Wall clock time and date at job start Tue Mar 31 2020 07:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.41404 * 2 1 4 4 O 1.42995 * 109.44146 * 240.08410 * 2 1 3 5 5 C 1.35984 * 116.71428 * 286.33756 * 4 2 1 6 6 C 1.38393 * 120.66421 * 147.16496 * 5 4 2 7 7 C 1.38314 * 119.87815 * 180.10191 * 6 5 4 8 8 C 1.38281 * 120.25500 * 359.97438 * 7 6 5 9 9 C 1.38294 * 120.20033 * 359.96750 * 8 7 6 10 10 C 1.38498 * 119.81259 * 0.03276 * 9 8 7 11 11 N 1.40215 * 120.74008 * 180.02562 * 10 9 8 12 12 C 1.46497 * 120.50650 * 15.46269 * 11 10 9 13 13 C 1.50697 * 109.47282 * 89.99889 * 12 11 10 14 14 O 1.21296 * 120.00287 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99993 * 180.27340 * 13 12 11 16 16 C 1.37109 * 120.00175 * 179.72318 * 15 13 12 17 17 H 1.08001 * 119.99440 * 20.22185 * 16 15 13 18 18 C 1.38939 * 120.00157 * 200.21610 * 16 15 13 19 19 N 1.31411 * 120.00394 * 21.43507 * 18 16 15 20 20 Si 1.86801 * 119.99923 * 201.42879 * 18 16 15 21 21 H 1.48496 * 109.47190 * 90.00205 * 20 18 16 22 22 H 1.48505 * 109.47301 * 210.00227 * 20 18 16 23 23 H 1.48496 * 109.47207 * 330.00046 * 20 18 16 24 24 C 1.46501 * 120.00389 * 359.72791 * 15 13 12 25 25 C 1.47201 * 109.46844 * 83.95107 * 24 15 13 26 26 N 7.69157 * 103.71505 * 149.42561 * 2 1 3 27 27 C 1.35087 * 118.98595 * 195.73464 * 11 10 9 28 28 O 1.21289 * 120.13818 * 181.39223 * 27 11 10 29 29 H 1.09002 * 109.47096 * 179.91662 * 1 2 3 30 30 H 1.08999 * 109.47618 * 299.91396 * 1 2 3 31 31 H 1.09000 * 109.47258 * 59.91491 * 1 2 3 32 32 H 1.08006 * 120.06392 * 0.07829 * 6 5 4 33 33 H 1.07999 * 119.87551 * 180.02562 * 7 6 5 34 34 H 1.08001 * 119.90118 * 179.97438 * 8 7 6 35 35 H 1.07997 * 120.09008 * 180.02562 * 9 8 7 36 36 H 1.08998 * 109.47179 * 329.99950 * 12 11 10 37 37 H 1.08996 * 109.47245 * 210.00057 * 12 11 10 38 38 H 0.96994 * 120.00293 * 179.97438 * 19 18 16 39 39 H 1.08996 * 109.47419 * 203.95083 * 24 15 13 40 40 H 1.08998 * 109.46764 * 323.95196 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8923 1.0280 0.0000 4 8 2.0060 -0.6725 -1.1688 5 6 1.8872 -2.0270 -1.1856 6 6 1.6582 -2.7007 -2.3726 7 6 1.5380 -4.0786 -2.3707 8 6 1.6463 -4.7858 -1.1873 9 6 1.8764 -4.1197 0.0026 10 6 1.9976 -2.7401 0.0071 11 7 2.2315 -2.0450 1.2022 12 6 2.6841 -2.7567 2.4000 13 6 4.1905 -2.7915 2.4246 14 8 4.8238 -2.2724 1.5298 15 7 4.8339 -3.4037 3.4383 16 6 6.2044 -3.4403 3.4577 17 1 6.7718 -2.7297 2.8751 18 6 6.8631 -4.3914 4.2271 19 7 6.2396 -5.4899 4.5897 20 14 8.6353 -4.1088 4.7458 21 1 8.6621 -3.3976 6.0491 22 1 9.3260 -5.4164 4.8812 23 1 9.3266 -3.2878 3.7196 24 6 4.0691 -4.0303 4.5193 25 6 3.6667 -5.3868 4.1133 26 7 3.3536 -6.4334 3.8008 27 6 2.0278 -0.7100 1.2337 28 8 2.2477 -0.0842 2.2491 29 1 -0.3633 -1.0277 -0.0015 30 1 -0.3634 0.5125 0.8907 31 1 -0.3634 0.5151 -0.8892 32 1 1.5730 -2.1516 -3.2987 33 1 1.3596 -4.6044 -3.2971 34 1 1.5511 -5.8616 -1.1924 35 1 1.9611 -4.6738 0.9257 36 1 2.2974 -3.7757 2.3851 37 1 2.3180 -2.2422 3.2884 38 1 6.6996 -6.1540 5.1265 39 1 4.6868 -4.0876 5.4156 40 1 3.1804 -3.4348 4.7280 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162011198.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:42 Heat of formation + Delta-G solvation = -17.884135 kcal Electronic energy + Delta-G solvation = -28676.744458 eV Core-core repulsion = 24651.449645 eV Total energy + Delta-G solvation = -4025.294813 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.61963 -39.10767 -38.59192 -37.54904 -35.97832 -35.28625 -34.33714 -32.08513 -31.95473 -30.30486 -29.75529 -28.12084 -27.44004 -25.02371 -24.06523 -23.39244 -22.36032 -19.69844 -19.18112 -19.00263 -18.01543 -17.30293 -16.82482 -16.40777 -16.11228 -15.63961 -15.41418 -15.11042 -14.86247 -14.49714 -14.28042 -14.23081 -13.89946 -13.56305 -13.22790 -13.10132 -12.99750 -12.63063 -12.58836 -12.23213 -12.20324 -11.97501 -11.77855 -11.61383 -11.37283 -11.21672 -11.14695 -11.12140 -10.65855 -10.52202 -10.42541 -10.39541 -9.77888 -9.32307 -8.81853 -8.57827 -8.10559 -7.69155 -6.56384 -4.07251 1.15837 1.31380 2.41181 2.55923 3.06508 3.20093 3.24376 3.31451 3.45145 3.65294 3.73433 3.85005 4.02910 4.06981 4.62351 4.65553 4.71342 4.78523 4.82685 4.98554 5.02412 5.12558 5.23158 5.31776 5.35510 5.40534 5.49400 5.52560 5.60130 5.66858 5.77874 5.96736 6.04429 6.20228 6.37213 6.41151 6.50265 6.66636 6.99189 7.41915 7.42178 7.76786 7.89248 8.21275 8.61673 8.92390 9.10526 9.62643 10.49785 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.015101 B = 0.004234 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.678344 B = 6611.303363 C = 7186.252999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.082 3.918 3 H 0.148 0.852 4 O -0.298 6.298 5 C 0.081 3.919 6 C -0.112 4.112 7 C -0.118 4.118 8 C -0.108 4.108 9 C -0.123 4.123 10 C 0.116 3.884 11 N -0.525 5.525 12 C 0.090 3.910 13 C 0.443 3.557 14 O -0.556 6.556 15 N -0.438 5.438 16 C -0.313 4.313 17 H 0.108 0.892 18 C 0.034 3.966 19 N -0.875 5.875 20 Si 0.928 3.072 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.269 1.269 24 C 0.217 3.783 25 C 0.242 3.758 26 N -0.467 5.467 27 C 0.498 3.502 28 O -0.506 6.506 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.274 0.726 39 H 0.128 0.872 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.365 5.493 -6.946 16.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.023 3.977 3 H 0.166 0.834 4 O -0.213 6.213 5 C 0.034 3.966 6 C -0.131 4.131 7 C -0.137 4.137 8 C -0.127 4.127 9 C -0.143 4.143 10 C 0.021 3.979 11 N -0.248 5.248 12 C -0.035 4.035 13 C 0.230 3.770 14 O -0.437 6.437 15 N -0.160 5.160 16 C -0.440 4.440 17 H 0.125 0.875 18 C -0.170 4.170 19 N -0.514 5.514 20 Si 0.755 3.245 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.193 1.193 24 C 0.090 3.910 25 C -0.076 4.076 26 N -0.147 5.147 27 C 0.286 3.714 28 O -0.380 6.380 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.153 0.847 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.085 0.915 39 H 0.146 0.854 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.219 4.578 -7.245 15.754 hybrid contribution 1.247 0.019 0.838 1.502 sum -11.972 4.596 -6.407 14.335 Atomic orbital electron populations 1.22341 0.92725 1.03870 1.04344 1.22852 0.96174 0.97546 0.81148 0.83425 1.86259 1.79230 1.16234 1.39588 1.18540 1.02890 0.82507 0.92632 1.20457 1.02209 0.94269 0.96134 1.20917 1.01478 0.92965 0.98346 1.20961 0.99970 1.00135 0.91639 1.20737 1.02402 0.91420 0.99784 1.18059 1.02228 0.92619 0.85010 1.45136 1.62265 1.07363 1.10040 1.21629 0.95721 0.98365 0.87831 1.20247 0.88431 0.85206 0.83155 1.90588 1.67534 1.48961 1.36603 1.43580 1.06424 1.47987 1.17961 1.19703 0.79451 1.15728 1.29072 0.87473 1.25290 1.00515 0.93494 0.97689 1.69824 1.38953 1.06295 1.36302 0.85879 0.81587 0.77777 0.79285 1.20039 1.21034 1.19301 1.18749 0.95909 0.82560 0.93806 1.29293 0.90093 0.95144 0.93107 1.80918 1.13458 1.11759 1.08526 1.21322 0.77661 0.81642 0.90799 1.90743 1.49309 1.64638 1.33330 0.91558 0.89991 0.89828 0.84658 0.85167 0.85252 0.85158 0.88069 0.87067 0.91533 0.85422 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 9.29 37.16 0.35 -1.36 16 2 C 0.08 1.09 3.82 -27.84 -0.11 0.99 16 3 H 0.15 1.69 8.14 -51.93 -0.42 1.26 16 4 O -0.30 -4.45 10.18 -19.69 -0.20 -4.65 16 5 C 0.08 1.22 5.85 -39.09 -0.23 0.99 16 6 C -0.11 -1.38 10.00 -39.50 -0.39 -1.77 16 7 C -0.12 -1.33 10.04 -39.54 -0.40 -1.73 16 8 C -0.11 -1.38 10.04 -39.54 -0.40 -1.77 16 9 C -0.12 -1.88 9.36 -39.46 -0.37 -2.25 16 10 C 0.12 1.92 6.39 -83.49 -0.53 1.39 16 11 N -0.53 -9.38 2.21 -114.49 -0.25 -9.63 16 12 C 0.09 1.63 4.29 -5.20 -0.02 1.61 16 13 C 0.44 10.30 7.63 -10.99 -0.08 10.21 16 14 O -0.56 -15.21 16.10 5.54 0.09 -15.12 16 15 N -0.44 -10.22 2.60 -117.94 -0.31 -10.53 16 16 C -0.31 -8.09 9.27 -14.93 -0.14 -8.23 16 17 H 0.11 2.98 7.43 -52.49 -0.39 2.59 16 18 C 0.03 0.84 4.84 -17.47 -0.08 0.76 16 19 N -0.88 -21.78 9.58 55.49 0.53 -21.25 16 20 Si 0.93 19.70 29.60 -169.99 -5.03 14.67 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 24 C 0.22 4.19 4.91 -6.83 -0.03 4.16 16 25 C 0.24 5.08 12.80 -20.75 -0.27 4.81 16 26 N -0.47 -10.45 18.54 42.16 0.78 -9.67 16 27 C 0.50 8.64 6.91 -10.80 -0.07 8.57 16 28 O -0.51 -9.93 16.77 5.55 0.09 -9.84 16 29 H 0.07 0.68 7.81 -51.93 -0.41 0.28 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.14 1.34 8.06 -52.48 -0.42 0.91 16 33 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 35 H 0.13 2.02 6.12 -52.49 -0.32 1.70 16 36 H 0.10 1.66 5.29 -51.93 -0.27 1.39 16 37 H 0.11 1.80 6.77 -51.93 -0.35 1.45 16 38 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 39 H 0.13 2.51 6.63 -51.93 -0.34 2.17 16 40 H 0.08 1.23 6.70 -51.93 -0.35 0.88 16 LS Contribution 345.99 15.07 5.21 5.21 Total: -1.00 -33.82 345.99 -5.97 -39.79 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -4.11 Total: 4.65 kcal Atomic # 6 Polarization: 19.15 SS G_CDS: -2.78 Total: 16.36 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 0.75 Total: -51.08 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.02 Total: -29.61 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.67 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.82 -5.97 -39.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162011198.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.903 kcal (2) G-P(sol) polarization free energy of solvation -33.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds