Wall clock time and date at job start Tue Mar 31 2020 07:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34775 * 119.99937 * 2 1 4 4 O 1.21691 * 120.00251 * 5.11242 * 3 2 1 5 5 C 1.46677 * 119.99915 * 185.11948 * 3 2 1 6 6 C 1.37878 * 126.23228 * 354.28400 * 5 3 2 7 7 C 1.39837 * 107.08492 * 180.02562 * 6 5 3 8 8 S 1.76195 * 126.06721 * 179.97438 * 7 6 5 9 9 O 1.42099 * 106.40464 * 336.48636 * 8 7 6 10 10 O 1.42102 * 106.40497 * 203.56412 * 8 7 6 11 11 N 1.65602 * 107.21563 * 90.02617 * 8 7 6 12 12 C 1.46504 * 119.99709 * 269.99862 * 11 8 7 13 13 C 1.46502 * 120.00428 * 89.99919 * 11 8 7 14 14 H 1.09005 * 109.46462 * 0.02562 * 13 11 8 15 15 C 1.52991 * 109.47325 * 239.99967 * 13 11 8 16 16 C 1.50698 * 109.46946 * 119.99524 * 13 11 8 17 17 H 1.07997 * 120.00505 * 0.02562 * 16 13 11 18 18 C 1.37878 * 119.99837 * 179.97438 * 16 13 11 19 19 N 1.31519 * 119.99799 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 120.00211 * 180.02562 * 18 16 13 21 21 H 1.48494 * 109.47107 * 270.00616 * 20 18 16 22 22 H 1.48500 * 109.46805 * 30.00301 * 20 18 16 23 23 H 1.48501 * 109.47112 * 150.00419 * 20 18 16 24 24 C 1.35454 * 107.86669 * 0.22600 * 7 6 5 25 25 N 1.35539 * 108.86874 * 359.62817 * 24 7 6 26 26 C 1.46497 * 125.67622 * 180.11198 * 25 24 7 27 27 H 1.08997 * 109.47267 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47580 * 300.00569 * 1 2 3 29 29 H 1.09006 * 109.46890 * 60.00795 * 1 2 3 30 30 H 0.97001 * 120.00022 * 179.97438 * 2 1 3 31 31 H 1.07999 * 126.45389 * 359.97438 * 6 5 3 32 32 H 1.09006 * 109.47266 * 270.00022 * 12 11 8 33 33 H 1.08996 * 109.47194 * 30.00408 * 12 11 8 34 34 H 1.09005 * 109.47030 * 150.00078 * 12 11 8 35 35 H 1.09002 * 109.47414 * 179.97438 * 15 13 11 36 36 H 1.08995 * 109.47270 * 300.00261 * 15 13 11 37 37 H 1.09009 * 109.47083 * 59.99797 * 15 13 11 38 38 H 0.97007 * 119.99536 * 179.97438 * 19 18 16 39 39 H 1.07999 * 125.56815 * 179.77305 * 24 7 6 40 40 H 1.08998 * 109.47679 * 274.22199 * 26 25 24 41 41 H 1.09003 * 109.47264 * 34.22688 * 26 25 24 42 42 H 1.09004 * 109.47368 * 154.22300 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5341 2.2190 0.0939 5 6 3.6012 1.1697 -0.1134 6 6 4.4204 0.0607 -0.1154 7 6 5.7347 0.5209 -0.2420 8 16 7.1836 -0.4802 -0.2978 9 8 6.8503 -1.7044 0.3420 10 8 8.2599 0.3478 0.1208 11 7 7.4659 -0.8455 -1.8882 12 6 6.8753 -2.0489 -2.4793 13 6 8.3062 0.0346 -2.7040 14 1 8.6531 0.8709 -2.0969 15 6 7.4925 0.5647 -3.8862 16 6 9.4932 -0.7389 -3.2177 17 1 9.6098 -1.7817 -2.9624 18 6 10.4299 -0.1153 -4.0145 19 7 10.2877 1.1545 -4.3258 20 14 11.9009 -1.0742 -4.6519 21 1 13.0196 -0.9674 -3.6813 22 1 11.5262 -2.5012 -4.8203 23 1 12.3261 -0.5161 -5.9607 24 6 5.6969 1.8733 -0.3085 25 7 4.4059 2.2797 -0.2365 26 6 3.9442 3.6695 -0.2768 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.9500 -0.8401 0.0004 31 1 4.1061 -0.9694 -0.0336 32 1 7.5592 -2.8884 -2.3543 33 1 5.9313 -2.2720 -1.9823 34 1 6.6959 -1.8814 -3.5414 35 1 8.1176 1.2199 -4.4929 36 1 7.1460 -0.2717 -4.4930 37 1 6.6339 1.1242 -3.5145 38 1 10.9469 1.5933 -4.8861 39 1 6.5551 2.5218 -0.4055 40 1 3.9751 4.0920 0.7275 41 1 4.5920 4.2487 -0.9348 42 1 2.9217 3.7019 -0.6532 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264114758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:48 Heat of formation + Delta-G solvation = -52.943573 kcal Electronic energy + Delta-G solvation = -26936.937757 eV Core-core repulsion = 23045.566604 eV Total energy + Delta-G solvation = -3891.371153 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 13.42 seconds Orbital eigenvalues (eV) -41.56221 -39.23483 -36.53496 -36.10929 -35.10796 -35.03919 -33.02881 -32.54935 -30.13833 -29.05718 -26.88735 -26.76972 -25.53951 -25.10689 -22.72925 -21.45563 -20.57033 -20.09638 -18.71994 -17.74983 -16.76698 -16.52709 -16.19563 -15.92644 -15.87383 -15.35987 -15.10450 -14.92699 -14.47197 -14.19013 -13.69274 -13.47514 -13.18880 -13.11183 -12.80763 -12.70281 -12.62751 -12.51969 -12.45208 -11.93166 -11.65718 -11.40054 -11.30983 -11.16973 -10.93869 -10.81940 -10.75982 -10.42650 -10.26080 -10.23364 -9.96644 -9.51676 -9.25013 -9.18524 -8.50082 -8.43381 -7.90690 -6.05815 -4.11704 1.14560 1.27879 2.09058 2.40587 3.11833 3.15671 3.30963 3.37378 3.40427 3.89217 4.40910 4.44565 4.51608 4.61652 4.83252 4.92172 5.04307 5.08128 5.17281 5.26003 5.31431 5.38027 5.42295 5.45572 5.67254 5.87603 6.03452 6.20406 6.40929 6.42880 6.64649 6.66910 6.79909 6.83297 6.95843 7.04283 7.15087 7.48550 7.66219 7.81175 7.88475 8.05867 8.29825 8.90762 9.53944 10.99913 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.019653 B = 0.003529 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.341848 B = 7933.118241 C = 8222.435294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.726 5.726 3 C 0.595 3.405 4 O -0.550 6.550 5 C -0.069 4.069 6 C -0.049 4.049 7 C -0.746 4.746 8 S 2.710 3.290 9 O -0.978 6.978 10 O -0.959 6.959 11 N -0.982 5.982 12 C 0.110 3.890 13 C 0.268 3.732 14 H 0.061 0.939 15 C -0.149 4.149 16 C -0.517 4.517 17 H 0.063 0.937 18 C 0.063 3.937 19 N -0.892 5.892 20 Si 0.898 3.102 21 H -0.279 1.279 22 H -0.274 1.274 23 H -0.287 1.287 24 C 0.146 3.854 25 N -0.404 5.404 26 C 0.060 3.940 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.407 0.593 31 H 0.156 0.844 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.034 0.966 37 H 0.009 0.991 38 H 0.262 0.738 39 H 0.190 0.810 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.947 0.081 5.867 17.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.377 5.377 3 C 0.383 3.617 4 O -0.429 6.429 5 C -0.181 4.181 6 C -0.075 4.075 7 C -0.836 4.836 8 S 2.798 3.202 9 O -0.968 6.968 10 O -0.950 6.950 11 N -0.822 5.822 12 C -0.036 4.036 13 C 0.165 3.835 14 H 0.078 0.922 15 C -0.208 4.208 16 C -0.557 4.557 17 H 0.082 0.918 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.726 3.274 21 H -0.205 1.205 22 H -0.199 1.199 23 H -0.213 1.213 24 C 0.003 3.997 25 N -0.075 5.075 26 C -0.081 4.081 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.242 0.758 31 H 0.173 0.827 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.053 0.947 37 H 0.028 0.972 38 H 0.072 0.928 39 H 0.207 0.793 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.077 1.095 6.514 18.310 hybrid contribution 0.446 -0.420 -0.769 0.984 sum -16.631 0.676 5.744 17.608 Atomic orbital electron populations 1.21563 0.78643 1.02589 1.02457 1.45430 1.07923 1.08357 1.76006 1.16912 0.84947 0.83997 0.75833 1.90770 1.70114 1.31119 1.50921 1.20039 0.91236 0.87109 1.19676 1.20930 0.90318 0.97373 0.98921 1.31565 1.18716 1.07120 1.26210 1.01345 0.72772 0.73111 0.72995 1.93486 1.85452 1.43546 1.74295 1.93555 1.50971 1.69813 1.80630 1.57409 1.61726 1.33382 1.29670 1.21156 0.95992 0.86817 0.99676 1.18747 0.87207 0.88880 0.88692 0.92180 1.22125 0.97863 1.00219 1.00617 1.21346 1.06192 0.97543 1.30623 0.91838 1.24900 0.97992 0.94990 0.96005 1.69860 1.35708 1.09942 1.37541 0.86502 0.82769 0.80063 0.78101 1.20550 1.19859 1.21276 1.21968 0.86433 0.94446 0.96815 1.44150 1.05786 1.06812 1.50777 1.22414 1.03468 0.78171 1.04035 0.90213 0.92010 0.92070 0.75825 0.82659 0.93144 0.93162 0.91053 0.88915 0.94731 0.97163 0.92765 0.79281 0.90143 0.89240 0.87628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 10.71 59.85 0.64 1.27 16 2 N -0.73 -6.63 5.70 -68.42 -0.39 -7.02 16 3 C 0.59 7.59 7.77 -12.85 -0.10 7.49 16 4 O -0.55 -8.19 14.67 5.20 0.08 -8.12 16 5 C -0.07 -0.95 6.88 -81.98 -0.56 -1.51 16 6 C -0.05 -0.68 10.15 -39.12 -0.40 -1.08 16 7 C -0.75 -12.02 6.18 -39.98 -0.25 -12.27 16 8 S 2.71 52.42 5.79 -107.50 -0.62 51.80 16 9 O -0.98 -19.68 16.94 -57.17 -0.97 -20.65 16 10 O -0.96 -21.56 16.41 -57.17 -0.94 -22.50 16 11 N -0.98 -19.92 3.06 -115.85 -0.35 -20.27 16 12 C 0.11 1.90 9.53 59.85 0.57 2.47 16 13 C 0.27 6.36 2.62 -69.09 -0.18 6.18 16 14 H 0.06 1.56 6.91 -51.93 -0.36 1.20 16 15 C -0.15 -3.30 8.95 37.15 0.33 -2.97 16 16 C -0.52 -13.66 8.37 -34.44 -0.29 -13.94 16 17 H 0.06 1.67 7.65 -52.49 -0.40 1.27 16 18 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 19 N -0.89 -24.32 11.32 55.43 0.63 -23.69 16 20 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.15 2.16 11.12 -16.91 -0.19 1.97 16 25 N -0.40 -5.46 3.16 -120.23 -0.38 -5.84 16 26 C 0.06 0.62 10.64 59.85 0.64 1.25 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.41 2.82 7.73 -40.82 -0.32 2.50 16 31 H 0.16 1.71 7.45 -52.49 -0.39 1.32 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.71 7.79 -51.93 -0.40 0.31 16 34 H 0.07 1.20 6.43 -51.93 -0.33 0.86 16 35 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 36 H 0.03 0.72 6.66 -51.93 -0.35 0.38 16 37 H 0.01 0.19 8.14 -51.92 -0.42 -0.23 16 38 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 39 H 0.19 2.47 8.06 -52.49 -0.42 2.05 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.11 1.17 6.23 -51.93 -0.32 0.85 16 LS Contribution 362.40 15.07 5.46 5.46 Total: -1.00 -34.65 362.40 -8.10 -42.75 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.71 Total: 1.80 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 0.12 Total: -9.54 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -0.50 Total: -56.83 kcal Atomic # 8 Polarization: -49.44 SS G_CDS: -1.83 Total: -51.27 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 52.42 SS G_CDS: -0.62 Total: 51.80 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.65 -8.10 -42.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264114758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.194 kcal (2) G-P(sol) polarization free energy of solvation -34.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.42 seconds