Wall clock time and date at job start Tue Mar 31 2020 05:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48491 * 109.47482 * 239.99946 * 3 2 1 5 5 H 1.48500 * 109.47001 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46765 * 120.00128 * 3 2 1 7 7 C 1.37881 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.07988 * 120.00291 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99336 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46693 * 179.97438 * 9 7 2 11 11 C 1.34650 * 125.25304 * 125.00126 * 10 9 7 12 12 C 1.36751 * 108.04700 * 180.02562 * 11 10 9 13 13 C 1.47430 * 126.68798 * 179.97438 * 12 11 10 14 14 N 1.29779 * 120.00156 * 354.71164 * 13 12 11 15 15 N 1.40094 * 120.00066 * 184.99798 * 14 13 12 16 16 C 1.34773 * 119.99901 * 174.98893 * 15 14 13 17 17 N 1.34781 * 120.00336 * 5.02088 * 16 15 14 18 18 S 1.71201 * 120.00244 * 185.01424 * 16 15 14 19 19 C 1.46472 * 106.62774 * 0.22610 * 12 11 10 20 20 C 1.48268 * 126.49775 * 179.75723 * 19 12 11 21 21 C 1.39397 * 120.11918 * 318.52830 * 20 19 12 22 22 C 1.38014 * 119.86638 * 179.72466 * 21 20 19 23 23 C 1.38332 * 120.12400 * 0.57253 * 22 21 20 24 24 C 1.38321 * 120.25737 * 359.70432 * 23 22 21 25 25 C 1.38012 * 120.12654 * 359.97438 * 24 23 22 26 26 N 1.31532 * 107.01009 * 359.61645 * 19 12 11 27 27 H 0.97001 * 119.99601 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47032 * 59.99920 * 9 7 2 29 29 H 1.08995 * 109.46831 * 299.99888 * 9 7 2 30 30 H 1.08001 * 125.97758 * 0.03481 * 11 10 9 31 31 H 1.08006 * 120.00328 * 174.42676 * 13 12 11 32 32 H 0.97004 * 120.00098 * 355.00085 * 15 14 13 33 33 H 0.97003 * 119.99553 * 5.00203 * 17 16 15 34 34 H 0.96995 * 119.99997 * 185.00454 * 17 16 15 35 35 H 1.08002 * 120.06741 * 0.02562 * 21 20 19 36 36 H 1.07995 * 119.93338 * 180.29768 * 22 21 20 37 37 H 1.08001 * 119.86744 * 179.72335 * 23 22 21 38 38 H 1.08002 * 119.94021 * 180.02562 * 24 23 22 39 39 H 1.08007 * 120.06202 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2029 -3.6127 -0.0027 11 6 2.2286 -4.6141 0.8971 12 6 3.2542 -5.4556 0.5653 13 6 3.6499 -6.6850 1.2763 14 7 3.0657 -7.0075 2.3894 15 7 3.5118 -8.1174 3.1186 16 6 2.9730 -8.3933 4.3228 17 7 1.9367 -7.6632 4.7807 18 16 3.6046 -9.6714 5.2707 19 6 3.8868 -4.8942 -0.6305 20 6 5.0500 -5.4554 -1.3588 21 6 6.1317 -5.9784 -0.6521 22 6 7.2093 -6.5047 -1.3353 23 6 7.2223 -6.5030 -2.7185 24 6 6.1542 -5.9801 -3.4249 25 6 5.0683 -5.4572 -2.7525 26 7 3.2255 -3.7995 -0.9377 27 1 -0.4849 0.8401 0.0004 28 1 0.6246 -2.5562 -0.8919 29 1 0.6240 -2.5574 0.8880 30 1 1.5566 -4.7321 1.7343 31 1 4.4228 -7.3197 0.8685 32 1 4.2086 -8.6872 2.7570 33 1 1.5319 -6.9875 4.2147 34 1 1.5959 -7.8135 5.6763 35 1 6.1245 -5.9763 0.4279 36 1 8.0458 -6.9145 -0.7888 37 1 8.0696 -6.9118 -3.2489 38 1 6.1695 -5.9817 -4.5049 39 1 4.2347 -5.0495 -3.3051 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254698908.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:43 Heat of formation + Delta-G solvation = 145.374581 kcal Electronic energy + Delta-G solvation = -23803.789086 eV Core-core repulsion = 20260.619325 eV Total energy + Delta-G solvation = -3543.169762 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.101 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.76010 -39.00945 -38.90325 -35.87196 -34.09586 -32.70261 -32.46181 -31.02012 -30.40168 -29.47766 -27.25817 -24.61027 -23.96386 -22.91395 -22.44972 -21.74159 -20.40654 -19.85340 -19.08225 -17.83894 -17.03578 -16.81070 -16.31326 -16.19637 -15.57363 -15.21357 -15.06636 -14.80043 -14.58811 -14.31525 -13.92056 -13.48278 -13.33281 -13.10447 -12.63295 -12.54700 -12.28336 -11.89993 -11.51186 -11.34753 -11.24496 -11.15682 -11.00634 -10.58196 -10.47597 -10.37234 -10.06056 -9.84003 -9.35852 -9.02204 -8.80426 -8.55815 -8.16735 -7.90166 -7.66744 -6.43797 -4.50579 0.75452 1.08561 1.32664 1.49772 1.71623 2.43580 2.51790 3.02427 3.13566 3.14125 3.18552 3.22730 3.24761 3.79883 4.15223 4.36581 4.56375 4.79027 4.87469 4.92330 4.93350 5.04685 5.07327 5.33994 5.43508 5.49366 5.76651 5.81785 5.94078 5.96782 6.07875 6.24617 6.40842 6.42367 6.43544 6.55818 6.70870 6.84185 6.89815 7.04614 7.36738 7.58294 7.61247 7.67237 8.09879 8.55966 9.16751 10.65013 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.007383 B = 0.003603 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3791.465282 B = 7770.485447 C =10963.842227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.066 3.934 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.070 0.930 9 C 0.251 3.749 10 N -0.315 5.315 11 C 0.120 3.880 12 C -0.245 4.245 13 C 0.227 3.773 14 N -0.329 5.329 15 N -0.535 5.535 16 C 0.613 3.387 17 N -0.786 5.786 18 S -0.656 6.656 19 C 0.115 3.885 20 C -0.001 4.001 21 C -0.103 4.103 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.120 4.120 25 C -0.090 4.090 26 N -0.248 5.248 27 H 0.270 0.730 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.179 0.821 31 H 0.121 0.879 32 H 0.412 0.588 33 H 0.411 0.589 34 H 0.429 0.571 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.249 -12.039 -1.814 14.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.736 3.264 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.575 4.575 8 H 0.088 0.912 9 C 0.135 3.865 10 N -0.091 5.091 11 C -0.035 4.035 12 C -0.261 4.261 13 C 0.019 3.981 14 N -0.138 5.138 15 N -0.257 5.257 16 C 0.249 3.751 17 N -0.329 5.329 18 S -0.532 6.532 19 C -0.055 4.055 20 C -0.002 4.002 21 C -0.123 4.123 22 C -0.139 4.139 23 C -0.137 4.137 24 C -0.138 4.138 25 C -0.109 4.109 26 N -0.068 5.068 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.196 0.804 31 H 0.139 0.861 32 H 0.256 0.744 33 H 0.244 0.756 34 H 0.263 0.737 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.439 -11.261 -1.415 13.049 hybrid contribution 0.603 0.675 -0.420 0.998 sum 7.043 -10.586 -1.835 12.846 Atomic orbital electron populations 1.69889 1.06084 1.28105 1.48870 1.24925 0.94999 0.99644 0.94178 0.86361 0.79429 0.81545 0.79104 1.19758 1.20891 1.19920 1.21137 0.93970 0.89094 1.53329 0.91184 1.19960 0.85577 0.81136 0.99864 1.49455 1.23027 1.19195 1.17424 1.22723 0.97780 0.88216 0.94803 1.18988 1.05156 0.99621 1.02368 1.23580 0.92663 0.92684 0.89187 1.74708 1.24361 1.04183 1.10536 1.46181 1.37675 1.25839 1.16030 1.21887 0.82644 0.87523 0.83004 1.42873 1.31085 1.38449 1.20480 1.93770 1.73599 1.28435 1.57374 1.21792 0.96036 0.93680 0.93944 1.17768 0.91492 0.98570 0.92416 1.21168 0.92935 0.98303 0.99862 1.21044 0.98175 1.00243 0.94452 1.21209 0.98439 0.99718 0.94329 1.21102 0.93764 0.98891 1.00024 1.21298 0.98699 0.97820 0.93113 1.77589 1.00258 1.15785 1.13186 0.92009 0.93050 0.92206 0.80377 0.86148 0.74434 0.75614 0.73659 0.85875 0.85810 0.86102 0.85801 0.85356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.52 13.29 55.43 0.74 -22.79 16 2 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 20.09 29.54 -169.99 -5.02 15.07 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.54 -13.61 9.21 -34.44 -0.32 -13.92 16 8 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 9 C 0.25 5.59 6.22 -5.19 -0.03 5.56 16 10 N -0.31 -6.07 3.64 -62.24 -0.23 -6.30 16 11 C 0.12 1.85 11.11 -16.85 -0.19 1.66 16 12 C -0.25 -3.44 6.23 -103.38 -0.64 -4.09 16 13 C 0.23 2.48 10.11 -14.68 -0.15 2.33 16 14 N -0.33 -3.58 10.13 32.15 0.33 -3.26 16 15 N -0.54 -5.62 6.26 29.96 0.19 -5.43 16 16 C 0.61 7.13 8.13 -86.92 -0.71 6.42 16 17 N -0.79 -6.86 8.82 29.96 0.26 -6.59 16 18 S -0.66 -10.16 30.88 -107.50 -3.32 -13.48 16 19 C 0.11 1.81 6.88 -80.56 -0.55 1.26 16 20 C 0.00 -0.01 5.80 -104.92 -0.61 -0.62 16 21 C -0.10 -1.13 8.65 -39.23 -0.34 -1.46 16 22 C -0.12 -1.12 10.03 -39.63 -0.40 -1.52 16 23 C -0.12 -1.07 10.04 -39.52 -0.40 -1.47 16 24 C -0.12 -1.20 10.03 -39.63 -0.40 -1.60 16 25 C -0.09 -1.12 9.78 -39.24 -0.38 -1.50 16 26 N -0.25 -4.82 12.33 34.57 0.43 -4.40 16 27 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 28 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.06 1.30 8.05 -51.93 -0.42 0.88 16 30 H 0.18 2.24 8.06 -52.49 -0.42 1.81 16 31 H 0.12 1.04 6.92 -52.48 -0.36 0.68 16 32 H 0.41 3.81 8.64 -182.60 -1.58 2.23 16 33 H 0.41 3.22 7.91 -40.82 -0.32 2.89 16 34 H 0.43 3.06 8.81 -40.82 -0.36 2.70 16 35 H 0.12 1.21 7.19 -52.49 -0.38 0.83 16 36 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 37 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 365.96 15.07 5.51 5.51 Total: -1.00 -30.92 365.96 -11.82 -42.75 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -5.50 Total: 6.25 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -5.21 Total: -7.34 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: 1.71 Total: -48.76 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: -10.16 SS G_CDS: -3.32 Total: -13.48 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.92 -11.82 -42.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254698908.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.120 kcal (2) G-P(sol) polarization free energy of solvation -30.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds