Wall clock time and date at job start Tue Mar 31 2020 05:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35900 * 117.00317 * 2 1 4 4 C 1.38758 * 120.05190 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94040 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.05726 * 359.74693 * 5 4 3 7 7 C 1.38237 * 120.11029 * 0.51105 * 6 5 4 8 8 C 1.50702 * 119.97495 * 179.76804 * 7 6 5 9 9 H 1.09000 * 109.47520 * 159.72130 * 8 7 6 10 10 O 1.42898 * 109.46965 * 39.71949 * 8 7 6 11 11 C 1.53002 * 109.46977 * 279.72544 * 8 7 6 12 12 N 1.46501 * 109.47163 * 184.99549 * 11 8 7 13 13 S 1.65608 * 120.00079 * 164.99607 * 12 11 8 14 14 O 1.42095 * 104.27841 * 181.07390 * 13 12 11 15 15 O 1.42102 * 104.27658 * 308.93104 * 13 12 11 16 16 C 1.81406 * 104.44741 * 65.00031 * 13 12 11 17 17 C 1.52991 * 109.46937 * 179.97438 * 16 13 12 18 18 C 1.50698 * 109.47171 * 180.02562 * 17 16 13 19 19 H 1.08003 * 120.00001 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00289 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99796 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00185 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47022 * 89.99865 * 22 20 18 24 24 H 1.48501 * 109.47501 * 209.99853 * 22 20 18 25 25 H 1.48502 * 109.47516 * 330.00235 * 22 20 18 26 26 C 1.38165 * 120.05880 * 359.48760 * 7 6 5 27 27 H 1.08997 * 109.46901 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47495 * 300.00483 * 1 2 3 29 29 H 1.09005 * 109.46676 * 60.00139 * 1 2 3 30 30 H 1.07991 * 120.02733 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.97193 * 180.02562 * 5 4 3 32 32 H 1.08000 * 119.94495 * 180.27785 * 6 5 4 33 33 H 0.96699 * 114.00560 * 300.00047 * 10 8 7 34 34 H 1.09002 * 109.47445 * 64.99831 * 11 8 7 35 35 H 1.09001 * 109.46949 * 304.99417 * 11 8 7 36 36 H 0.97002 * 120.00027 * 345.00118 * 12 11 8 37 37 H 1.09000 * 109.47167 * 300.00580 * 16 13 12 38 38 H 1.09000 * 109.46895 * 59.99901 * 16 13 12 39 39 H 1.09008 * 109.47545 * 300.00011 * 17 16 13 40 40 H 1.09000 * 109.47377 * 60.00235 * 17 16 13 41 41 H 0.96998 * 119.99506 * 179.97438 * 21 20 18 42 42 H 1.07996 * 120.03420 * 180.27480 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6757 0.0064 7 6 4.0560 2.5171 0.0005 8 6 5.5608 2.5980 0.0010 9 1 5.9754 1.6532 0.3523 10 8 5.9807 3.6540 0.8674 11 6 6.0570 2.8760 -1.4194 12 7 7.5213 2.8365 -1.4416 13 16 8.3250 2.7309 -2.8857 14 8 9.6977 2.6906 -2.5207 15 8 7.7109 1.6346 -3.5492 16 6 7.9373 4.2867 -3.7343 17 6 8.6312 4.3106 -5.0976 18 6 8.3096 5.6032 -5.8023 19 1 7.6736 6.3345 -5.3256 20 6 8.8265 5.8521 -7.0561 21 7 9.6006 4.9614 -7.6368 22 14 8.4274 7.4541 -7.9299 23 1 9.4460 8.4763 -7.5792 24 1 8.4340 7.2321 -9.3982 25 1 7.0850 7.9276 -7.5069 26 6 3.4312 1.2848 -0.0001 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 0.2129 2.3203 0.0014 31 1 1.3340 4.5114 0.0019 32 1 3.7923 4.6380 0.0113 33 1 5.6481 4.5261 0.6145 34 1 5.7154 3.8611 -1.7374 35 1 5.6628 2.1185 -2.0968 36 1 8.0201 2.8721 -0.6104 37 1 6.8591 4.3658 -3.8734 38 1 8.2886 5.1255 -3.1335 39 1 9.7094 4.2317 -4.9581 40 1 8.2803 3.4717 -5.6987 41 1 9.9640 5.1364 -8.5190 42 1 4.0206 0.3799 -0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160761736.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:41 Heat of formation + Delta-G solvation = -144.680436 kcal Electronic energy + Delta-G solvation = -25436.801444 eV Core-core repulsion = 21509.159531 eV Total energy + Delta-G solvation = -3927.641913 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 7.89 seconds Orbital eigenvalues (eV) -40.61854 -38.89177 -36.90678 -36.54876 -35.43728 -34.45888 -33.89508 -31.98464 -31.16501 -30.61887 -28.06136 -27.37421 -25.60506 -23.63925 -22.99233 -21.71105 -21.24811 -19.04655 -18.45530 -17.54706 -17.09116 -16.81281 -16.43452 -16.33207 -16.09296 -15.76695 -15.50305 -15.20479 -14.68483 -14.51305 -14.32628 -14.00747 -13.82566 -13.39417 -13.11223 -12.91206 -12.69466 -12.50272 -12.10465 -11.88466 -11.76284 -11.72017 -11.58147 -11.49187 -11.41203 -11.15770 -11.08690 -10.96429 -10.45851 -10.40980 -10.37768 -9.82054 -9.53257 -9.22834 -9.01339 -8.55545 -8.50799 -6.12916 -4.18508 0.75935 0.93661 1.10112 2.87333 3.11476 3.25435 3.31652 3.34089 3.37344 4.12993 4.21689 4.29429 4.37662 4.41826 4.54410 4.66536 4.69129 4.74312 4.75598 4.85052 4.91826 5.07339 5.14518 5.21331 5.22305 5.34962 5.56537 5.60899 5.66915 5.67529 5.89899 5.93422 6.06250 6.18260 6.35755 6.48211 7.02600 7.10205 7.28598 7.30067 7.36454 7.79906 8.17076 8.84838 9.46196 10.98162 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.013622 B = 0.002684 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.029678 B =10429.509197 C =11258.335946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.129 3.871 4 C -0.207 4.207 5 C -0.076 4.076 6 C -0.147 4.147 7 C -0.077 4.077 8 C 0.145 3.855 9 H 0.119 0.881 10 O -0.548 6.548 11 C 0.089 3.911 12 N -1.123 6.123 13 S 2.594 3.406 14 O -0.966 6.966 15 O -0.967 6.967 16 C -0.590 4.590 17 C 0.027 3.973 18 C -0.520 4.520 19 H 0.061 0.939 20 C 0.057 3.943 21 N -0.890 5.890 22 Si 0.900 3.100 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.138 4.138 27 H 0.100 0.900 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.376 0.624 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.417 0.583 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.265 0.735 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.524 -4.627 18.634 26.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.084 3.916 4 C -0.226 4.226 5 C -0.094 4.094 6 C -0.165 4.165 7 C -0.079 4.079 8 C 0.084 3.916 9 H 0.137 0.863 10 O -0.354 6.354 11 C -0.039 4.039 12 N -0.881 5.881 13 S 2.691 3.309 14 O -0.956 6.956 15 O -0.957 6.957 16 C -0.723 4.723 17 C -0.012 4.012 18 C -0.560 4.560 19 H 0.079 0.921 20 C -0.145 4.145 21 N -0.528 5.528 22 Si 0.727 3.273 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.156 4.156 27 H 0.119 0.881 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.146 0.854 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.225 0.775 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.251 0.749 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.616 -6.136 18.351 26.168 hybrid contribution -1.012 2.088 -0.540 2.382 sum -18.628 -4.049 17.812 26.090 Atomic orbital electron populations 1.23072 0.78256 1.04081 1.01369 1.86088 1.21483 1.26827 1.88610 1.18985 0.92229 0.84275 0.96156 1.21277 1.00125 0.92440 1.08713 1.20908 0.94420 0.97119 0.96960 1.20815 0.93958 0.97869 1.03870 1.20217 0.96069 0.92978 0.98594 1.21004 0.88428 0.92657 0.89503 0.86317 1.86644 1.76036 1.18710 1.54027 1.21942 0.80799 1.02879 0.98232 1.55733 1.13985 1.92808 1.25616 1.05536 0.73699 0.78181 0.73475 1.93557 1.32553 1.87856 1.81641 1.93541 1.77547 1.50058 1.74544 1.30443 1.10685 1.18693 1.12480 1.18963 0.95797 0.99858 0.86538 1.20998 1.31197 1.02169 1.01601 0.92078 1.25074 0.94922 0.97173 0.97360 1.69957 1.32571 1.34603 1.15693 0.86468 0.78782 0.83213 0.78791 1.20464 1.21014 1.19786 1.20264 0.91529 0.98183 1.05667 0.88137 0.92669 0.92507 0.85413 0.85472 0.85682 0.77497 0.91104 0.88976 0.74906 0.86435 0.86062 0.94801 0.94811 0.92520 0.84726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.01 10.50 -19.42 -0.20 -3.21 16 3 C 0.13 1.26 6.69 -39.21 -0.26 1.00 16 4 C -0.21 -1.70 9.04 -39.43 -0.36 -2.06 16 5 C -0.08 -0.59 10.04 -39.61 -0.40 -0.99 16 6 C -0.15 -1.19 9.32 -39.56 -0.37 -1.56 16 7 C -0.08 -0.71 4.97 -104.65 -0.52 -1.23 16 8 C 0.14 1.33 3.30 -27.88 -0.09 1.24 16 9 H 0.12 1.08 8.00 -51.93 -0.42 0.67 16 10 O -0.55 -4.91 12.99 -35.23 -0.46 -5.36 16 11 C 0.09 0.95 5.75 -4.04 -0.02 0.92 16 12 N -1.12 -14.16 5.85 -10.61 -0.06 -14.22 16 13 S 2.59 45.60 5.46 -107.50 -0.59 45.02 16 14 O -0.97 -20.02 18.08 -57.54 -1.04 -21.06 16 15 O -0.97 -19.88 17.50 -57.54 -1.01 -20.88 16 16 C -0.59 -11.02 6.01 37.15 0.22 -10.79 16 17 C 0.03 0.70 4.98 -27.89 -0.14 0.56 16 18 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 19 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 22 Si 0.90 21.11 29.54 -169.99 -5.02 16.08 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 C -0.14 -1.38 9.61 -39.43 -0.38 -1.75 16 27 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.24 7.66 -51.93 -0.40 -0.16 16 29 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 30 H 0.13 0.77 6.30 -52.49 -0.33 0.44 16 31 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 32 H 0.13 0.73 6.77 -52.49 -0.36 0.37 16 33 H 0.38 2.20 7.49 45.56 0.34 2.54 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 1.06 7.69 -51.93 -0.40 0.66 16 36 H 0.42 4.69 8.47 -34.48 -0.29 4.40 16 37 H 0.12 1.94 8.14 -51.92 -0.42 1.52 16 38 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 39 H 0.03 0.91 8.14 -51.92 -0.42 0.49 16 40 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.13 1.24 8.04 -52.49 -0.42 0.82 16 LS Contribution 369.65 15.07 5.57 5.57 Total: -1.00 -37.13 369.65 -8.98 -46.10 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.17 Total: 4.31 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: -1.73 Total: -26.61 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.67 Total: -39.95 kcal Atomic # 8 Polarization: -47.81 SS G_CDS: -2.71 Total: -50.52 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 45.60 SS G_CDS: -0.59 Total: 45.02 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.13 -8.98 -46.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160761736.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.576 kcal (2) G-P(sol) polarization free energy of solvation -37.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.89 seconds