Wall clock time and date at job start Tue Mar 31 2020 07:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34770 * 119.99999 * 2 1 4 4 O 1.21690 * 120.00458 * 5.12280 * 3 2 1 5 5 C 1.46680 * 119.99628 * 185.12503 * 3 2 1 6 6 C 1.37874 * 126.23901 * 354.28011 * 5 3 2 7 7 C 1.39830 * 107.08839 * 179.97438 * 6 5 3 8 8 S 1.76199 * 126.06507 * 179.97438 * 7 6 5 9 9 O 1.42098 * 106.40226 * 336.48156 * 8 7 6 10 10 O 1.42106 * 106.40115 * 203.56657 * 8 7 6 11 11 N 1.65601 * 107.22045 * 90.02368 * 8 7 6 12 12 C 1.46501 * 120.00102 * 269.99904 * 11 8 7 13 13 C 1.46503 * 119.99597 * 90.00019 * 11 8 7 14 14 H 1.08994 * 109.47561 * 359.97438 * 13 11 8 15 15 C 1.53003 * 109.46774 * 120.00328 * 13 11 8 16 16 C 1.50707 * 109.46591 * 239.99688 * 13 11 8 17 17 H 1.07998 * 120.00207 * 0.02562 * 16 13 11 18 18 C 1.37874 * 119.99643 * 179.97438 * 16 13 11 19 19 N 1.31515 * 120.00173 * 0.02562 * 18 16 13 20 20 Si 1.86804 * 120.00018 * 180.02562 * 18 16 13 21 21 H 1.48504 * 109.46734 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47052 * 120.00376 * 20 18 16 23 23 H 1.48504 * 109.47239 * 240.00610 * 20 18 16 24 24 C 1.35446 * 107.86739 * 0.22958 * 7 6 5 25 25 N 1.35541 * 108.86928 * 359.62684 * 24 7 6 26 26 C 1.46508 * 125.67657 * 180.12559 * 25 24 7 27 27 H 1.08999 * 109.47490 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47150 * 300.00014 * 1 2 3 29 29 H 1.09006 * 109.47175 * 60.00214 * 1 2 3 30 30 H 0.97007 * 119.99245 * 180.02562 * 2 1 3 31 31 H 1.08008 * 126.45051 * 359.96808 * 6 5 3 32 32 H 1.08999 * 109.46911 * 270.00208 * 12 11 8 33 33 H 1.09003 * 109.46750 * 29.99991 * 12 11 8 34 34 H 1.08998 * 109.46844 * 149.99762 * 12 11 8 35 35 H 1.08992 * 109.46895 * 299.99212 * 15 13 11 36 36 H 1.09003 * 109.46702 * 179.97438 * 15 13 11 37 37 H 1.08997 * 109.47212 * 59.99915 * 15 13 11 38 38 H 0.96999 * 119.99982 * 179.97438 * 19 18 16 39 39 H 1.08004 * 125.56746 * 179.77475 * 24 7 6 40 40 H 1.08995 * 109.46898 * 274.20552 * 26 25 24 41 41 H 1.08995 * 109.46677 * 34.20670 * 26 25 24 42 42 H 1.08996 * 109.46696 * 154.21073 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 1.5341 2.2189 0.0941 5 6 3.6012 1.1696 -0.1135 6 6 4.4204 0.0606 -0.1156 7 6 5.7346 0.5208 -0.2435 8 16 7.1834 -0.4804 -0.3000 9 8 6.8506 -1.7042 0.3410 10 8 8.2601 0.3478 0.1175 11 7 7.4645 -0.8468 -1.8903 12 6 6.8734 -2.0504 -2.4803 13 6 8.3043 0.0329 -2.7071 14 1 8.6509 0.8699 -2.1012 15 6 9.5090 -0.7528 -3.2292 16 6 7.5018 0.5544 -3.8713 17 1 6.4695 0.2603 -3.9905 18 6 8.0853 1.4077 -4.7836 19 7 9.3423 1.7662 -4.6382 20 14 7.0905 2.0547 -6.2263 21 1 5.7121 1.5060 -6.1627 22 1 7.0360 3.5374 -6.1647 23 1 7.7325 1.6353 -7.4981 24 6 5.6967 1.8730 -0.3106 25 7 4.4058 2.2796 -0.2378 26 6 3.9440 3.6694 -0.2787 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.9499 -0.8402 -0.0004 31 1 4.1062 -0.9695 -0.0337 32 1 7.5574 -2.8898 -2.3552 33 1 5.9298 -2.2733 -1.9823 34 1 6.6933 -1.8836 -3.5423 35 1 10.0893 -1.1299 -2.3873 36 1 10.1335 -0.0984 -3.8374 37 1 9.1620 -1.5896 -3.8354 38 1 9.7529 2.3662 -5.2803 39 1 6.5549 2.5215 -0.4087 40 1 3.9756 4.0923 0.7253 41 1 4.5915 4.2480 -0.9374 42 1 2.9213 3.7014 -0.6544 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264114762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:10 Heat of formation + Delta-G solvation = -55.120607 kcal Electronic energy + Delta-G solvation = -27172.711015 eV Core-core repulsion = 23281.245459 eV Total energy + Delta-G solvation = -3891.465556 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 3.80 seconds Orbital eigenvalues (eV) -41.43718 -39.13857 -36.55296 -36.09953 -35.13849 -34.95453 -32.90969 -32.59625 -30.02661 -29.06095 -26.78509 -26.67021 -25.46090 -25.17472 -22.62934 -21.32497 -20.64080 -20.00872 -18.65265 -17.68816 -16.74531 -16.40490 -16.30708 -15.82966 -15.78898 -15.25207 -15.15581 -14.83245 -14.52069 -14.08885 -13.61098 -13.42710 -13.15515 -13.09328 -12.69836 -12.60615 -12.55051 -12.40864 -12.34452 -11.93572 -11.72251 -11.44909 -11.32669 -11.19016 -10.95633 -10.88097 -10.75252 -10.39907 -10.21467 -10.17220 -10.04404 -9.43668 -9.29021 -9.05329 -8.50006 -8.36750 -7.90483 -6.11148 -4.18887 1.18666 1.40036 2.22347 2.51730 3.20549 3.22540 3.25454 3.29938 3.32721 3.87888 4.33895 4.49819 4.54950 4.71917 4.95500 4.99122 5.15730 5.17937 5.19488 5.23668 5.38164 5.49666 5.50935 5.54433 5.70477 5.96830 6.11700 6.22610 6.37241 6.55478 6.70246 6.77451 6.89714 6.91721 7.09045 7.13221 7.23903 7.50292 7.63374 7.78500 7.97648 8.05373 8.26047 8.85211 9.47376 10.93728 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.011327 B = 0.004910 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.329162 B = 5701.229892 C = 6816.730737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.726 5.726 3 C 0.595 3.405 4 O -0.550 6.550 5 C -0.070 4.070 6 C -0.049 4.049 7 C -0.742 4.742 8 S 2.712 3.288 9 O -0.980 6.980 10 O -0.967 6.967 11 N -0.982 5.982 12 C 0.107 3.893 13 C 0.266 3.734 14 H 0.061 0.939 15 C -0.144 4.144 16 C -0.523 4.523 17 H 0.063 0.937 18 C 0.065 3.935 19 N -0.886 5.886 20 Si 0.892 3.108 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.283 1.283 24 C 0.156 3.844 25 N -0.404 5.404 26 C 0.061 3.939 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.407 0.593 31 H 0.154 0.846 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.014 0.986 36 H 0.092 0.908 37 H 0.032 0.968 38 H 0.263 0.737 39 H 0.190 0.810 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.556 -2.651 7.287 14.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.378 5.378 3 C 0.384 3.616 4 O -0.430 6.430 5 C -0.181 4.181 6 C -0.076 4.076 7 C -0.833 4.833 8 S 2.801 3.199 9 O -0.970 6.970 10 O -0.957 6.957 11 N -0.822 5.822 12 C -0.040 4.040 13 C 0.164 3.836 14 H 0.078 0.922 15 C -0.204 4.204 16 C -0.563 4.563 17 H 0.081 0.919 18 C -0.137 4.137 19 N -0.525 5.525 20 Si 0.720 3.280 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.209 1.209 24 C 0.013 3.987 25 N -0.075 5.075 26 C -0.080 4.080 27 H 0.097 0.903 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.241 0.759 31 H 0.172 0.828 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.033 0.967 36 H 0.111 0.889 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.207 0.793 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.624 -1.673 7.951 15.013 hybrid contribution -0.895 0.447 -1.305 1.645 sum -13.520 -1.226 6.646 15.115 Atomic orbital electron populations 1.21552 0.78738 1.02507 1.02420 1.45422 1.07861 1.08369 1.76119 1.16920 0.85000 0.83954 0.75753 1.90765 1.70146 1.31121 1.50960 1.19996 0.91159 0.87151 1.19842 1.20886 0.90370 0.97254 0.99049 1.31342 1.18386 1.07073 1.26492 1.01165 0.72903 0.72946 0.72859 1.93486 1.85509 1.43703 1.74338 1.93535 1.51458 1.69846 1.80884 1.57413 1.62022 1.33390 1.29328 1.21197 0.96125 0.85991 1.00650 1.18754 0.87260 0.87441 0.90183 0.92178 1.22051 0.99158 0.99965 0.99252 1.21447 0.97982 1.27778 1.09067 0.91866 1.24896 0.94919 0.96151 0.97781 1.69888 1.11417 1.34642 1.36535 0.86547 0.80268 0.78617 0.82572 1.19908 1.21098 1.20909 1.21938 0.86405 0.94433 0.95921 1.44123 1.05809 1.06765 1.50839 1.22399 1.03482 0.78272 1.03873 0.90276 0.92055 0.92109 0.75864 0.82805 0.93745 0.93039 0.90276 0.96720 0.88919 0.94849 0.92727 0.79300 0.90257 0.89215 0.87702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 10.71 59.85 0.64 1.35 16 2 N -0.73 -7.35 5.70 -68.42 -0.39 -7.74 16 3 C 0.60 8.28 7.77 -12.86 -0.10 8.18 16 4 O -0.55 -8.82 14.67 5.20 0.08 -8.74 16 5 C -0.07 -1.05 6.88 -81.98 -0.56 -1.62 16 6 C -0.05 -0.74 10.15 -39.12 -0.40 -1.14 16 7 C -0.74 -12.75 6.18 -39.98 -0.25 -13.00 16 8 S 2.71 52.40 5.78 -107.50 -0.62 51.77 16 9 O -0.98 -19.42 16.94 -57.17 -0.97 -20.39 16 10 O -0.97 -21.17 16.41 -57.17 -0.94 -22.11 16 11 N -0.98 -19.84 3.06 -115.85 -0.35 -20.19 16 12 C 0.11 1.84 9.28 59.85 0.56 2.40 16 13 C 0.27 6.29 2.62 -69.08 -0.18 6.11 16 14 H 0.06 1.55 6.91 -51.93 -0.36 1.19 16 15 C -0.14 -3.35 8.97 37.16 0.33 -3.02 16 16 C -0.52 -13.07 7.99 -34.44 -0.28 -13.35 16 17 H 0.06 1.57 7.33 -52.49 -0.38 1.18 16 18 C 0.07 1.67 5.30 -17.82 -0.09 1.57 16 19 N -0.89 -23.70 11.32 55.43 0.63 -23.08 16 20 Si 0.89 20.13 29.54 -169.99 -5.02 15.10 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 C 0.16 2.54 11.12 -16.91 -0.19 2.35 16 25 N -0.40 -6.07 3.16 -120.23 -0.38 -6.45 16 26 C 0.06 0.72 10.64 59.85 0.64 1.35 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.41 3.19 7.73 -40.82 -0.32 2.88 16 31 H 0.15 1.83 7.45 -52.48 -0.39 1.44 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.75 7.79 -51.93 -0.40 0.35 16 34 H 0.08 1.39 7.02 -51.93 -0.36 1.03 16 35 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 37 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 38 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 39 H 0.19 2.79 8.06 -52.48 -0.42 2.37 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.10 1.33 6.23 -51.93 -0.32 1.00 16 LS Contribution 363.09 15.07 5.47 5.47 Total: -1.00 -33.49 363.09 -8.15 -41.65 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.77 Total: 3.50 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 0.12 Total: -8.80 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.50 Total: -57.46 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -1.83 Total: -51.24 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: 52.40 SS G_CDS: -0.62 Total: 51.77 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.49 -8.15 -41.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264114762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.475 kcal (2) G-P(sol) polarization free energy of solvation -33.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.80 seconds