Wall clock time and date at job start Tue Mar 31 2020 06:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46961 * 182.20641 * 3 2 1 5 5 N 1.46499 * 109.47055 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00123 * 270.00331 * 5 4 3 7 7 C 1.50702 * 109.46904 * 269.99929 * 6 5 4 8 8 H 1.07993 * 120.00490 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99735 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00050 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 119.99825 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47634 * 59.99423 * 11 9 7 13 13 H 1.48503 * 109.47157 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47225 * 299.99175 * 11 9 7 15 15 C 1.34779 * 119.99707 * 90.00663 * 5 4 3 16 16 O 1.21282 * 119.99922 * 180.02562 * 15 5 4 17 17 C 1.50699 * 120.00037 * 359.97438 * 15 5 4 18 18 C 1.53006 * 109.46866 * 180.02562 * 17 15 5 19 19 N 1.46500 * 109.46998 * 179.97438 * 18 17 15 20 20 C 1.47069 * 126.30253 * 274.69225 * 19 18 17 21 21 C 1.54312 * 109.97218 * 150.90232 * 20 19 18 22 22 C 1.55611 * 104.18855 * 45.50518 * 21 20 19 23 23 S 1.66999 * 126.30237 * 94.99687 * 19 18 17 24 24 O 1.42100 * 105.13628 * 298.89448 * 23 19 18 25 25 O 1.42096 * 105.13093 * 68.56859 * 23 19 18 26 26 H 1.09005 * 109.47093 * 62.21584 * 3 2 1 27 27 H 1.09001 * 109.47290 * 302.21103 * 3 2 1 28 28 H 1.09002 * 109.47160 * 60.00457 * 4 3 2 29 29 H 1.09001 * 109.47495 * 300.00336 * 4 3 2 30 30 H 1.08991 * 109.47410 * 30.00046 * 6 5 4 31 31 H 1.09007 * 109.47039 * 150.00320 * 6 5 4 32 32 H 0.97004 * 119.99848 * 180.02562 * 10 9 7 33 33 H 1.09000 * 109.47247 * 60.00371 * 17 15 5 34 34 H 1.09001 * 109.47358 * 299.99798 * 17 15 5 35 35 H 1.08993 * 109.46955 * 300.00219 * 18 17 15 36 36 H 1.09000 * 109.47050 * 60.00048 * 18 17 15 37 37 H 1.09001 * 109.35331 * 271.18457 * 20 19 18 38 38 H 1.08997 * 109.35581 * 30.82396 * 20 19 18 39 39 H 1.09005 * 110.64826 * 286.77454 * 21 20 19 40 40 H 1.09001 * 110.38801 * 164.11021 * 21 20 19 41 41 H 1.09004 * 111.16547 * 204.06066 * 22 21 20 42 42 H 1.08994 * 111.16562 * 79.79827 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1173 1.4423 0.0555 5 7 4.5822 1.4430 0.0562 6 6 5.3143 1.3946 1.3242 7 6 5.5646 2.7978 1.8136 8 1 5.2132 3.6412 1.2379 9 6 6.2423 3.0047 2.9964 10 7 6.6698 1.9777 3.6977 11 14 6.5520 4.7440 3.6033 12 1 5.2538 5.4355 3.8078 13 1 7.2941 4.6950 4.8887 14 1 7.3539 5.4843 2.5963 15 6 5.2566 1.4882 -1.1099 16 8 6.4694 1.4882 -1.1095 17 6 4.5035 1.5374 -2.4144 18 6 5.4983 1.5821 -3.5761 19 7 4.7663 1.6294 -4.8442 20 6 4.2482 0.4752 -5.5941 21 6 2.9958 0.8869 -6.3962 22 6 3.3935 2.2382 -7.0575 23 16 4.3727 3.0034 -5.7080 24 8 3.5450 3.7639 -4.8386 25 8 5.6112 3.5051 -6.1913 26 1 2.9715 -0.4782 -0.9092 27 1 2.9716 -0.5470 0.8695 28 1 2.7538 1.9213 0.9647 29 1 2.7536 1.9899 -0.8140 30 1 4.7252 0.8517 2.0633 31 1 6.2670 0.8866 1.1746 32 1 7.1462 2.1233 4.5300 33 1 3.8762 2.4285 -2.4383 34 1 3.8777 0.6498 -2.5064 35 1 6.1245 2.4695 -3.4842 36 1 6.1253 0.6908 -3.5520 37 1 5.0163 0.1146 -6.2782 38 1 3.9849 -0.3200 -4.8967 39 1 2.1421 1.0241 -5.7324 40 1 2.7710 0.1410 -7.1586 41 1 2.5127 2.8358 -7.2922 42 1 4.0052 2.0769 -7.9451 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195043512.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:51 Heat of formation + Delta-G solvation = -70.271379 kcal Electronic energy + Delta-G solvation = -26340.189177 eV Core-core repulsion = 22448.066634 eV Total energy + Delta-G solvation = -3892.122543 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 16.88 seconds Orbital eigenvalues (eV) -39.40355 -37.65364 -37.18472 -36.86272 -36.05167 -35.28105 -34.01212 -32.85462 -30.84809 -30.33354 -27.44664 -26.49453 -24.28681 -23.91638 -22.53992 -21.96914 -19.07467 -18.50789 -17.67135 -17.52690 -17.20173 -16.44857 -16.23698 -16.07826 -15.56406 -15.12507 -14.81451 -14.72223 -14.66872 -14.36315 -14.01293 -13.83315 -13.62015 -13.11942 -12.96956 -12.62661 -12.52472 -12.41872 -12.25696 -12.15973 -12.11645 -12.05252 -11.78776 -11.70294 -11.51438 -11.25658 -11.02774 -10.96988 -10.84995 -10.62910 -10.58173 -10.17381 -9.70803 -9.37552 -8.93939 -8.44910 -7.84673 -6.07097 -4.11501 -0.04500 2.25194 2.72629 2.80760 3.28622 3.33430 3.37423 3.37796 3.42205 3.51761 3.68997 3.92755 4.12878 4.22095 4.44424 4.49637 4.60650 4.88712 4.98566 4.99887 5.06328 5.11580 5.16169 5.18006 5.27775 5.29756 5.36326 5.40435 5.52959 5.63353 5.83481 6.01050 6.03882 6.12388 6.39464 6.93512 7.36239 7.43616 7.57110 7.89146 8.19091 8.25806 8.83762 8.98522 9.54169 11.00981 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.011656 B = 0.003626 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.621355 B = 7720.923149 C = 9154.418527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.217 3.783 3 C -0.050 4.050 4 C 0.116 3.884 5 N -0.596 5.596 6 C 0.245 3.755 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.063 3.937 10 N -0.895 5.895 11 Si 0.897 3.103 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.276 1.276 15 C 0.511 3.489 16 O -0.535 6.535 17 C -0.171 4.171 18 C 0.174 3.826 19 N -0.990 5.990 20 C 0.077 3.923 21 C -0.126 4.126 22 C -0.602 4.602 23 S 2.568 3.432 24 O -0.952 6.952 25 O -0.955 6.955 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.034 0.966 31 H 0.047 0.953 32 H 0.264 0.736 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.139 0.861 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.480 -6.308 -21.063 23.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.101 4.101 3 C -0.091 4.091 4 C -0.011 4.011 5 N -0.328 5.328 6 C 0.126 3.874 7 C -0.569 4.569 8 H 0.076 0.924 9 C -0.139 4.139 10 N -0.533 5.533 11 Si 0.724 3.276 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.201 1.201 15 C 0.297 3.703 16 O -0.412 6.412 17 C -0.213 4.213 18 C 0.050 3.950 19 N -0.832 5.832 20 C -0.049 4.049 21 C -0.165 4.165 22 C -0.732 4.732 23 S 2.663 3.337 24 O -0.941 6.941 25 O -0.945 6.945 26 H 0.124 0.876 27 H 0.135 0.865 28 H 0.112 0.888 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.127 0.873 41 H 0.157 0.843 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.083 -5.390 -20.571 23.124 hybrid contribution 0.173 0.338 0.160 0.412 sum -8.910 -5.052 -20.411 22.837 Atomic orbital electron populations 1.81203 1.13065 1.08685 1.09365 1.29112 0.95117 0.93069 0.92792 1.19896 0.81318 1.01714 1.06173 1.21328 0.82229 0.92954 1.04578 1.48215 1.04871 1.71424 1.08242 1.19348 0.92605 0.97639 0.77812 1.21401 1.36754 0.92459 1.06238 0.92357 1.24905 0.95264 0.97220 0.96520 1.69908 1.38282 1.29912 1.15240 0.86579 0.78420 0.84592 0.77974 1.20244 1.21230 1.20122 1.20212 0.88020 0.77187 0.84903 1.90704 1.13759 1.49555 1.87199 1.22299 1.00398 1.04869 0.93774 1.20783 0.91574 1.04883 0.77711 1.57308 1.71380 1.21502 1.33021 1.22113 0.95069 0.91725 0.96022 1.22704 0.98561 0.95303 0.99952 1.30878 1.15573 1.09879 1.16904 1.06562 0.76086 0.73982 0.77061 1.93632 1.69845 1.68572 1.62069 1.93624 1.41596 1.77915 1.81353 0.87641 0.86526 0.88777 0.90351 0.94757 0.93507 0.92641 0.88154 0.89067 0.89309 0.89168 0.90604 0.88700 0.88639 0.87311 0.84262 0.84190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.45 18.54 42.15 0.78 -5.67 16 2 C 0.22 2.56 15.43 -20.76 -0.32 2.24 16 3 C -0.05 -0.50 6.03 -29.52 -0.18 -0.68 16 4 C 0.12 1.55 5.17 -4.04 -0.02 1.53 16 5 N -0.60 -10.80 2.46 -175.06 -0.43 -11.23 16 6 C 0.24 5.76 5.16 -5.19 -0.03 5.73 16 7 C -0.53 -14.25 9.39 -34.44 -0.32 -14.57 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 11 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 C 0.51 9.15 7.67 -10.99 -0.08 9.06 16 16 O -0.54 -11.96 15.56 5.56 0.09 -11.87 16 17 C -0.17 -2.17 4.58 -27.88 -0.13 -2.29 16 18 C 0.17 2.14 5.64 -4.04 -0.02 2.12 16 19 N -0.99 -9.39 3.31 -113.19 -0.38 -9.77 16 20 C 0.08 0.41 6.83 -3.04 -0.02 0.39 16 21 C -0.13 -0.47 6.81 -24.65 -0.17 -0.63 16 22 C -0.60 -2.87 7.51 38.55 0.29 -2.58 16 23 S 2.57 26.29 6.17 -107.50 -0.66 25.63 16 24 O -0.95 -13.12 18.14 -57.41 -1.04 -14.16 16 25 O -0.96 -13.48 18.13 -57.41 -1.04 -14.52 16 26 H 0.11 0.81 7.22 -51.93 -0.37 0.43 16 27 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 29 H 0.08 0.91 6.44 -51.93 -0.33 0.58 16 30 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 31 H 0.05 1.25 7.42 -51.93 -0.39 0.87 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.10 1.30 7.40 -51.93 -0.38 0.92 16 34 H 0.09 0.83 7.18 -51.93 -0.37 0.45 16 35 H 0.09 1.27 8.10 -51.93 -0.42 0.85 16 36 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.11 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.14 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.14 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 373.25 15.07 5.62 5.62 Total: -1.00 -38.23 373.25 -8.48 -46.71 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -6.04 Total: -4.36 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -1.10 Total: 1.96 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: 0.71 Total: -51.50 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -2.00 Total: -40.55 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 26.29 SS G_CDS: -0.66 Total: 25.63 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -38.23 -8.48 -46.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195043512.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.563 kcal (2) G-P(sol) polarization free energy of solvation -38.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 16.89 seconds