Wall clock time and date at job start Tue Mar 31 2020 05:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.41666 * 119.99931 * 2 1 4 4 C 1.34973 * 120.00112 * 180.02562 * 3 2 1 5 5 C 1.47168 * 120.00161 * 179.97438 * 4 3 2 6 6 C 1.39858 * 120.16986 * 179.97438 * 5 4 3 7 7 C 1.37878 * 119.82204 * 179.97438 * 6 5 4 8 8 C 1.38405 * 120.17467 * 359.97438 * 7 6 5 9 9 C 1.38402 * 120.34865 * 359.97438 * 8 7 6 10 10 C 1.37886 * 120.17250 * 0.02562 * 9 8 7 11 11 N 1.30380 * 120.00257 * 180.02562 * 2 1 3 12 12 N 1.40095 * 119.99486 * 359.97438 * 11 2 1 13 13 C 1.38301 * 119.99853 * 180.02562 * 12 11 2 14 14 N 1.31344 * 126.40923 * 0.02562 * 13 12 11 15 15 N 1.28515 * 110.03640 * 179.97438 * 14 13 12 16 16 C 1.31339 * 109.99930 * 0.02562 * 15 14 13 17 17 S 1.76204 * 126.43585 * 180.02562 * 16 15 14 18 18 C 1.76197 * 99.99812 * 359.97065 * 17 16 15 19 19 H 1.08002 * 120.00423 * 0.02562 * 18 17 16 20 20 C 1.38488 * 119.99972 * 179.97438 * 18 17 16 21 21 N 1.31753 * 120.00091 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00272 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46821 * 60.00464 * 22 20 18 24 24 H 1.48500 * 109.47465 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47000 * 300.00650 * 22 20 18 26 26 N 1.36952 * 126.41212 * 179.71643 * 13 12 11 27 27 H 0.97001 * 127.17377 * 0.04336 * 26 13 12 28 28 H 1.08997 * 109.47132 * 89.99839 * 1 2 3 29 29 H 1.08998 * 109.47378 * 209.99868 * 1 2 3 30 30 H 1.08998 * 109.47404 * 330.00034 * 1 2 3 31 31 H 1.07997 * 120.00393 * 359.97438 * 3 2 1 32 32 H 1.08007 * 119.99508 * 359.97438 * 4 3 2 33 33 H 1.08000 * 120.08639 * 359.95461 * 6 5 4 34 34 H 1.07997 * 119.91692 * 180.02562 * 7 6 5 35 35 H 1.07999 * 119.82948 * 179.72310 * 8 7 6 36 36 H 1.08006 * 119.91747 * 179.97438 * 9 8 7 37 37 H 1.08005 * 120.08922 * 180.02562 * 10 9 8 38 38 H 0.97005 * 120.00560 * 0.02562 * 12 11 2 39 39 H 0.96999 * 120.00604 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2153 1.2269 0.0000 4 6 3.5650 1.2269 -0.0005 5 6 4.3008 2.5014 -0.0011 6 6 5.6994 2.5056 -0.0011 7 6 6.3815 3.7038 -0.0022 8 6 5.6859 4.9003 -0.0038 9 6 4.3019 4.9046 -0.0049 10 6 3.6052 3.7146 -0.0038 11 7 2.1589 -1.1291 -0.0005 12 7 1.4584 -2.3423 -0.0005 13 6 2.1498 -3.5401 -0.0005 14 7 3.4551 -3.6867 0.0000 15 7 3.7578 -4.9357 0.0003 16 6 2.6642 -5.6630 -0.0004 17 16 2.5778 -7.4229 0.0004 18 6 4.2959 -7.8135 0.0014 19 1 5.0299 -7.0212 0.0018 20 6 4.7053 -9.1365 0.0028 21 7 3.8099 -10.1031 0.0028 22 14 6.5267 -9.5507 0.0046 23 1 7.1635 -8.9770 1.2173 24 1 6.6990 -11.0257 0.0053 25 1 7.1657 -8.9787 -1.2078 26 7 1.6018 -4.7951 0.0049 27 1 0.6590 -5.0230 0.0090 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6753 2.1622 -0.0004 32 1 4.1050 0.2915 -0.0005 33 1 6.2436 1.5727 0.0001 34 1 7.4615 3.7088 -0.0026 35 1 6.2258 5.8356 -0.0001 36 1 3.7661 5.8423 -0.0057 37 1 2.5252 3.7195 -0.0051 38 1 0.4883 -2.3424 -0.0005 39 1 4.0965 -11.0298 0.0033 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245254038.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:07 Heat of formation + Delta-G solvation = 162.766327 kcal Electronic energy + Delta-G solvation = -22800.576487 eV Core-core repulsion = 19258.160888 eV Total energy + Delta-G solvation = -3542.415599 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.101 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -41.89126 -39.46564 -38.28576 -35.10857 -33.17843 -32.63607 -32.42530 -31.22229 -29.59918 -29.04908 -27.66273 -25.59548 -24.21290 -22.83471 -22.51251 -21.52426 -20.62095 -19.12293 -18.92467 -17.70479 -17.27736 -16.36737 -15.93056 -15.52896 -15.47563 -14.99816 -14.88762 -14.77489 -14.39268 -14.37027 -13.62939 -13.58051 -13.18188 -13.01144 -12.55155 -12.47294 -12.14788 -11.41144 -11.40033 -11.15774 -11.11026 -11.07371 -10.97789 -10.59796 -10.34942 -10.17889 -10.16480 -9.89732 -9.84250 -9.25156 -9.20775 -8.81709 -8.52798 -7.68524 -6.55155 -6.42697 -4.16292 0.32382 1.16837 1.58092 1.92541 2.49385 2.76937 2.90979 3.26637 3.26913 3.33710 3.69231 3.72756 3.91831 4.06565 4.28831 4.52657 4.67508 4.69595 4.72189 4.80932 4.93824 5.00932 5.09946 5.13646 5.15239 5.18749 5.26219 5.52134 5.66816 5.73597 5.81849 5.98320 6.02364 6.11045 6.20646 6.25402 6.34044 6.51939 6.58240 6.73200 6.91212 7.61541 7.69928 8.02476 8.41470 9.09493 9.56409 10.65560 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.015933 B = 0.002102 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.893533 B =13315.951181 C =15057.698729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.084 3.916 3 C -0.111 4.111 4 C -0.064 4.064 5 C -0.060 4.060 6 C -0.100 4.100 7 C -0.121 4.121 8 C -0.120 4.120 9 C -0.123 4.123 10 C -0.111 4.111 11 N -0.186 5.186 12 N -0.544 5.544 13 C 0.409 3.591 14 N -0.297 5.297 15 N -0.292 5.292 16 C 0.171 3.829 17 S 0.131 5.869 18 C -0.527 4.527 19 H 0.105 0.895 20 C 0.074 3.926 21 N -0.881 5.881 22 Si 0.934 3.066 23 H -0.269 1.269 24 H -0.283 1.283 25 H -0.269 1.269 26 N -0.604 5.604 27 H 0.421 0.579 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.132 0.868 32 H 0.139 0.861 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.392 0.608 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.151 26.500 -0.040 27.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 C -0.131 4.131 4 C -0.089 4.089 5 C -0.060 4.060 6 C -0.119 4.119 7 C -0.139 4.139 8 C -0.138 4.138 9 C -0.141 4.141 10 C -0.129 4.129 11 N 0.004 4.996 12 N -0.277 5.277 13 C 0.048 3.952 14 N -0.143 5.143 15 N -0.137 5.137 16 C -0.202 4.202 17 S 0.361 5.639 18 C -0.676 4.676 19 H 0.123 0.877 20 C -0.135 4.135 21 N -0.516 5.516 22 Si 0.759 3.241 23 H -0.194 1.194 24 H -0.209 1.209 25 H -0.194 1.194 26 N -0.230 5.230 27 H 0.259 0.741 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.150 0.850 32 H 0.157 0.843 33 H 0.147 0.853 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.233 0.767 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.528 25.333 -0.036 25.929 hybrid contribution -1.249 0.345 0.016 1.296 sum -6.777 25.678 -0.019 26.558 Atomic orbital electron populations 1.21182 0.92479 1.03589 1.03292 1.22012 0.94113 0.91992 1.02202 1.20479 0.94125 0.94346 1.04105 1.22530 0.94466 0.96620 0.95308 1.19118 0.93433 0.92923 1.00502 1.21478 0.93396 0.98630 0.98366 1.21127 1.00099 0.92419 1.00269 1.21261 0.94442 0.98086 1.00031 1.21068 0.94400 0.97929 1.00715 1.21392 0.99917 0.91822 0.99784 1.75198 1.23417 0.89865 1.11132 1.43349 1.05395 0.98740 1.80208 1.20184 0.89560 0.78924 1.06504 1.74456 1.06193 1.11557 1.22089 1.74691 1.21807 0.95384 1.21780 1.28135 0.84119 1.02337 1.05644 1.83464 1.13998 0.78924 1.87479 1.23104 0.90439 0.95716 1.58362 0.87675 1.25047 1.00073 0.94749 0.93624 1.69989 1.34064 1.00334 1.47259 0.85959 0.81685 0.76939 0.79522 1.19446 1.20885 1.19447 1.43752 1.10263 1.04174 1.64773 0.74062 0.90126 0.91912 0.89818 0.85041 0.84348 0.85296 0.85863 0.86192 0.86043 0.85651 0.76704 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.50 36.00 0.34 -0.66 16 2 C 0.08 0.88 6.91 -81.90 -0.57 0.32 16 3 C -0.11 -1.02 9.09 -39.43 -0.36 -1.38 16 4 C -0.06 -0.69 9.40 -37.12 -0.35 -1.04 16 5 C -0.06 -0.59 5.87 -105.06 -0.62 -1.20 16 6 C -0.10 -0.97 9.80 -39.11 -0.38 -1.35 16 7 C -0.12 -1.01 10.03 -39.65 -0.40 -1.41 16 8 C -0.12 -0.90 10.04 -39.46 -0.40 -1.30 16 9 C -0.12 -0.91 10.03 -39.65 -0.40 -1.31 16 10 C -0.11 -0.90 9.41 -39.11 -0.37 -1.27 16 11 N -0.19 -2.70 10.22 33.96 0.35 -2.36 16 12 N -0.54 -7.90 6.27 30.37 0.19 -7.71 16 13 C 0.41 7.76 9.20 -318.42 -2.93 4.83 16 14 N -0.30 -6.93 12.11 30.38 0.37 -6.56 16 15 N -0.29 -7.45 11.02 30.81 0.34 -7.11 16 16 C 0.17 3.94 8.37 -87.69 -0.73 3.20 16 17 S 0.13 3.23 21.89 -107.50 -2.35 0.87 16 18 C -0.53 -14.82 9.36 30.82 0.29 -14.53 16 19 H 0.11 3.05 6.92 -52.49 -0.36 2.69 16 20 C 0.07 2.02 5.49 -17.49 -0.10 1.92 16 21 N -0.88 -24.64 13.22 55.47 0.73 -23.91 16 22 Si 0.93 21.50 29.55 -169.99 -5.02 16.48 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 N -0.60 -10.85 6.35 -12.94 -0.08 -10.94 16 27 H 0.42 5.63 8.96 -40.82 -0.37 5.26 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.42 6.36 -51.93 -0.33 0.09 16 30 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 31 H 0.13 0.82 6.08 -52.49 -0.32 0.50 16 32 H 0.14 1.78 7.34 -52.48 -0.39 1.40 16 33 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 35 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 36 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 37 H 0.13 0.75 6.17 -52.48 -0.32 0.42 16 38 H 0.39 4.16 6.57 -182.60 -1.20 2.96 16 39 H 0.27 7.16 8.32 -40.82 -0.34 6.82 16 LS Contribution 359.63 15.07 5.42 5.42 Total: -1.00 -34.69 359.63 -11.98 -46.67 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -4.96 Total: 4.32 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -6.96 Total: -15.18 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: 1.90 Total: -58.59 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -2.35 Total: 0.87 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.69 -11.98 -46.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245254038.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.438 kcal (2) G-P(sol) polarization free energy of solvation -34.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds