Wall clock time and date at job start Tue Mar 31 2020 04:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 116.99949 * 2 1 4 4 O 1.20831 * 120.00312 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99962 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.47226 * 180.02562 * 5 3 2 7 7 C 1.37107 * 119.99520 * 270.00110 * 6 5 3 8 8 H 1.07997 * 119.99589 * 198.17519 * 7 6 5 9 9 C 1.38951 * 119.99868 * 18.18153 * 7 6 5 10 10 N 1.31407 * 120.00422 * 3.56425 * 9 7 6 11 11 Si 1.86807 * 119.99297 * 183.56431 * 9 7 6 12 12 H 1.48501 * 109.47062 * 60.00030 * 11 9 7 13 13 H 1.48503 * 109.46772 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47236 * 299.99776 * 11 9 7 15 15 C 1.34770 * 120.00146 * 90.00037 * 6 5 3 16 16 O 1.21293 * 119.99893 * 355.15198 * 15 6 5 17 17 C 1.50707 * 119.99953 * 175.15765 * 15 6 5 18 18 O 1.42900 * 109.46917 * 184.88479 * 17 15 6 19 19 C 1.36003 * 116.99475 * 184.80695 * 18 17 15 20 20 C 1.38630 * 120.04140 * 354.69260 * 19 18 17 21 21 C 1.38186 * 119.99611 * 180.27463 * 20 19 18 22 22 C 1.38458 * 120.06602 * 359.42762 * 21 20 19 23 23 F 1.35102 * 119.96274 * 180.29547 * 22 21 20 24 24 C 1.38446 * 120.07778 * 0.27903 * 22 21 20 25 25 C 1.38340 * 120.00104 * 0.02562 * 24 22 21 26 26 F 1.35099 * 120.03263 * 179.97438 * 25 24 22 27 27 H 1.09006 * 109.46715 * 59.99758 * 1 2 3 28 28 H 1.08999 * 109.46711 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47206 * 299.99826 * 1 2 3 30 30 H 1.08999 * 109.47311 * 60.00849 * 5 3 2 31 31 H 1.08998 * 109.47319 * 300.00258 * 5 3 2 32 32 H 0.97000 * 119.99650 * 185.00599 * 10 9 7 33 33 H 1.09001 * 109.47159 * 64.88085 * 17 15 6 34 34 H 1.09002 * 109.46607 * 304.88724 * 17 15 6 35 35 H 1.08000 * 120.00780 * 359.97438 * 20 19 18 36 36 H 1.07995 * 119.96863 * 179.70218 * 21 20 19 37 37 H 1.07995 * 119.99602 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9818 2.6797 0.0011 7 6 4.1765 3.3373 -1.1861 8 1 4.7511 4.2515 -1.2090 9 6 3.6346 2.8276 -2.3597 10 7 2.8772 1.7544 -2.3219 11 14 3.9828 3.6682 -3.9912 12 1 5.4462 3.6719 -4.2437 13 1 3.2944 2.9339 -5.0831 14 1 3.4850 5.0665 -3.9439 15 6 4.1724 3.3257 1.1684 16 8 3.9158 2.7722 2.2168 17 6 4.7042 4.7358 1.1713 18 8 4.9253 5.1587 2.5182 19 6 5.3119 6.4493 2.7044 20 6 5.5810 7.2579 1.6110 21 6 5.9791 8.5674 1.8014 22 6 6.0983 9.0767 3.0834 23 9 6.4819 10.3591 3.2670 24 6 5.8244 8.2736 4.1773 25 6 5.4316 6.9604 3.9903 26 9 5.1647 6.1760 5.0574 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 3.9565 0.7807 -0.8892 31 1 3.9557 0.7809 0.8908 32 1 2.5586 1.3564 -3.1471 33 1 3.9803 5.3981 0.6966 34 1 5.6442 4.7706 0.6205 35 1 5.4842 6.8630 0.6104 36 1 6.1933 9.1954 0.9494 37 1 5.9173 8.6724 5.1766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172359091.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:46 Heat of formation + Delta-G solvation = -196.834858 kcal Electronic energy + Delta-G solvation = -27969.921542 eV Core-core repulsion = 23350.344563 eV Total energy + Delta-G solvation = -4619.576979 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.095 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.01703 -48.79845 -40.09389 -39.41104 -38.33787 -37.00721 -35.44787 -34.66286 -31.74500 -31.04696 -30.10541 -28.98950 -27.39331 -26.10057 -24.71157 -23.20761 -22.50223 -20.42590 -19.48422 -18.58172 -17.92086 -17.66731 -16.87295 -16.66195 -16.29974 -16.14445 -15.71179 -15.64646 -15.42463 -15.18428 -15.05164 -14.86512 -14.51899 -14.43801 -14.29029 -13.63749 -13.43530 -12.94292 -12.56489 -12.48227 -12.34237 -12.22304 -11.83175 -11.62457 -11.41800 -11.35309 -11.24190 -10.88934 -10.75008 -10.70435 -10.57062 -9.84042 -9.67644 -9.22379 -9.10396 -8.77791 -8.16775 -8.12184 -6.61217 -4.24676 0.83158 0.96011 2.92422 2.97255 3.07411 3.08676 3.26918 3.37842 3.69501 3.81517 3.90335 3.97921 4.26825 4.42643 4.62248 4.74045 4.85454 4.91525 5.26874 5.47618 5.58637 5.65310 5.69554 5.75356 5.79104 5.82257 5.89164 5.93562 5.94835 6.20264 6.38738 6.49176 6.70573 7.05098 7.32880 7.35760 7.52942 8.03558 8.78252 9.07369 9.15688 9.52413 10.41484 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.014317 B = 0.003502 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.220606 B = 7993.188489 C = 9514.778891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.374 6.374 3 C 0.493 3.507 4 O -0.511 6.511 5 C 0.161 3.839 6 N -0.426 5.426 7 C -0.336 4.336 8 H 0.102 0.898 9 C 0.042 3.958 10 N -0.880 5.880 11 Si 0.936 3.064 12 H -0.271 1.271 13 H -0.281 1.281 14 H -0.272 1.272 15 C 0.471 3.529 16 O -0.577 6.577 17 C 0.058 3.942 18 O -0.279 6.279 19 C 0.103 3.897 20 C -0.158 4.158 21 C -0.119 4.119 22 C 0.079 3.921 23 F -0.137 7.137 24 C -0.154 4.154 25 C 0.096 3.904 26 F -0.122 7.122 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.049 0.951 30 H 0.136 0.864 31 H 0.079 0.921 32 H 0.277 0.723 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.153 0.847 36 H 0.144 0.856 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.588 6.933 2.637 8.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.291 6.291 3 C 0.335 3.665 4 O -0.396 6.396 5 C 0.036 3.964 6 N -0.147 5.147 7 C -0.463 4.463 8 H 0.120 0.880 9 C -0.162 4.162 10 N -0.519 5.519 11 Si 0.762 3.238 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.197 1.197 15 C 0.258 3.742 16 O -0.460 6.460 17 C -0.019 4.019 18 O -0.191 6.191 19 C 0.054 3.946 20 C -0.177 4.177 21 C -0.138 4.138 22 C 0.059 3.941 23 F -0.116 7.116 24 C -0.173 4.173 25 C 0.076 3.924 26 F -0.100 7.100 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.068 0.932 30 H 0.153 0.847 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.171 0.829 36 H 0.162 0.838 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.030 6.717 3.190 8.459 hybrid contribution -0.240 0.644 -1.128 1.321 sum 3.790 7.362 2.062 8.533 Atomic orbital electron populations 1.22918 0.78830 1.01759 1.01532 1.86450 1.21537 1.35451 1.85689 1.23781 0.92153 0.80508 0.70103 1.90503 1.66585 1.36451 1.46074 1.20630 0.87419 0.84385 1.03922 1.43238 1.57951 1.08755 1.04752 1.19635 1.32740 1.09847 0.84063 0.87996 1.25253 0.94066 0.96533 1.00351 1.69561 1.32210 1.21043 1.29108 0.85845 0.78562 0.79256 0.80143 1.19643 1.20631 1.19678 1.19466 0.83706 0.86660 0.84350 1.90620 1.55961 1.67927 1.31507 1.22554 1.01965 0.96829 0.80601 1.86255 1.81168 1.21914 1.29743 1.19180 0.96899 0.85803 0.92678 1.21151 1.03555 0.93911 0.99038 1.20990 1.00845 0.95928 0.95997 1.17110 1.03910 0.79665 0.93367 1.91502 1.88971 1.34968 1.96126 1.20828 1.04044 0.92083 1.00367 1.16558 1.05569 0.88708 0.81545 1.91553 1.91473 1.73525 1.53445 0.92757 0.89630 0.93200 0.84675 0.90319 0.91203 0.89020 0.89426 0.82930 0.83778 0.83006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.84 16 2 O -0.37 -8.02 10.57 -39.24 -0.41 -8.43 16 3 C 0.49 12.06 5.86 36.01 0.21 12.27 16 4 O -0.51 -14.01 15.86 -18.75 -0.30 -14.31 16 5 C 0.16 3.76 5.21 -5.19 -0.03 3.73 16 6 N -0.43 -10.18 2.11 -116.09 -0.25 -10.42 16 7 C -0.34 -7.72 9.26 -14.93 -0.14 -7.85 16 8 H 0.10 2.07 6.42 -52.49 -0.34 1.73 16 9 C 0.04 0.97 5.29 -17.47 -0.09 0.88 16 10 N -0.88 -21.37 8.18 55.50 0.45 -20.91 16 11 Si 0.94 18.01 29.56 -169.99 -5.02 12.99 16 12 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 13 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 14 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 15 C 0.47 11.14 7.69 -10.98 -0.08 11.06 16 16 O -0.58 -15.44 16.14 -14.31 -0.23 -15.67 16 17 C 0.06 1.09 3.70 36.01 0.13 1.22 16 18 O -0.28 -5.39 9.54 -39.61 -0.38 -5.76 16 19 C 0.10 1.60 6.68 -39.20 -0.26 1.33 16 20 C -0.16 -1.96 9.03 -39.46 -0.36 -2.32 16 21 C -0.12 -1.28 10.02 -39.52 -0.40 -1.68 16 22 C 0.08 0.91 7.30 -39.42 -0.29 0.62 16 23 F -0.14 -1.57 17.27 2.25 0.04 -1.53 16 24 C -0.15 -1.82 10.00 -39.47 -0.39 -2.22 16 25 C 0.10 1.42 7.31 -39.30 -0.29 1.13 16 26 F -0.12 -2.01 17.11 2.25 0.04 -1.97 16 27 H 0.05 0.97 8.13 -51.93 -0.42 0.55 16 28 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.05 0.86 8.13 -51.93 -0.42 0.43 16 30 H 0.14 3.09 6.31 -51.93 -0.33 2.77 16 31 H 0.08 1.74 7.49 -51.93 -0.39 1.35 16 32 H 0.28 6.48 8.32 -40.82 -0.34 6.14 16 33 H 0.09 1.60 7.62 -51.93 -0.40 1.21 16 34 H 0.09 1.39 7.19 -51.93 -0.37 1.01 16 35 H 0.15 1.67 6.32 -52.49 -0.33 1.34 16 36 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 37 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 335.75 15.07 5.06 5.06 Total: -1.00 -31.18 335.75 -5.32 -36.50 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -3.40 Total: 4.44 kcal Atomic # 6 Polarization: 20.93 SS G_CDS: -0.92 Total: 20.02 kcal Atomic # 7 Polarization: -31.54 SS G_CDS: 0.21 Total: -31.33 kcal Atomic # 8 Polarization: -42.85 SS G_CDS: -1.32 Total: -44.17 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.08 Total: -3.50 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.02 Total: 12.99 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.18 -5.32 -36.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172359091.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.339 kcal (2) G-P(sol) polarization free energy of solvation -31.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds