solvation = -3928.942284 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -41.21316 -39.56472 -38.12702 -37.49083 -36.97632 -35.87789 -35.39598 -33.10585 -32.03289 -31.97516 -28.82876 -27.67046 -27.57033 -24.42638 -23.58523 -23.41539 -22.03636 -20.28607 -19.25384 -19.07533 -18.43395 -18.16804 -17.40620 -17.09371 -16.99293 -16.64081 -16.52813 -16.09854 -15.97962 -15.72234 -15.23268 -14.97920 -14.60601 -14.47478 -14.39953 -13.80221 -13.74725 -13.64195 -13.51769 -13.16528 -13.08207 -13.00671 -12.92224 -12.78901 -12.76537 -12.35837 -12.22303 -12.12064 -11.80559 -11.73029 -11.69419 -11.17971 -11.16035 -10.63944 -10.32450 -9.95734 -9.10338 -8.25365 -6.39175 -0.65029 0.37175 0.39408 1.41509 1.43181 1.54238 1.88458 2.38472 2.38707 2.72827 2.85239 3.08270 3.29939 3.51690 3.68883 3.80351 3.85821 3.96422 4.06773 4.16179 4.19737 4.29833 4.38604 4.42768 4.51908 4.56579 4.67083 4.73815 4.78407 4.87065 4.94486 5.09034 5.26785 5.29546 5.30478 5.37696 5.60551 5.69536 5.79440 6.07285 6.15536 6.43388 6.73199 6.74924 7.31064 8.86915 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.012391 B = 0.002764 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.093730 B =10127.735311 C =11656.664311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.113 3.887 4 C -0.165 4.165 5 C -0.068 4.068 6 C -0.163 4.163 7 C 0.159 3.841 8 H 0.129 0.871 9 O -0.563 6.563 10 C 0.076 3.924 11 N -1.101 6.101 12 S 2.624 3.376 13 O -1.001 7.001 14 O -0.998 6.998 15 C -0.589 4.589 16 C 0.019 3.981 17 C -0.538 4.538 18 H 0.077 0.923 19 C -0.005 4.005 20 N -0.935 5.935 21 Si 0.974 3.026 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.257 1.257 25 C -0.077 4.077 26 C -0.212 4.212 27 H 0.117 0.883 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.139 0.861 31 H 0.155 0.845 32 H 0.385 0.615 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.426 0.574 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.005 0.995 39 H 0.007 0.993 40 H 0.267 0.733 41 H 0.141 0.859 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.422 -17.701 -19.753 27.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.067 3.933 4 C -0.184 4.184 5 C -0.086 4.086 6 C -0.164 4.164 7 C 0.098 3.902 8 H 0.147 0.853 9 O -0.370 6.370 10 C -0.050 4.050 11 N -0.864 5.864 12 S 2.721 3.279 13 O -0.991 6.991 14 O -0.987 6.987 15 C -0.721 4.721 16 C -0.020 4.020 17 C -0.577 4.577 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.575 5.575 21 Si 0.797 3.203 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.181 1.181 25 C -0.095 4.095 26 C -0.231 4.231 27 H 0.135 0.865 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.157 0.843 31 H 0.172 0.828 32 H 0.235 0.765 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.263 0.737 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.024 0.976 39 H 0.025 0.975 40 H 0.076 0.924 41 H 0.158 0.842 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -8.386 -16.951 -19.785 27.370 hybrid contribution 0.012 -0.346 1.161 1.212 sum -8.374 -17.296 -18.624 26.761 Atomic orbital electron populations 1.23322 0.76594 1.05495 1.02173 1.86046 1.23358 1.27068 1.88623 1.19352 0.92967 0.84653 0.96288 1.20679 0.91610 0.99441 1.06650 1.21088 1.01182 0.90304 0.96009 1.20400 0.94422 0.95741 1.05840 1.20876 0.95983 0.84059 0.89250 0.85308 1.86593 1.30283 1.64316 1.55837 1.22305 0.98897 0.84007 0.99817 1.55136 1.69159 1.31613 1.30447 1.04320 0.74333 0.74232 0.75025 1.93503 1.75623 1.47731 1.82250 1.93490 1.33575 1.86722 1.84960 1.30350 1.15328 1.13875 1.12576 1.18824 0.97070 0.94942 0.91142 1.21535 1.34798 1.05503 0.95848 0.90528 1.26123 0.96706 0.96070 1.01437 1.70109 1.46181 1.19265 1.21925 0.85317 0.78426 0.79227 0.77306 1.19666 1.20947 1.18055 1.20975 0.94172 0.97982 0.96385 1.21423 1.01094 0.91966 1.08580 0.86464 0.91959 0.91686 0.84268 0.82774 0.76517 0.90298 0.88535 0.73723 0.83941 0.83781 0.97619 0.97492 0.92436 0.84151 0.83747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.29 16 2 O -0.34 -5.78 10.50 -92.40 -0.97 -6.75 16 3 C 0.11 2.00 6.69 22.50 0.15 2.15 16 4 C -0.17 -2.73 9.99 22.36 0.22 -2.51 16 5 C -0.07 -0.98 9.67 22.25 0.22 -0.77 16 6 C -0.16 -2.50 5.01 -19.85 -0.10 -2.60 16 7 C 0.16 2.40 3.30 29.85 0.10 2.50 16 8 H 0.13 1.57 8.05 -2.39 -0.02 1.55 16 9 O -0.56 -9.79 13.00 -148.98 -1.94 -11.73 16 10 C 0.08 1.39 5.78 86.38 0.50 1.89 16 11 N -1.10 -24.93 5.75 -187.48 -1.08 -26.01 16 12 S 2.62 89.69 5.46 -56.49 -0.31 89.38 16 13 O -1.00 -41.29 18.08 -127.65 -2.31 -43.60 16 14 O -1.00 -40.20 17.50 -127.65 -2.23 -42.43 16 15 C -0.59 -21.33 6.01 71.98 0.43 -20.90 16 16 C 0.02 0.99 4.98 29.85 0.15 1.13 16 17 C -0.54 -29.50 9.11 25.60 0.23 -29.26 16 18 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 19 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 20 N -0.94 -56.85 13.29 21.45 0.28 -56.56 16 21 Si 0.97 43.01 29.54 68.60 2.03 45.04 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 25 C -0.08 -1.17 9.32 22.25 0.21 -0.97 16 26 C -0.21 -3.29 9.04 22.37 0.20 -3.09 16 27 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 0.51 7.67 -2.39 -0.02 0.50 16 29 H 0.06 0.48 7.66 -2.38 -0.02 0.46 16 30 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 31 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 32 H 0.38 4.99 7.39 -74.06 -0.55 4.45 16 33 H 0.08 1.56 7.70 -2.38 -0.02 1.54 16 34 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.43 8.29 8.62 -96.74 -0.83 7.45 16 36 H 0.14 4.40 8.14 -2.39 -0.02 4.38 16 37 H 0.14 4.52 8.14 -2.39 -0.02 4.50 16 38 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 41 H 0.14 1.59 6.61 -2.91 -0.02 1.57 16 42 H 0.14 1.64 6.30 -2.91 -0.02 1.63 16 Total: -1.00 -80.80 369.58 -2.96 -83.76 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -0.33 Total: 19.87 kcal Atomic # 6 Polarization: -54.85 SS G_CDS: 3.89 Total: -50.96 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -0.79 Total: -82.57 kcal Atomic # 8 Polarization: -97.07 SS G_CDS: -7.45 Total: -104.51 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 89.69 SS G_CDS: -0.31 Total: 89.38 kcal Total: -80.80 -2.96 -83.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159499034.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.908 kcal (2) G-P(sol) polarization free energy of solvation -80.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds