Wall clock time and date at job start Tue Mar 31 2020 05:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 110.71914 * 2 1 4 4 C 1.53677 * 110.65700 * 236.93094 * 2 1 3 5 5 N 1.44598 * 111.15247 * 241.60427 * 4 2 1 6 6 C 1.28263 * 119.97680 * 359.89468 * 5 4 2 7 7 N 1.37566 * 125.05790 * 180.10509 * 6 5 4 8 8 C 1.46967 * 120.59414 * 179.71993 * 7 6 5 9 9 C 1.53809 * 108.40037 * 124.75784 * 8 7 6 10 10 N 1.46972 * 108.57851 * 49.63523 * 9 8 7 11 11 C 1.34780 * 120.59241 * 124.62278 * 10 9 8 12 12 O 1.21278 * 119.99796 * 180.02562 * 11 10 9 13 13 C 1.50704 * 119.99792 * 0.02642 * 11 10 9 14 14 S 1.80997 * 109.46670 * 179.97438 * 13 11 10 15 15 C 1.76204 * 100.00013 * 179.97438 * 14 13 11 16 16 H 1.08005 * 119.99783 * 0.02562 * 15 14 13 17 17 C 1.38797 * 120.00166 * 179.97438 * 15 14 13 18 18 N 1.31631 * 120.00184 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99786 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46942 * 90.00197 * 19 17 15 21 21 H 1.48499 * 109.46785 * 210.00001 * 19 17 15 22 22 H 1.48500 * 109.47242 * 330.00149 * 19 17 15 23 23 C 1.46961 * 118.81351 * 304.65106 * 10 9 8 24 24 C 1.46970 * 120.59481 * 0.02562 * 7 6 5 25 25 S 1.76759 * 109.92912 * 0.10247 * 6 5 4 26 26 H 1.09005 * 109.46796 * 183.06889 * 1 2 3 27 27 H 1.08998 * 109.46635 * 303.07273 * 1 2 3 28 28 H 1.08999 * 109.46957 * 63.07008 * 1 2 3 29 29 H 1.09002 * 109.13661 * 2.02445 * 4 2 1 30 30 H 1.09001 * 109.13345 * 121.19004 * 4 2 1 31 31 H 1.09000 * 109.60619 * 244.54247 * 8 7 6 32 32 H 1.08996 * 109.61233 * 5.04821 * 8 7 6 33 33 H 1.08994 * 109.74180 * 289.85286 * 9 8 7 34 34 H 1.09003 * 109.67608 * 169.38408 * 9 8 7 35 35 H 1.08998 * 109.47200 * 299.99494 * 13 11 10 36 36 H 1.09005 * 109.47270 * 59.99828 * 13 11 10 37 37 H 0.97001 * 119.99906 * 180.02562 * 18 17 15 38 38 H 1.08998 * 109.60583 * 295.47881 * 23 10 9 39 39 H 1.09000 * 109.75117 * 175.05586 * 23 10 9 40 40 H 1.09000 * 109.60686 * 354.94219 * 24 7 6 41 41 H 1.08998 * 109.61204 * 115.28830 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9157 1.0194 0.0000 4 6 2.0722 -0.7846 -1.2050 5 7 2.8563 -1.9217 -0.7773 6 6 3.0184 -2.1543 0.4736 7 7 3.7429 -3.2010 0.9953 8 6 3.8697 -3.3714 2.4496 9 6 3.3908 -4.7863 2.8161 10 7 4.0569 -5.7506 1.9292 11 6 4.7675 -6.7754 2.4404 12 8 5.3131 -7.5646 1.6985 13 6 4.8839 -6.9407 3.9338 14 16 5.8926 -8.3976 4.3026 15 6 5.8641 -8.3516 6.0638 16 1 5.3231 -7.5690 6.5748 17 6 6.5361 -9.3218 6.7943 18 7 7.1952 -10.2760 6.1715 19 14 6.5053 -9.2734 8.6615 20 1 5.3456 -10.0570 9.1579 21 1 7.7623 -9.8591 9.1926 22 1 6.3834 -7.8656 9.1182 23 6 3.9348 -5.5769 0.4750 24 6 4.4095 -4.1649 0.1084 25 16 2.1729 -0.9306 1.4285 26 1 -0.3633 -1.0263 0.0550 27 1 -0.3632 0.5608 0.8612 28 1 -0.3633 0.4654 -0.9162 29 1 1.2353 -1.1347 -1.8093 30 1 2.6972 -0.1261 -1.8082 31 1 4.9122 -3.2477 2.7428 32 1 3.2533 -2.6313 2.9598 33 1 2.3109 -4.8549 2.6856 34 1 3.6486 -5.0041 3.8526 35 1 5.3538 -6.0553 4.3618 36 1 3.8904 -7.0687 4.3637 37 1 7.6645 -10.9542 6.6821 38 1 2.8935 -5.7017 0.1779 39 1 4.5522 -6.3148 -0.0372 40 1 4.1495 -3.9489 -0.9278 41 1 5.4895 -4.0941 0.2371 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174404550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:45 Heat of formation + Delta-G solvation = 5.491999 kcal Electronic energy + Delta-G solvation = -23124.238524 eV Core-core repulsion = 19678.154198 eV Total energy + Delta-G solvation = -3446.084325 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 329.097 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.13313 -38.60077 -37.28666 -34.72965 -32.51978 -32.44764 -32.00436 -29.46410 -27.92193 -26.16422 -25.50972 -24.16544 -23.53818 -22.17195 -20.44274 -19.09515 -18.21505 -17.50858 -16.79976 -16.20549 -15.83538 -15.76800 -15.48863 -15.40590 -14.88967 -14.82219 -14.11734 -14.01180 -13.93662 -13.71904 -13.32635 -13.10296 -12.84263 -12.68398 -12.49521 -12.09918 -11.94481 -11.81736 -11.75935 -11.68679 -11.41390 -11.08043 -11.04330 -10.89198 -10.77425 -9.83090 -9.47537 -9.41211 -9.09290 -9.03759 -8.40060 -8.25858 -8.03686 -6.53039 -6.23677 -3.94734 0.86711 1.61874 1.90769 2.45326 2.92957 2.98140 3.21071 3.24409 3.28926 3.54024 3.96802 4.17885 4.22491 4.32565 4.56899 4.61803 4.73911 4.83437 4.91706 5.04118 5.05275 5.11291 5.13157 5.17000 5.26180 5.30192 5.33090 5.36398 5.54836 5.57271 5.59332 5.72964 5.76977 5.83201 6.05487 6.32305 6.48734 6.88809 7.44436 7.57353 7.57490 8.32879 8.47164 9.21648 10.83687 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.025838 B = 0.002395 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.429761 B =11686.679434 C =12526.813129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.082 4.082 3 H 0.113 0.887 4 C 0.073 3.927 5 N -0.616 5.616 6 C 0.446 3.554 7 N -0.580 5.580 8 C 0.111 3.889 9 C 0.096 3.904 10 N -0.621 5.621 11 C 0.536 3.464 12 O -0.513 6.513 13 C -0.152 4.152 14 S -0.060 6.060 15 C -0.535 4.535 16 H 0.073 0.927 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C 0.100 3.900 24 C 0.117 3.883 25 S -0.207 6.207 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.269 0.731 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.945 22.053 -11.904 28.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.213 4.213 3 H 0.131 0.869 4 C -0.060 4.060 5 N -0.347 5.347 6 C 0.060 3.940 7 N -0.301 5.301 8 C -0.013 4.013 9 C -0.029 4.029 10 N -0.358 5.358 11 C 0.324 3.676 12 O -0.387 6.387 13 C -0.302 4.302 14 S 0.167 5.833 15 C -0.683 4.683 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.502 5.502 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.197 1.197 23 C -0.024 4.024 24 C -0.008 4.008 25 S 0.021 5.979 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.093 0.907 34 H 0.123 0.877 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.868 20.514 -12.559 26.822 hybrid contribution -0.878 1.358 1.443 2.167 sum -12.747 21.872 -11.117 27.649 Atomic orbital electron populations 1.21905 0.91178 1.03396 1.02839 1.24686 1.00455 1.02250 0.93942 0.86867 1.22531 0.97163 0.89727 0.96587 1.69805 1.28131 1.23180 1.13575 1.23413 0.91117 0.90030 0.89468 1.45979 1.52647 1.25372 1.06086 1.22263 1.02930 0.97592 0.78501 1.22190 0.97660 0.87285 0.95762 1.48049 1.53187 1.28366 1.06217 1.20385 0.76955 0.79566 0.90664 1.90698 1.45037 1.42033 1.60901 1.23562 1.05934 1.07136 0.93603 1.85435 1.63546 1.27591 1.06761 1.22849 1.38440 1.16032 0.91028 0.90913 1.24996 0.94513 0.94547 0.99530 1.70016 1.30819 1.13359 1.36038 0.86168 0.77783 0.78447 0.83105 1.20262 1.20752 1.19674 1.21945 1.02224 0.96695 0.81530 1.22117 0.96842 0.86810 0.95053 1.86626 1.63382 1.31145 1.16780 0.91413 0.91515 0.90878 0.89115 0.89337 0.89969 0.88832 0.90742 0.87700 0.89175 0.89177 0.92159 0.91340 0.87518 0.87734 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.70 9.08 37.16 0.34 -0.36 16 2 C -0.08 -0.56 3.99 -26.38 -0.11 -0.66 16 3 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 4 C 0.07 0.58 7.25 -4.71 -0.03 0.55 16 5 N -0.62 -6.77 9.84 -62.20 -0.61 -7.38 16 6 C 0.45 4.83 7.96 -89.84 -0.72 4.11 16 7 N -0.58 -6.12 3.02 -173.38 -0.52 -6.64 16 8 C 0.11 1.04 6.66 -3.37 -0.02 1.02 16 9 C 0.10 1.00 6.52 -3.36 -0.02 0.97 16 10 N -0.62 -8.47 2.95 -172.19 -0.51 -8.98 16 11 C 0.54 9.81 7.72 -10.98 -0.08 9.72 16 12 O -0.51 -11.37 15.27 5.56 0.08 -11.28 16 13 C -0.15 -2.96 4.50 36.01 0.16 -2.80 16 14 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 15 C -0.54 -14.96 9.50 30.94 0.29 -14.67 16 16 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 17 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 18 N -0.87 -25.90 13.22 55.49 0.73 -25.17 16 19 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 C 0.10 1.20 6.59 -3.58 -0.02 1.17 16 24 C 0.12 1.24 6.66 -3.57 -0.02 1.22 16 25 S -0.21 -1.92 21.02 -107.50 -2.26 -4.18 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.64 7.65 -51.93 -0.40 0.24 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.09 0.78 6.46 -51.93 -0.34 0.45 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.10 1.04 5.91 -51.93 -0.31 0.74 16 35 H 0.09 1.60 7.72 -51.92 -0.40 1.20 16 36 H 0.09 1.62 7.91 -51.91 -0.41 1.21 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.11 1.41 7.00 -51.93 -0.36 1.05 16 40 H 0.10 1.09 7.20 -51.93 -0.37 0.71 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 357.94 15.07 5.39 5.39 Total: -1.00 -34.26 357.94 -11.20 -45.46 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -5.94 Total: -1.77 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -0.33 Total: 2.26 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -0.91 Total: -48.17 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.08 Total: -11.28 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -4.47 Total: -7.99 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.26 -11.20 -45.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174404550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.951 kcal (2) G-P(sol) polarization free energy of solvation -34.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds