Wall clock time and date at job start Tue Mar 31 2020 07:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.44521 * 2 1 4 4 O 1.42998 * 109.44438 * 119.90044 * 2 1 3 5 5 C 1.35983 * 116.71574 * 166.44737 * 4 2 1 6 6 C 1.38392 * 120.67373 * 147.16979 * 5 4 2 7 7 C 1.38318 * 119.87693 * 180.12884 * 6 5 4 8 8 C 1.38281 * 120.25724 * 359.97438 * 7 6 5 9 9 C 1.38284 * 120.19854 * 359.97438 * 8 7 6 10 10 C 1.38503 * 119.81687 * 359.97438 * 9 8 7 11 11 N 1.40215 * 120.73709 * 180.02562 * 10 9 8 12 12 C 1.46496 * 120.50841 * 15.48503 * 11 10 9 13 13 C 1.50702 * 109.47210 * 89.99661 * 12 11 10 14 14 O 1.21294 * 119.99951 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99804 * 179.97438 * 13 12 11 16 16 C 1.37103 * 119.99583 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99887 * 20.22037 * 16 15 13 18 18 C 1.38949 * 119.99924 * 200.21342 * 16 15 13 19 19 N 1.31409 * 119.99624 * 21.44041 * 18 16 15 20 20 Si 1.86794 * 120.00103 * 201.43864 * 18 16 15 21 21 H 1.48502 * 109.47242 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47413 * 119.99889 * 20 18 16 23 23 H 1.48502 * 109.47318 * 240.00290 * 20 18 16 24 24 C 1.46492 * 120.00537 * 0.02562 * 15 13 12 25 25 C 1.47197 * 109.47307 * 83.95047 * 24 15 13 26 26 N 7.69716 * 135.16496 * 224.55088 * 2 1 3 27 27 C 1.35087 * 118.98073 * 195.50812 * 11 10 9 28 28 O 1.21294 * 120.13823 * 181.65055 * 27 11 10 29 29 H 1.09002 * 109.47272 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46977 * 299.93438 * 1 2 3 31 31 H 1.09002 * 109.47105 * 59.92970 * 1 2 3 32 32 H 1.07997 * 120.06124 * 0.09888 * 6 5 4 33 33 H 1.07999 * 119.87450 * 179.71235 * 7 6 5 34 34 H 1.08002 * 119.89846 * 179.97438 * 8 7 6 35 35 H 1.08000 * 120.09075 * 179.97438 * 9 8 7 36 36 H 1.08999 * 109.47603 * 209.99859 * 12 11 10 37 37 H 1.09003 * 109.47399 * 329.99847 * 12 11 10 38 38 H 0.97003 * 119.99584 * 180.02562 * 19 18 16 39 39 H 1.08996 * 109.47601 * 203.95353 * 24 15 13 40 40 H 1.09006 * 109.47080 * 323.95394 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 8 2.0060 -0.6722 1.1689 5 6 3.3230 -1.0103 1.1860 6 6 4.0346 -1.0181 2.3729 7 6 5.3743 -1.3622 2.3709 8 6 6.0054 -1.6990 1.1875 9 6 5.3007 -1.6945 -0.0023 10 6 3.9587 -1.3519 -0.0067 11 7 3.2256 -1.3415 -1.2018 12 6 3.7470 -2.0038 -2.4000 13 6 3.2804 -3.4366 -2.4253 14 8 2.5806 -3.8624 -1.5307 15 7 3.6398 -4.2444 -3.4425 16 6 3.2148 -5.5477 -3.4658 17 1 2.3562 -5.8462 -2.8827 18 6 3.8888 -6.4845 -4.2397 19 7 5.1320 -6.2639 -4.6036 20 14 3.0276 -8.0574 -4.7627 21 1 1.6423 -8.0647 -4.2277 22 1 2.9853 -8.1292 -6.2454 23 1 3.7700 -9.2285 -4.2313 24 6 4.4845 -3.7300 -4.5232 25 6 5.8981 -3.8069 -4.1201 26 7 6.9883 -3.8674 -3.8073 27 6 2.0313 -0.7110 -1.2316 28 8 1.3658 -0.7145 -2.2457 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5128 0.8906 31 1 -0.3633 0.5149 -0.8894 32 1 3.5449 -0.7556 3.2990 33 1 5.9307 -1.3637 3.2965 34 1 7.0518 -1.9663 1.1925 35 1 5.7954 -1.9574 -0.9257 36 1 3.3831 -1.4874 -3.2882 37 1 4.8366 -1.9768 -2.3850 38 1 5.6024 -6.9177 -5.1442 39 1 4.3298 -4.3280 -5.4213 40 1 4.2209 -2.6923 -4.7278 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162011053.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:27 Heat of formation + Delta-G solvation = -17.133234 kcal Electronic energy + Delta-G solvation = -28600.648556 eV Core-core repulsion = 24575.386305 eV Total energy + Delta-G solvation = -4025.262251 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.54080 -39.09137 -38.63572 -37.51480 -35.98888 -35.31102 -34.34091 -32.12249 -31.99042 -30.21712 -29.70500 -28.15282 -27.45223 -25.04899 -23.76039 -23.28081 -22.36495 -19.79672 -19.24829 -19.02621 -18.01486 -17.29278 -16.91396 -16.66162 -16.34416 -15.46136 -15.27100 -14.94203 -14.65805 -14.55701 -14.29140 -14.19719 -13.84846 -13.57474 -13.14581 -13.10696 -12.99028 -12.67140 -12.28235 -12.24487 -12.16441 -11.91227 -11.77091 -11.60426 -11.36610 -11.20780 -11.14187 -11.10205 -10.67317 -10.51769 -10.42037 -10.38435 -9.78675 -9.33057 -8.81762 -8.57880 -8.10371 -7.69000 -6.56717 -4.07234 1.15482 1.31478 2.40172 2.56156 3.04702 3.19861 3.26444 3.28390 3.44957 3.65597 3.74406 3.85206 4.04471 4.07073 4.65833 4.66811 4.73830 4.79612 4.83083 4.99023 5.02945 5.15913 5.26493 5.34337 5.39003 5.50663 5.54164 5.59621 5.63534 5.71541 5.96905 6.01543 6.06698 6.20106 6.37190 6.41136 6.50221 6.67792 6.99428 7.41868 7.42153 7.77270 7.90063 8.21202 8.61860 8.92350 9.10474 9.62686 10.49468 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.013848 B = 0.004374 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.423752 B = 6400.379616 C = 7233.173668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.083 3.917 3 H 0.100 0.900 4 O -0.301 6.301 5 C 0.080 3.920 6 C -0.111 4.111 7 C -0.118 4.118 8 C -0.108 4.108 9 C -0.122 4.122 10 C 0.115 3.885 11 N -0.527 5.527 12 C 0.090 3.910 13 C 0.443 3.557 14 O -0.556 6.556 15 N -0.438 5.438 16 C -0.312 4.312 17 H 0.108 0.892 18 C 0.034 3.966 19 N -0.875 5.875 20 Si 0.927 3.073 21 H -0.267 1.267 22 H -0.278 1.278 23 H -0.282 1.282 24 C 0.218 3.782 25 C 0.242 3.758 26 N -0.466 5.466 27 C 0.495 3.505 28 O -0.502 6.502 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.136 0.864 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.273 0.727 39 H 0.128 0.872 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.619 13.934 6.889 15.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.023 3.977 3 H 0.117 0.883 4 O -0.216 6.216 5 C 0.033 3.967 6 C -0.130 4.130 7 C -0.137 4.137 8 C -0.127 4.127 9 C -0.143 4.143 10 C 0.020 3.980 11 N -0.250 5.250 12 C -0.035 4.035 13 C 0.230 3.770 14 O -0.437 6.437 15 N -0.160 5.160 16 C -0.439 4.439 17 H 0.125 0.875 18 C -0.170 4.170 19 N -0.514 5.514 20 Si 0.753 3.247 21 H -0.191 1.191 22 H -0.204 1.204 23 H -0.208 1.208 24 C 0.090 3.910 25 C -0.077 4.077 26 N -0.146 5.146 27 C 0.282 3.718 28 O -0.376 6.376 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.129 0.871 37 H 0.119 0.881 38 H 0.084 0.916 39 H 0.146 0.854 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.821 13.483 7.182 15.299 hybrid contribution -0.306 -1.171 -0.818 1.461 sum -1.127 12.312 6.364 13.905 Atomic orbital electron populations 1.21704 0.89098 1.04693 1.03633 1.22604 0.98041 0.95763 0.81268 0.88280 1.86205 1.21687 1.74328 1.39382 1.18555 0.83314 1.02119 0.92686 1.20447 0.93546 1.02928 0.96094 1.20918 0.93762 1.00647 0.98365 1.20962 1.00240 0.99859 0.91631 1.20736 0.91497 1.02273 0.99790 1.18078 0.92451 1.02449 0.85031 1.45172 1.19201 1.50627 1.10016 1.21628 1.00129 0.93950 0.87807 1.20259 0.86279 0.87368 0.83131 1.90586 1.40374 1.76041 1.36686 1.43587 1.43660 1.10936 1.17780 1.19729 1.12436 0.82867 1.28833 0.87473 1.25294 0.94540 0.99475 0.97721 1.69837 1.07925 1.37390 1.36213 0.85846 0.79811 0.80634 0.78375 1.19064 1.20355 1.20814 1.18745 0.79247 0.99176 0.93848 1.29281 0.94925 0.90363 0.93112 1.80899 1.13470 1.11743 1.08504 1.21405 0.80173 0.79321 0.90855 1.90726 1.54247 1.59388 1.33258 0.90763 0.90450 0.89108 0.84630 0.85136 0.85227 0.85140 0.87062 0.88086 0.91594 0.85429 0.89780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 9.14 37.16 0.34 -1.21 16 2 C 0.08 1.13 3.69 -27.84 -0.10 1.02 16 3 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 4 O -0.30 -4.56 10.09 -19.69 -0.20 -4.76 16 5 C 0.08 1.23 6.44 -39.09 -0.25 0.97 16 6 C -0.11 -1.39 10.00 -39.50 -0.39 -1.79 16 7 C -0.12 -1.34 10.04 -39.54 -0.40 -1.74 16 8 C -0.11 -1.39 10.04 -39.55 -0.40 -1.78 16 9 C -0.12 -1.89 9.36 -39.47 -0.37 -2.26 16 10 C 0.11 1.93 6.39 -83.49 -0.53 1.39 16 11 N -0.53 -9.50 2.21 -114.48 -0.25 -9.75 16 12 C 0.09 1.64 4.29 -5.19 -0.02 1.62 16 13 C 0.44 10.30 7.63 -10.98 -0.08 10.22 16 14 O -0.56 -15.21 16.10 5.55 0.09 -15.12 16 15 N -0.44 -10.23 2.60 -117.94 -0.31 -10.54 16 16 C -0.31 -8.07 9.27 -14.93 -0.14 -8.21 16 17 H 0.11 2.98 7.43 -52.49 -0.39 2.59 16 18 C 0.03 0.83 4.84 -17.47 -0.08 0.74 16 19 N -0.88 -21.80 9.58 55.50 0.53 -21.27 16 20 Si 0.93 19.68 29.60 -169.99 -5.03 14.65 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 C 0.22 4.20 4.91 -6.83 -0.03 4.16 16 25 C 0.24 5.08 12.82 -20.77 -0.27 4.81 16 26 N -0.47 -10.47 18.54 42.15 0.78 -9.69 16 27 C 0.49 8.64 7.37 -10.80 -0.08 8.56 16 28 O -0.50 -9.74 15.83 5.54 0.09 -9.65 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.97 7.86 -51.93 -0.41 0.56 16 32 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 35 H 0.13 2.03 6.12 -52.49 -0.32 1.71 16 36 H 0.11 1.81 6.77 -51.93 -0.35 1.45 16 37 H 0.10 1.67 5.31 -51.93 -0.28 1.39 16 38 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 39 H 0.13 2.51 6.63 -51.93 -0.34 2.17 16 40 H 0.08 1.23 6.69 -51.93 -0.35 0.88 16 LS Contribution 345.81 15.07 5.21 5.21 Total: -1.00 -33.72 345.81 -6.01 -39.73 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -4.11 Total: 4.65 kcal Atomic # 6 Polarization: 19.34 SS G_CDS: -2.81 Total: 16.53 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: 0.75 Total: -51.24 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.02 Total: -29.53 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.03 Total: 14.65 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.72 -6.01 -39.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162011053.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.601 kcal (2) G-P(sol) polarization free energy of solvation -33.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds