Wall clock time and date at job start Tue Mar 31 2020 05:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86801 * 119.99811 * 2 1 4 4 H 1.48503 * 109.47271 * 240.00193 * 3 2 1 5 5 H 1.48498 * 109.47118 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47310 * 120.00000 * 3 2 1 7 7 C 1.40047 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99789 * 179.97438 * 7 2 1 9 9 C 1.46374 * 120.00118 * 0.02562 * 7 2 1 10 10 O 1.21688 * 119.99992 * 359.97438 * 9 7 2 11 11 N 1.34775 * 119.99768 * 180.02562 * 9 7 2 12 12 C 1.46509 * 119.99335 * 179.97438 * 11 9 7 13 13 C 1.52999 * 109.46747 * 180.02562 * 12 11 9 14 14 C 1.50699 * 109.47109 * 179.97438 * 13 12 11 15 15 C 1.38276 * 119.92917 * 90.00123 * 14 13 12 16 16 C 1.38166 * 120.09411 * 179.97438 * 15 14 13 17 17 C 1.38693 * 119.97212 * 359.97438 * 16 15 14 18 18 O 1.35933 * 120.06977 * 180.02562 * 17 16 15 19 19 C 1.35886 * 117.99734 * 6.21634 * 18 17 16 20 20 C 1.38760 * 120.05724 * 67.64687 * 19 18 17 21 21 C 1.38133 * 119.93943 * 179.97438 * 20 19 18 22 22 C 1.38273 * 120.05967 * 359.97438 * 21 20 19 23 23 C 1.38278 * 120.11641 * 0.26974 * 22 21 20 24 24 C 1.38134 * 120.05570 * 359.49254 * 23 22 21 25 25 C 1.38937 * 119.86364 * 0.27722 * 17 16 15 26 26 F 1.35103 * 120.04645 * 179.72409 * 25 17 16 27 27 C 1.38254 * 119.93686 * 269.98043 * 14 13 12 28 28 H 0.96993 * 120.00058 * 0.02562 * 1 2 3 29 29 H 0.96993 * 120.00323 * 359.97438 * 11 9 7 30 30 H 1.08995 * 109.47065 * 60.00011 * 12 11 9 31 31 H 1.08998 * 109.47176 * 300.00034 * 12 11 9 32 32 H 1.09004 * 109.47091 * 60.00198 * 13 12 11 33 33 H 1.09004 * 109.46963 * 300.00196 * 13 12 11 34 34 H 1.07999 * 119.95286 * 359.96002 * 15 14 13 35 35 H 1.08003 * 120.01452 * 179.97438 * 16 15 14 36 36 H 1.07996 * 120.03100 * 359.95397 * 20 19 18 37 37 H 1.08000 * 119.97389 * 179.97438 * 21 20 19 38 38 H 1.07995 * 119.94651 * 179.97438 * 22 21 20 39 39 H 1.08002 * 119.96930 * 179.72966 * 23 22 21 40 40 H 1.08006 * 120.02948 * 180.24981 * 24 23 22 41 41 H 1.07998 * 119.98624 * 0.03932 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6965 -1.2125 5 1 1.2757 2.7464 -0.0006 6 1 3.0944 1.6965 1.2124 7 6 2.0070 -1.2128 0.0005 8 1 3.0871 -1.2127 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4806 0.0005 11 7 1.9492 -3.6476 0.0016 12 6 1.2166 -4.9164 0.0022 13 6 2.2109 -6.0793 0.0040 14 6 1.4575 -7.3844 0.0052 15 6 1.1131 -7.9833 -1.1926 16 6 0.4228 -9.1802 -1.1955 17 6 0.0750 -9.7823 0.0045 18 8 -0.6037 -10.9601 0.0040 19 6 -0.8088 -11.5776 -1.1889 20 6 0.2646 -12.1069 -1.8912 21 6 0.0532 -12.7346 -3.1033 22 6 -1.2267 -12.8362 -3.6168 23 6 -2.2974 -12.3051 -2.9214 24 6 -2.0921 -11.6808 -1.7065 25 6 0.4172 -9.1766 1.2072 26 9 0.0754 -9.7572 2.3783 27 6 1.1124 -7.9807 1.2038 28 1 -0.4850 0.8400 -0.0004 29 1 2.9191 -3.6476 0.0020 30 1 0.5904 -4.9747 -0.8880 31 1 0.5896 -4.9735 0.8919 32 1 2.8369 -6.0207 0.8944 33 1 2.8383 -6.0223 -0.8856 34 1 1.3839 -7.5148 -2.1272 35 1 0.1541 -9.6466 -2.1318 36 1 1.2643 -12.0279 -1.4905 37 1 0.8882 -13.1464 -3.6506 38 1 -1.3898 -13.3269 -4.5649 39 1 -3.2955 -12.3820 -3.3268 40 1 -2.9293 -11.2697 -1.1618 41 1 1.3823 -7.5107 2.1379 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195567530.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:14 Heat of formation + Delta-G solvation = -67.116139 kcal Electronic energy + Delta-G solvation = -25869.835949 eV Core-core repulsion = 21822.486315 eV Total energy + Delta-G solvation = -4047.349634 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 7.08 seconds Orbital eigenvalues (eV) -48.88088 -41.17181 -39.16184 -37.93214 -37.16287 -34.18957 -32.46834 -31.61753 -31.40069 -30.96529 -30.22735 -27.96135 -26.06568 -24.00760 -23.33323 -22.85427 -22.33485 -21.06355 -19.68641 -19.05606 -17.63171 -17.19859 -16.87572 -16.69317 -16.46197 -15.61165 -15.50825 -15.32138 -14.77473 -14.57306 -14.50500 -14.27885 -14.12508 -13.91678 -13.71354 -13.53261 -13.05765 -12.84845 -12.56940 -12.22173 -12.08785 -12.00038 -11.81677 -11.48268 -11.37940 -11.11184 -11.06387 -10.94115 -10.61964 -10.44187 -10.24481 -9.45505 -9.21684 -9.04413 -8.84112 -8.27440 -7.61408 -7.51150 -6.17855 -4.63765 0.64877 0.87663 0.99133 1.05885 2.70599 3.16055 3.20870 3.22747 3.33754 3.39652 4.02339 4.10976 4.44821 4.46613 4.50022 4.59257 4.60172 4.66674 4.82109 4.92064 5.03842 5.06970 5.10672 5.16191 5.36908 5.48367 5.52908 5.55540 5.73659 5.79795 5.84495 5.89502 5.93174 5.96705 6.01435 6.03326 6.28090 6.29756 6.56356 6.60558 6.62315 7.22737 7.43661 7.93001 8.08962 8.32563 9.02782 9.53764 10.60857 10.79304 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.021028 B = 0.002037 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.231234 B =13744.187626 C =14250.904541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.554 3.446 10 O -0.581 6.581 11 N -0.769 5.769 12 C 0.138 3.862 13 C -0.090 4.090 14 C -0.069 4.069 15 C -0.085 4.085 16 C -0.164 4.164 17 C 0.078 3.922 18 O -0.253 6.253 19 C 0.087 3.913 20 C -0.139 4.139 21 C -0.104 4.104 22 C -0.122 4.122 23 C -0.103 4.103 24 C -0.121 4.121 25 C 0.079 3.921 26 F -0.133 7.133 27 C -0.113 4.113 28 H 0.269 0.731 29 H 0.380 0.620 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.999 -25.367 -5.669 26.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.358 3.642 10 O -0.464 6.464 11 N -0.425 5.425 12 C 0.013 3.987 13 C -0.127 4.127 14 C -0.070 4.070 15 C -0.104 4.104 16 C -0.183 4.183 17 C 0.035 3.965 18 O -0.165 6.165 19 C 0.045 3.955 20 C -0.157 4.157 21 C -0.122 4.122 22 C -0.140 4.140 23 C -0.121 4.121 24 C -0.139 4.139 25 C 0.060 3.940 26 F -0.111 7.111 27 C -0.132 4.132 28 H 0.080 0.920 29 H 0.211 0.789 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.806 -25.368 -5.446 25.958 hybrid contribution 0.838 0.609 0.109 1.042 sum 1.644 -24.759 -5.336 25.381 Atomic orbital electron populations 1.70011 1.07062 1.27370 1.35273 1.25717 0.94624 1.00301 0.92653 0.86430 0.79800 0.81052 0.79418 1.19301 1.20584 1.19286 1.20850 0.93537 0.89408 1.54529 0.91458 1.18219 0.87215 0.82437 0.76356 1.90604 1.14124 1.86853 1.54782 1.46148 1.08541 1.04885 1.82967 1.20826 0.93616 0.83179 1.01060 1.20841 0.97767 0.90554 1.03587 1.19664 0.98894 0.96552 0.91885 1.20985 0.96908 0.93999 0.98459 1.21177 1.02939 0.97827 0.96365 1.19052 0.97265 0.86697 0.93519 1.84406 1.71031 1.32521 1.28546 1.18735 0.93671 0.96958 0.86124 1.21518 0.99081 0.99424 0.95718 1.21071 0.97511 0.98515 0.95130 1.21284 0.92659 0.99759 1.00320 1.21096 0.99628 0.97375 0.94014 1.21246 0.96343 1.00642 0.95665 1.16900 1.03545 0.94533 0.79067 1.91504 1.90615 1.83878 1.45126 1.20973 0.98817 0.93297 1.00106 0.92049 0.78853 0.93217 0.93220 0.90301 0.90218 0.84632 0.84509 0.85146 0.85215 0.85413 0.85020 0.84837 0.83602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.20 11.83 55.55 0.66 -22.54 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 3 Si 0.91 20.09 29.56 -169.99 -5.02 15.07 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.55 -15.39 9.54 -35.63 -0.34 -15.73 16 8 H 0.07 1.72 7.85 -52.48 -0.41 1.31 16 9 C 0.55 15.79 7.75 -12.99 -0.10 15.69 16 10 O -0.58 -19.03 15.02 5.20 0.08 -18.95 16 11 N -0.77 -16.85 5.55 -61.72 -0.34 -17.19 16 12 C 0.14 2.58 5.66 -4.04 -0.02 2.55 16 13 C -0.09 -1.17 5.45 -27.88 -0.15 -1.32 16 14 C -0.07 -0.86 5.13 -104.60 -0.54 -1.40 16 15 C -0.09 -0.98 9.69 -39.59 -0.38 -1.36 16 16 C -0.16 -1.88 8.80 -39.44 -0.35 -2.22 16 17 C 0.08 1.00 6.55 -39.15 -0.26 0.75 16 18 O -0.25 -3.27 9.86 -3.68 -0.04 -3.30 16 19 C 0.09 0.92 4.71 -39.20 -0.18 0.73 16 20 C -0.14 -1.22 8.39 -39.43 -0.33 -1.55 16 21 C -0.10 -0.72 10.04 -39.61 -0.40 -1.12 16 22 C -0.12 -0.78 10.04 -39.55 -0.40 -1.18 16 23 C -0.10 -0.73 10.04 -39.60 -0.40 -1.13 16 24 C -0.12 -1.10 9.99 -39.43 -0.39 -1.49 16 25 C 0.08 1.07 7.31 -39.29 -0.29 0.79 16 26 F -0.13 -1.91 17.11 2.25 0.04 -1.87 16 27 C -0.11 -1.43 9.67 -39.54 -0.38 -1.81 16 28 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 29 H 0.38 7.11 8.45 -40.82 -0.35 6.77 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.08 0.93 8.08 -51.93 -0.42 0.52 16 33 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 34 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.14 1.38 6.21 -52.48 -0.33 1.05 16 36 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 37 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 38 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 39 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 40 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 41 H 0.15 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 364.18 15.07 5.49 5.49 Total: -1.00 -35.82 364.18 -9.01 -44.84 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -4.86 Total: 5.94 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -5.01 Total: -7.48 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.31 Total: -39.73 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: 0.04 Total: -22.25 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.82 -9.01 -44.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195567530.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.281 kcal (2) G-P(sol) polarization free energy of solvation -35.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.08 seconds