Wall clock time and date at job start Tue Mar 31 2020 06:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46961 * 182.20641 * 3 2 1 5 5 N 1.46499 * 109.47055 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00123 * 270.00331 * 5 4 3 7 7 C 1.50702 * 109.46904 * 269.99929 * 6 5 4 8 8 H 1.07993 * 120.00490 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99735 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00050 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 119.99825 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47634 * 59.99423 * 11 9 7 13 13 H 1.48503 * 109.47157 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47225 * 299.99175 * 11 9 7 15 15 C 1.34779 * 119.99707 * 90.00663 * 5 4 3 16 16 O 1.21282 * 119.99922 * 180.02562 * 15 5 4 17 17 C 1.50699 * 120.00037 * 359.97438 * 15 5 4 18 18 C 1.53006 * 109.46866 * 180.02562 * 17 15 5 19 19 N 1.46500 * 109.46998 * 179.97438 * 18 17 15 20 20 C 1.47069 * 126.30253 * 274.69225 * 19 18 17 21 21 C 1.54312 * 109.97218 * 150.90232 * 20 19 18 22 22 C 1.55611 * 104.18855 * 45.50518 * 21 20 19 23 23 S 1.66999 * 126.30237 * 94.99687 * 19 18 17 24 24 O 1.42100 * 105.13628 * 298.89448 * 23 19 18 25 25 O 1.42096 * 105.13093 * 68.56859 * 23 19 18 26 26 H 1.09005 * 109.47093 * 62.21584 * 3 2 1 27 27 H 1.09001 * 109.47290 * 302.21103 * 3 2 1 28 28 H 1.09002 * 109.47160 * 60.00457 * 4 3 2 29 29 H 1.09001 * 109.47495 * 300.00336 * 4 3 2 30 30 H 1.08991 * 109.47410 * 30.00046 * 6 5 4 31 31 H 1.09007 * 109.47039 * 150.00320 * 6 5 4 32 32 H 0.97004 * 119.99848 * 180.02562 * 10 9 7 33 33 H 1.09000 * 109.47247 * 60.00371 * 17 15 5 34 34 H 1.09001 * 109.47358 * 299.99798 * 17 15 5 35 35 H 1.08993 * 109.46955 * 300.00219 * 18 17 15 36 36 H 1.09000 * 109.47050 * 60.00048 * 18 17 15 37 37 H 1.09001 * 109.35331 * 271.18457 * 20 19 18 38 38 H 1.08997 * 109.35581 * 30.82396 * 20 19 18 39 39 H 1.09005 * 110.64826 * 286.77454 * 21 20 19 40 40 H 1.09001 * 110.38801 * 164.11021 * 21 20 19 41 41 H 1.09004 * 111.16547 * 204.06066 * 22 21 20 42 42 H 1.08994 * 111.16562 * 79.79827 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1173 1.4423 0.0555 5 7 4.5822 1.4430 0.0562 6 6 5.3143 1.3946 1.3242 7 6 5.5646 2.7978 1.8136 8 1 5.2132 3.6412 1.2379 9 6 6.2423 3.0047 2.9964 10 7 6.6698 1.9777 3.6977 11 14 6.5520 4.7440 3.6033 12 1 5.2538 5.4355 3.8078 13 1 7.2941 4.6950 4.8887 14 1 7.3539 5.4843 2.5963 15 6 5.2566 1.4882 -1.1099 16 8 6.4694 1.4882 -1.1095 17 6 4.5035 1.5374 -2.4144 18 6 5.4983 1.5821 -3.5761 19 7 4.7663 1.6294 -4.8442 20 6 4.2482 0.4752 -5.5941 21 6 2.9958 0.8869 -6.3962 22 6 3.3935 2.2382 -7.0575 23 16 4.3727 3.0034 -5.7080 24 8 3.5450 3.7639 -4.8386 25 8 5.6112 3.5051 -6.1913 26 1 2.9715 -0.4782 -0.9092 27 1 2.9716 -0.5470 0.8695 28 1 2.7538 1.9213 0.9647 29 1 2.7536 1.9899 -0.8140 30 1 4.7252 0.8517 2.0633 31 1 6.2670 0.8866 1.1746 32 1 7.1462 2.1233 4.5300 33 1 3.8762 2.4285 -2.4383 34 1 3.8777 0.6498 -2.5064 35 1 6.1245 2.4695 -3.4842 36 1 6.1253 0.6908 -3.5520 37 1 5.0163 0.1146 -6.2782 38 1 3.9849 -0.3200 -4.8967 39 1 2.1421 1.0241 -5.7324 40 1 2.7710 0.1410 -7.1586 41 1 2.5127 2.8358 -7.2922 42 1 4.0052 2.0769 -7.9451 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195043512.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:49 Heat of formation + Delta-G solvation = -99.748978 kcal Electronic energy + Delta-G solvation = -26341.467421 eV Core-core repulsion = 22448.066634 eV Total energy + Delta-G solvation = -3893.400787 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.81426 -38.30315 -38.05268 -37.93029 -36.92772 -36.67374 -34.99877 -34.58742 -32.15943 -31.28666 -29.06465 -27.16382 -25.50647 -25.27222 -23.64419 -22.75827 -19.88312 -19.86666 -18.81597 -18.43395 -18.30429 -17.89366 -17.34518 -17.11042 -16.78888 -16.35278 -16.13877 -15.64617 -15.58986 -15.30618 -14.94064 -14.76966 -14.48540 -14.24148 -14.04605 -13.85409 -13.61963 -13.50254 -13.38627 -13.23008 -13.10912 -13.04158 -13.02391 -12.88170 -12.69148 -12.50529 -12.27262 -12.16788 -12.14904 -11.88456 -11.70310 -11.66830 -11.34065 -10.61399 -10.57983 -9.91598 -9.46016 -8.17998 -6.29748 -0.73008 1.39228 1.42045 1.48638 1.54051 1.70955 1.87145 1.91083 2.33571 2.46246 2.73241 3.06051 3.13050 3.21294 3.40886 3.68420 3.84002 3.96337 4.02714 4.12632 4.13097 4.15891 4.37861 4.57906 4.59593 4.63724 4.71377 4.86252 4.91948 4.97123 5.02633 5.08809 5.15389 5.16971 5.22595 5.35796 5.62161 5.67330 5.89139 6.14460 6.63410 6.74610 6.82650 7.34500 7.52234 8.88263 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.011656 B = 0.003626 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.621355 B = 7720.923149 C = 9154.418527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.246 3.754 3 C -0.036 4.036 4 C 0.111 3.889 5 N -0.598 5.598 6 C 0.260 3.740 7 C -0.544 4.544 8 H 0.049 0.951 9 C 0.014 3.986 10 N -0.923 5.923 11 Si 0.954 3.046 12 H -0.265 1.265 13 H -0.279 1.279 14 H -0.282 1.282 15 C 0.504 3.496 16 O -0.589 6.589 17 C -0.155 4.155 18 C 0.177 3.823 19 N -0.991 5.991 20 C 0.064 3.936 21 C -0.121 4.121 22 C -0.555 4.555 23 S 2.537 3.463 24 O -1.002 7.002 25 O -1.013 7.013 26 H 0.143 0.857 27 H 0.121 0.879 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.036 0.964 31 H 0.008 0.992 32 H 0.266 0.734 33 H 0.100 0.900 34 H 0.140 0.860 35 H 0.052 0.948 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.146 0.854 41 H 0.164 0.836 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.859 -7.837 -23.441 26.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.072 4.072 3 C -0.077 4.077 4 C -0.014 4.014 5 N -0.328 5.328 6 C 0.139 3.861 7 C -0.583 4.583 8 H 0.067 0.933 9 C -0.185 4.185 10 N -0.563 5.563 11 Si 0.779 3.221 12 H -0.190 1.190 13 H -0.204 1.204 14 H -0.208 1.208 15 C 0.293 3.707 16 O -0.470 6.470 17 C -0.196 4.196 18 C 0.051 3.949 19 N -0.832 5.832 20 C -0.061 4.061 21 C -0.161 4.161 22 C -0.691 4.691 23 S 2.639 3.361 24 O -0.991 6.991 25 O -1.002 7.002 26 H 0.160 0.840 27 H 0.139 0.861 28 H 0.098 0.902 29 H 0.120 0.880 30 H 0.054 0.946 31 H 0.026 0.974 32 H 0.075 0.925 33 H 0.118 0.882 34 H 0.158 0.842 35 H 0.070 0.930 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.133 0.867 39 H 0.121 0.879 40 H 0.164 0.836 41 H 0.182 0.818 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -11.490 -6.899 -22.933 26.562 hybrid contribution 0.891 0.754 0.802 1.417 sum -10.599 -6.145 -22.130 25.295 Atomic orbital electron populations 1.81247 1.14423 1.10002 1.11067 1.29160 0.94966 0.91728 0.91314 1.19827 0.80029 0.99451 1.08351 1.21521 0.79144 0.95616 1.05108 1.48101 1.06752 1.71321 1.06636 1.18805 0.91659 0.95446 0.80228 1.21753 1.36517 0.93787 1.06242 0.93275 1.25664 0.95202 1.00731 0.96908 1.70001 1.39029 1.31636 1.15640 0.85680 0.78640 0.80370 0.77396 1.18968 1.20422 1.20765 1.21141 0.87680 0.75572 0.86304 1.90677 1.16419 1.51817 1.88048 1.22258 1.00079 1.06988 0.90296 1.20527 0.91634 1.03554 0.79157 1.57070 1.71182 1.22956 1.32033 1.22525 0.96333 0.90580 0.96623 1.22900 0.97655 0.94914 1.00601 1.30639 1.14800 1.09789 1.13841 1.07164 0.75863 0.74485 0.78574 1.93564 1.70157 1.70585 1.64792 1.93551 1.44885 1.79582 1.82206 0.83960 0.86059 0.90154 0.88023 0.94568 0.97420 0.92520 0.88174 0.84248 0.92975 0.88543 0.89175 0.86736 0.87910 0.83560 0.81823 0.81628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.20 18.54 20.01 0.37 -12.83 16 2 C 0.25 5.14 15.43 89.44 1.38 6.52 16 3 C -0.04 -0.61 6.03 28.79 0.17 -0.43 16 4 C 0.11 2.78 5.17 86.38 0.45 3.23 16 5 N -0.60 -21.63 2.46 -826.15 -2.03 -23.66 16 6 C 0.26 12.60 5.16 85.63 0.44 13.04 16 7 C -0.54 -30.08 9.39 25.60 0.24 -29.84 16 8 H 0.05 2.74 7.81 -2.91 -0.02 2.71 16 9 C 0.01 0.81 5.46 84.66 0.46 1.27 16 10 N -0.92 -53.90 13.29 21.45 0.28 -53.62 16 11 Si 0.95 44.75 29.54 68.60 2.03 46.78 16 12 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 14 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 15 C 0.50 18.20 7.67 87.66 0.67 18.87 16 16 O -0.59 -27.55 15.56 -3.04 -0.05 -27.60 16 17 C -0.15 -3.69 4.58 29.85 0.14 -3.55 16 18 C 0.18 4.33 5.64 86.38 0.49 4.82 16 19 N -0.99 -17.33 3.31 -512.03 -1.70 -19.03 16 20 C 0.06 0.42 6.83 86.72 0.59 1.01 16 21 C -0.12 -0.21 6.81 31.94 0.22 0.00 16 22 C -0.55 -2.84 7.51 72.88 0.55 -2.30 16 23 S 2.54 50.77 6.17 -56.49 -0.35 50.42 16 24 O -1.00 -28.06 18.14 -127.77 -2.32 -30.38 16 25 O -1.01 -29.98 18.13 -127.77 -2.32 -32.30 16 26 H 0.14 1.47 7.22 -2.38 -0.02 1.45 16 27 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.08 2.27 8.07 -2.39 -0.02 2.25 16 29 H 0.10 2.11 6.44 -2.39 -0.02 2.09 16 30 H 0.04 1.73 8.07 -2.39 -0.02 1.71 16 31 H 0.01 0.43 7.42 -2.38 -0.02 0.41 16 32 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 33 H 0.10 2.48 7.40 -2.39 -0.02 2.46 16 34 H 0.14 1.92 7.18 -2.39 -0.02 1.90 16 35 H 0.05 1.63 8.10 -2.39 -0.02 1.61 16 36 H 0.10 2.19 8.10 -2.39 -0.02 2.17 16 37 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.10 0.14 8.14 -2.38 -0.02 0.12 16 40 H 0.15 -0.62 8.14 -2.39 -0.02 -0.64 16 41 H 0.16 0.25 8.14 -2.38 -0.02 0.23 16 42 H 0.17 0.18 8.14 -2.39 -0.02 0.16 16 Total: -1.00 -90.72 373.25 0.75 -89.97 By element: Atomic # 1 Polarization: -1.43 SS G_CDS: 1.03 Total: -0.40 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 5.80 Total: 12.63 kcal Atomic # 7 Polarization: -106.06 SS G_CDS: -3.07 Total: -109.13 kcal Atomic # 8 Polarization: -85.59 SS G_CDS: -4.68 Total: -90.27 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 50.77 SS G_CDS: -0.35 Total: 50.42 kcal Total: -90.72 0.75 -89.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195043512.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.780 kcal (2) G-P(sol) polarization free energy of solvation -90.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds