Wall clock time and date at job start Tue Mar 31 2020 05:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00170 * 2 1 4 4 H 1.48498 * 109.47401 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47260 * 300.00261 * 3 2 1 6 6 H 1.48510 * 109.46870 * 60.00095 * 3 2 1 7 7 C 1.38805 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99977 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99845 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99736 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46775 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46939 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47270 * 180.02562 * 12 11 10 14 14 C 1.46952 * 111.00062 * 169.99760 * 13 12 11 15 15 C 1.53054 * 109.36339 * 183.18604 * 14 13 12 16 16 N 1.46955 * 109.36442 * 301.60011 * 15 14 13 17 17 C 1.38275 * 111.00005 * 183.18715 * 16 15 14 18 18 N 1.31631 * 127.43979 * 180.02562 * 17 16 15 19 19 C 1.31705 * 116.76714 * 179.97438 * 18 17 16 20 20 N 1.39421 * 121.16947 * 179.97438 * 19 18 17 21 21 N 1.30629 * 117.65620 * 359.97438 * 19 18 17 22 22 S 1.69933 * 105.78937 * 0.02562 * 21 19 18 23 23 C 1.46960 * 110.88095 * 59.32324 * 16 15 14 24 24 C 1.46955 * 110.99712 * 293.79765 * 13 12 11 25 25 H 0.97003 * 119.99942 * 359.97438 * 1 2 3 26 26 H 1.08991 * 109.47368 * 59.99672 * 10 9 7 27 27 H 1.09003 * 109.46792 * 299.99386 * 10 9 7 28 28 H 1.09005 * 109.47340 * 59.99848 * 11 10 9 29 29 H 1.08998 * 109.47588 * 299.99448 * 11 10 9 30 30 H 1.08998 * 109.47508 * 59.99883 * 12 11 10 31 31 H 1.09004 * 109.47291 * 299.99997 * 12 11 10 32 32 H 1.09005 * 109.48892 * 63.22458 * 14 13 12 33 33 H 1.09001 * 109.49403 * 303.15401 * 14 13 12 34 34 H 1.09004 * 109.48974 * 181.63570 * 15 14 13 35 35 H 1.08995 * 109.50906 * 61.58105 * 15 14 13 36 36 H 0.96998 * 120.00492 * 359.97438 * 20 19 18 37 37 H 0.97004 * 120.00156 * 179.97438 * 20 19 18 38 38 H 1.08996 * 109.48889 * 60.64572 * 23 16 15 39 39 H 1.08997 * 109.48598 * 180.71078 * 23 16 15 40 40 H 1.08993 * 109.49347 * 296.77411 * 24 13 12 41 41 H 1.09004 * 109.49104 * 56.84717 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9792 -5.3243 0.0012 12 6 3.1512 -6.3078 0.0005 13 7 2.6361 -7.6835 0.0005 14 6 3.7166 -8.6504 -0.2384 15 6 3.1281 -10.0615 -0.3099 16 7 2.4255 -10.3607 0.9457 17 6 1.9406 -11.6556 0.9457 18 7 1.2650 -12.2571 1.9020 19 6 0.9028 -13.5035 1.6787 20 7 0.1846 -14.2276 2.6293 21 7 1.2402 -14.0373 0.5352 22 16 2.0893 -12.8296 -0.3063 23 6 1.3450 -9.3937 1.1845 24 6 1.9335 -7.9827 1.2561 25 1 -0.4850 0.8401 0.0004 26 1 3.1244 -3.7314 0.8904 27 1 3.1243 -3.7314 -0.8895 28 1 1.3702 -5.4846 -0.8886 29 1 1.3709 -5.4841 0.8914 30 1 3.7605 -6.1476 0.8900 31 1 3.7592 -6.1479 -0.8899 32 1 4.4381 -8.5983 0.5770 33 1 4.2134 -8.4154 -1.1797 34 1 3.9313 -10.7834 -0.4581 35 1 2.4270 -10.1217 -1.1422 36 1 -0.0567 -13.8145 3.4730 37 1 -0.0738 -15.1446 2.4469 38 1 0.6235 -9.4459 0.3692 39 1 0.8482 -9.6288 2.1258 40 1 2.6347 -7.9230 2.0884 41 1 1.1303 -7.2608 1.4043 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268329629.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:51 Heat of formation + Delta-G solvation = 72.261134 kcal Electronic energy + Delta-G solvation = -22491.107433 eV Core-core repulsion = 19080.211186 eV Total energy + Delta-G solvation = -3410.896247 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 329.104 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.83716 -39.71637 -36.79639 -34.12221 -32.79609 -32.42983 -31.51221 -31.32425 -28.13656 -25.70933 -24.80530 -24.44905 -23.54738 -21.04558 -20.68477 -20.30989 -19.37225 -17.82384 -17.45246 -16.56397 -16.17326 -15.97389 -15.61784 -15.43423 -15.19711 -14.89190 -14.82055 -14.70249 -14.12837 -13.86194 -13.03219 -12.84509 -12.42672 -12.26812 -12.14655 -11.86192 -11.71819 -11.67795 -11.50614 -11.25841 -11.18618 -11.08857 -10.79347 -10.64098 -10.59654 -10.33578 -9.99817 -9.55725 -9.30983 -9.08036 -8.55805 -8.39893 -8.31497 -6.54312 -6.24401 -3.94549 0.24449 0.76648 1.39063 2.34845 2.54871 3.19784 3.20236 3.28699 3.45379 3.46114 3.72897 4.21013 4.23683 4.52276 4.56467 4.76766 4.80889 4.92912 5.03966 5.11745 5.18864 5.26316 5.29789 5.32189 5.44934 5.47309 5.59580 5.63164 5.67031 5.86511 5.92549 6.00213 6.11446 6.29255 6.53081 6.60835 6.68029 6.80257 6.83124 6.88445 7.59486 7.71162 8.35407 9.22184 10.83802 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.036322 B = 0.001827 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.701445 B =15323.151125 C =15770.095845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.070 3.930 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.516 4.516 8 H 0.073 0.927 9 S -0.132 6.132 10 C -0.113 4.113 11 C -0.094 4.094 12 C 0.061 3.939 13 N -0.541 5.541 14 C 0.059 3.941 15 C 0.044 3.956 16 N -0.432 5.432 17 C 0.299 3.701 18 N -0.570 5.570 19 C 0.537 3.463 20 N -0.819 5.819 21 N -0.554 5.554 22 S 0.194 5.806 23 C 0.067 3.933 24 C 0.050 3.950 25 H 0.267 0.733 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.037 0.963 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.415 0.585 37 H 0.416 0.584 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.049 0.951 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.940 -26.266 1.926 26.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.664 4.664 8 H 0.091 0.909 9 S 0.096 5.904 10 C -0.262 4.262 11 C -0.133 4.133 12 C -0.067 4.067 13 N -0.266 5.266 14 C -0.070 4.070 15 C -0.083 4.083 16 N -0.152 5.152 17 C -0.081 4.081 18 N -0.304 5.304 19 C 0.160 3.840 20 N -0.375 5.375 21 N -0.398 5.398 22 S 0.324 5.676 23 C -0.060 4.060 24 C -0.078 4.078 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.092 0.908 36 H 0.246 0.754 37 H 0.247 0.753 38 H 0.084 0.916 39 H 0.119 0.881 40 H 0.067 0.933 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.783 -27.091 1.046 27.373 hybrid contribution 1.591 1.430 1.408 2.561 sum 5.374 -25.661 2.454 26.332 Atomic orbital electron populations 1.70029 1.05915 1.27221 1.47333 1.25020 0.95083 0.99108 0.94633 0.86117 0.79645 0.81890 0.77892 1.19619 1.20560 1.20588 1.22732 0.94541 0.90786 1.58355 0.90917 1.84636 1.09500 0.99440 1.96844 1.23229 1.02908 0.97341 1.02763 1.21290 0.96887 0.91931 1.03183 1.22194 0.97313 0.86124 1.01105 1.62203 1.26912 1.03155 1.34288 1.22132 0.92981 0.89381 1.02504 1.22683 0.99047 0.98876 0.87677 1.58155 1.25546 0.97333 1.34194 1.26645 0.91887 0.97042 0.92492 1.66854 1.24009 1.08615 1.30897 1.19722 0.91303 0.85049 0.87879 1.41475 1.61811 1.16182 1.18032 1.77350 1.29162 1.23024 1.10251 1.84982 1.55714 1.02830 1.24028 1.22497 0.90357 0.89611 1.03549 1.22321 0.99638 0.94831 0.91024 0.92357 0.92330 0.92092 0.90672 0.91640 0.94507 0.90453 0.93319 0.88717 0.88613 0.90752 0.75365 0.75270 0.91582 0.88143 0.93281 0.88105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.75 13.22 55.49 0.73 -25.01 16 2 C 0.07 1.98 5.49 -17.43 -0.10 1.89 16 3 Si 0.92 21.32 29.55 -169.99 -5.02 16.29 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.60 9.50 30.94 0.29 -14.30 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.13 -3.39 21.44 -107.50 -2.30 -5.69 16 10 C -0.11 -2.17 5.67 37.16 0.21 -1.96 16 11 C -0.09 -1.41 5.15 -26.73 -0.14 -1.54 16 12 C 0.06 0.71 4.96 -3.82 -0.02 0.69 16 13 N -0.54 -5.46 4.71 -234.46 -1.10 -6.57 16 14 C 0.06 0.47 5.61 -3.77 -0.02 0.44 16 15 C 0.04 0.33 4.71 -3.77 -0.02 0.31 16 16 N -0.43 -4.01 4.77 -174.39 -0.83 -4.84 16 17 C 0.30 3.10 7.02 -86.40 -0.61 2.49 16 18 N -0.57 -6.48 10.50 -17.39 -0.18 -6.67 16 19 C 0.54 5.83 8.74 -324.68 -2.84 2.99 16 20 N -0.82 -5.77 9.12 27.31 0.25 -5.52 16 21 N -0.55 -6.49 12.22 27.25 0.33 -6.16 16 22 S 0.19 1.90 22.17 -107.50 -2.38 -0.49 16 23 C 0.07 0.61 5.53 -3.76 -0.02 0.59 16 24 C 0.05 0.49 5.41 -3.77 -0.02 0.47 16 25 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16 27 H 0.06 1.16 8.14 -51.91 -0.42 0.73 16 28 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.06 0.98 6.50 -51.93 -0.34 0.64 16 30 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 31 H 0.08 0.86 8.03 -51.93 -0.42 0.44 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.63 8.07 -51.93 -0.42 0.21 16 34 H 0.10 0.57 7.73 -51.93 -0.40 0.17 16 35 H 0.07 0.54 8.01 -51.93 -0.42 0.13 16 36 H 0.42 2.20 8.96 -40.82 -0.37 1.83 16 37 H 0.42 2.14 8.96 -40.82 -0.37 1.78 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.93 8.00 -51.93 -0.42 0.52 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 1.02 6.34 -51.93 -0.33 0.69 16 LS Contribution 360.48 15.07 5.43 5.43 Total: -1.00 -33.11 360.48 -14.32 -47.43 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -5.97 Total: -0.30 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -3.27 Total: -7.92 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.80 Total: -54.76 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -4.69 Total: -6.18 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.11 -14.32 -47.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268329629.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.694 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds