Wall clock time and date at job start Tue Mar 31 2020 05:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48498 * 109.46646 * 239.99773 * 3 2 1 5 5 H 1.48504 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47259 * 119.99535 * 3 2 1 7 7 C 1.38942 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46491 * 109.46957 * 179.72354 * 12 10 9 14 14 C 1.34839 * 119.86820 * 269.72208 * 13 12 10 15 15 O 1.21781 * 120.30399 * 0.02562 * 14 13 12 16 16 C 1.41579 * 119.38767 * 179.74264 * 14 13 12 17 17 C 1.35025 * 119.11116 * 0.52992 * 16 14 13 18 18 N 1.36836 * 119.68493 * 359.73917 * 17 16 14 19 19 C 1.46494 * 119.68752 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.47588 * 270.01893 * 19 18 17 21 21 C 1.38231 * 120.00255 * 269.73240 * 20 19 18 22 22 C 1.38234 * 120.00007 * 179.76157 * 21 20 19 23 23 C 1.38238 * 119.99885 * 0.50692 * 22 21 20 24 24 C 1.38226 * 119.99923 * 359.74692 * 23 22 21 25 25 C 1.38235 * 120.00330 * 359.97438 * 24 23 22 26 26 C 1.34546 * 120.61814 * 359.97438 * 18 17 16 27 27 O 1.21588 * 119.52895 * 180.02562 * 26 18 17 28 28 H 0.96996 * 120.00330 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 31 31 H 1.09000 * 109.47154 * 59.71645 * 12 10 9 32 32 H 1.07995 * 120.44489 * 180.24162 * 16 14 13 33 33 H 1.07998 * 120.15489 * 179.71551 * 17 16 14 34 34 H 1.08998 * 109.47064 * 30.02752 * 19 18 17 35 35 H 1.09002 * 109.46902 * 150.01881 * 19 18 17 36 36 H 1.07996 * 119.99721 * 359.97438 * 21 20 19 37 37 H 1.08000 * 120.00059 * 180.22627 * 22 21 20 38 38 H 1.07997 * 119.99892 * 179.72329 * 23 22 21 39 39 H 1.08004 * 120.00361 * 179.97438 * 24 23 22 40 40 H 1.08001 * 120.00170 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8630 -0.0047 13 7 2.1958 -5.9764 -0.0088 14 6 2.6288 -6.4853 -1.1800 15 8 2.2325 -6.0233 -2.2348 16 6 3.5531 -7.5577 -1.1722 17 6 3.9727 -8.0547 0.0111 18 7 3.5048 -7.5135 1.1776 19 6 3.9595 -8.0530 2.4614 20 6 3.0355 -9.1612 2.8963 21 6 1.9314 -8.8742 3.6770 22 6 1.0812 -9.8901 4.0718 23 6 1.3408 -11.1944 3.6947 24 6 2.4478 -11.4821 2.9185 25 6 3.2949 -10.4655 2.5188 26 6 2.6310 -6.4906 1.1564 27 8 2.2284 -6.0245 2.2048 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6165 -4.9246 0.8846 31 1 0.6178 -4.9168 -0.8953 32 1 3.9141 -7.9758 -2.1001 33 1 4.6739 -8.8756 0.0368 34 1 4.9709 -8.4446 2.3532 35 1 3.9548 -7.2611 3.2104 36 1 1.7312 -7.8558 3.9755 37 1 0.2165 -9.6653 4.6787 38 1 0.6790 -11.9887 4.0069 39 1 2.6509 -12.5012 2.6241 40 1 4.1600 -10.6903 1.9126 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195454344.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:24 Heat of formation + Delta-G solvation = -33.556836 kcal Electronic energy + Delta-G solvation = -27584.388705 eV Core-core repulsion = 23558.414273 eV Total energy + Delta-G solvation = -4025.974432 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.18593 -39.70454 -38.63034 -38.10237 -36.89249 -34.96326 -33.89025 -32.89722 -31.25692 -31.19678 -30.73123 -28.46888 -26.60221 -25.01305 -23.67326 -23.28832 -22.77044 -21.64318 -19.64782 -19.07015 -18.12878 -17.67231 -17.17322 -16.84597 -16.74243 -15.82294 -15.50562 -15.36609 -15.19684 -14.93313 -14.46443 -14.06070 -14.02318 -13.77076 -13.70718 -13.55327 -13.44360 -13.30241 -12.86162 -12.53382 -12.36438 -12.03162 -11.54232 -11.51113 -11.29914 -11.19353 -10.99187 -10.65723 -10.42181 -10.21166 -9.98188 -9.75439 -9.50158 -9.21746 -9.16730 -8.54455 -8.34680 -7.97034 -6.39879 -3.80863 0.87430 1.09566 1.12152 2.08791 2.25688 3.11797 3.22153 3.27749 3.32948 3.53980 3.69681 3.86994 4.20345 4.30016 4.37030 4.38675 4.69528 4.71066 4.85478 4.90689 5.00184 5.14861 5.21709 5.28070 5.30122 5.38743 5.53422 5.64234 5.68920 5.76639 5.77072 5.86295 6.10857 6.12556 6.22981 6.25794 6.27940 6.51030 6.68484 7.42075 7.56818 7.79895 8.02720 8.16807 8.59613 9.17259 9.51560 10.01718 10.77544 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.019372 B = 0.002973 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.042704 B = 9414.768715 C =10068.502442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.024 3.976 3 Si 0.933 3.067 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.553 5.553 10 C 0.434 3.566 11 O -0.589 6.589 12 C 0.098 3.902 13 N -0.527 5.527 14 C 0.550 3.450 15 O -0.513 6.513 16 C -0.288 4.288 17 C 0.167 3.833 18 N -0.532 5.532 19 C 0.153 3.847 20 C -0.118 4.118 21 C -0.088 4.088 22 C -0.123 4.123 23 C -0.112 4.112 24 C -0.126 4.126 25 C -0.103 4.103 26 C 0.702 3.298 27 O -0.534 6.534 28 H 0.273 0.727 29 H 0.394 0.606 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.168 0.832 33 H 0.173 0.827 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.133 0.867 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.430 -24.884 6.236 26.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.189 5.189 10 C 0.219 3.781 11 O -0.474 6.474 12 C -0.027 4.027 13 N -0.269 5.269 14 C 0.346 3.654 15 O -0.388 6.388 16 C -0.316 4.316 17 C 0.044 3.956 18 N -0.252 5.252 19 C 0.032 3.968 20 C -0.119 4.119 21 C -0.107 4.107 22 C -0.141 4.141 23 C -0.130 4.130 24 C -0.144 4.144 25 C -0.121 4.121 26 C 0.405 3.595 27 O -0.407 6.407 28 H 0.083 0.917 29 H 0.228 0.772 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.186 0.814 33 H 0.190 0.810 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.151 0.849 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.614 -24.109 6.348 25.354 hybrid contribution -0.161 0.785 -0.081 0.806 sum 4.453 -23.323 6.267 24.558 Atomic orbital electron populations 1.69605 1.05928 1.28380 1.50063 1.25276 0.95665 0.99737 0.97105 0.85891 0.78770 0.80312 0.79085 1.19847 1.20880 1.19873 1.19646 0.93338 0.82049 1.47833 0.87984 1.41726 1.09261 1.04326 1.63560 1.19804 0.88465 0.84842 0.85020 1.90516 1.13686 1.86945 1.56280 1.21466 0.90914 0.84730 1.05616 1.45871 1.42653 1.32238 1.06184 1.17293 0.81679 0.83384 0.83090 1.90872 1.57187 1.61191 1.29551 1.21897 1.07372 1.03356 0.98941 1.22202 0.93916 0.95010 0.84515 1.44821 1.41430 1.31205 1.07709 1.20734 0.96457 0.95747 0.83884 1.20057 0.97633 0.94263 0.99959 1.21335 0.93269 1.00158 0.95936 1.21237 0.99636 0.92891 1.00332 1.21239 0.97319 0.96734 0.97752 1.21119 0.95294 0.99164 0.98837 1.21043 0.99574 0.92142 0.99374 1.15757 0.79605 0.79565 0.84564 1.90973 1.58614 1.61048 1.30063 0.91712 0.77227 0.87061 0.86812 0.81421 0.81024 0.87797 0.87042 0.84895 0.85803 0.86046 0.85930 0.85933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.10 13.05 55.50 0.72 -24.38 16 2 C 0.02 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 21.69 29.55 -169.99 -5.02 16.67 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.30 -8.72 9.68 -14.93 -0.14 -8.86 16 8 H 0.10 3.11 7.16 -52.49 -0.38 2.74 16 9 N -0.55 -14.89 5.29 -10.96 -0.06 -14.95 16 10 C 0.43 11.20 7.85 -10.98 -0.09 11.12 16 11 O -0.59 -17.20 16.01 5.55 0.09 -17.11 16 12 C 0.10 2.00 5.58 -5.20 -0.03 1.97 16 13 N -0.53 -10.04 2.05 -125.33 -0.26 -10.30 16 14 C 0.55 10.09 7.44 -14.96 -0.11 9.98 16 15 O -0.51 -11.14 16.69 5.12 0.09 -11.05 16 16 C -0.29 -3.63 10.00 -39.45 -0.39 -4.02 16 17 C 0.17 1.58 10.38 -16.46 -0.17 1.41 16 18 N -0.53 -6.47 2.59 -122.83 -0.32 -6.79 16 19 C 0.15 1.38 5.46 -5.20 -0.03 1.35 16 20 C -0.12 -1.07 5.46 -104.63 -0.57 -1.64 16 21 C -0.09 -0.92 9.70 -39.59 -0.38 -1.30 16 22 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 23 C -0.11 -0.86 10.05 -39.59 -0.40 -1.26 16 24 C -0.13 -0.89 10.05 -39.59 -0.40 -1.29 16 25 C -0.10 -0.74 9.70 -39.58 -0.38 -1.12 16 26 C 0.70 12.10 8.11 -87.29 -0.71 11.39 16 27 O -0.53 -10.29 14.83 5.29 0.08 -10.21 16 28 H 0.27 7.19 8.31 -40.82 -0.34 6.86 16 29 H 0.39 10.04 7.90 -40.82 -0.32 9.72 16 30 H 0.11 2.06 7.39 -51.93 -0.38 1.67 16 31 H 0.11 2.16 7.42 -51.93 -0.39 1.77 16 32 H 0.17 1.65 8.06 -52.49 -0.42 1.22 16 33 H 0.17 0.68 8.06 -52.49 -0.42 0.25 16 34 H 0.10 0.54 7.97 -51.93 -0.41 0.13 16 35 H 0.11 1.17 7.31 -51.93 -0.38 0.79 16 36 H 0.13 1.55 7.53 -52.49 -0.40 1.15 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 39 H 0.12 0.60 8.06 -52.48 -0.42 0.18 16 40 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 355.73 15.07 5.36 5.36 Total: -1.00 -38.45 355.73 -7.95 -46.40 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -4.33 Total: 9.57 kcal Atomic # 6 Polarization: 21.10 SS G_CDS: -4.30 Total: 16.80 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.09 Total: -56.42 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: 0.25 Total: -38.38 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -38.45 -7.95 -46.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195454344.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.847 kcal (2) G-P(sol) polarization free energy of solvation -38.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds