Wall clock time and date at job start Tue Mar 31 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31418 * 125.93380 * 2 1 4 4 N 1.40439 * 108.51180 * 179.85826 * 3 2 1 5 5 C 1.46495 * 126.10285 * 180.08651 * 4 3 2 6 6 C 1.34948 * 107.79354 * 0.32770 * 4 3 2 7 7 C 1.37113 * 107.32950 * 359.89213 * 6 4 3 8 8 N 1.41902 * 121.27107 * 179.69981 * 7 6 4 9 9 S 1.65606 * 122.45914 * 167.12291 * 8 7 6 10 10 O 1.42101 * 104.27697 * 206.07348 * 9 8 7 11 11 O 1.42101 * 104.27537 * 333.93414 * 9 8 7 12 12 C 1.81398 * 104.44618 * 90.00074 * 9 8 7 13 13 C 1.52995 * 109.46928 * 180.02562 * 12 9 8 14 14 C 1.53004 * 109.47050 * 179.97438 * 13 12 9 15 15 C 1.50699 * 109.47095 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00306 * 0.02562 * 15 14 13 17 17 C 1.37886 * 120.00136 * 179.97438 * 15 14 13 18 18 N 1.31507 * 119.99702 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00141 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47384 * 90.00094 * 19 17 15 21 21 H 1.48498 * 109.47196 * 210.00199 * 19 17 15 22 22 H 1.48506 * 109.47060 * 330.00089 * 19 17 15 23 23 C 1.47945 * 115.08491 * 347.10488 * 8 7 6 24 24 C 1.53326 * 108.45217 * 41.20927 * 23 8 7 25 25 O 1.36006 * 130.23138 * 180.02562 * 6 4 3 26 26 H 1.09001 * 109.46953 * 269.68941 * 1 2 3 27 27 H 1.09000 * 109.47318 * 29.68539 * 1 2 3 28 28 H 1.09000 * 109.47161 * 149.69169 * 1 2 3 29 29 H 1.09007 * 109.47310 * 270.28898 * 5 4 3 30 30 H 1.09005 * 109.47386 * 30.28689 * 5 4 3 31 31 H 1.08998 * 109.47324 * 150.28940 * 5 4 3 32 32 H 1.09003 * 109.46981 * 300.00302 * 12 9 8 33 33 H 1.09001 * 109.47285 * 60.00466 * 12 9 8 34 34 H 1.08994 * 109.47483 * 300.00164 * 13 12 9 35 35 H 1.09000 * 109.47284 * 60.00712 * 13 12 9 36 36 H 1.09003 * 109.47202 * 299.99820 * 14 13 12 37 37 H 1.09001 * 109.47180 * 60.00406 * 14 13 12 38 38 H 0.97001 * 120.00476 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.64005 * 281.51761 * 23 8 7 40 40 H 1.09007 * 109.80537 * 160.99753 * 23 8 7 41 41 H 1.08999 * 109.37240 * 180.85695 * 24 23 8 42 42 H 1.09004 * 109.26924 * 61.16740 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2783 1.0641 0.0000 4 7 3.6182 0.6436 0.0033 5 6 4.7962 1.5145 0.0062 6 6 3.6270 -0.7058 -0.0021 7 6 2.3208 -1.1227 -0.0061 8 7 1.9879 -2.5021 -0.0186 9 16 0.4551 -3.0493 0.2875 10 8 0.6460 -4.3671 0.7838 11 8 -0.1226 -2.0368 1.1003 12 6 -0.3439 -3.0916 -1.3405 13 6 -1.7837 -3.5864 -1.1892 14 6 -2.4578 -3.6215 -2.5622 15 6 -3.8758 -4.1094 -2.4133 16 1 -4.2582 -4.3682 -1.4370 17 6 -4.6856 -4.2245 -3.5234 18 7 -4.2202 -3.9089 -4.7122 19 14 -6.4434 -4.8286 -3.3387 20 1 -7.3436 -3.6700 -3.1097 21 1 -6.8554 -5.5386 -4.5762 22 1 -6.5287 -5.7577 -2.1833 23 6 3.1105 -3.4155 -0.3256 24 6 4.3584 -2.9156 0.4117 25 8 4.6710 -1.5775 -0.0012 26 1 -0.3633 -0.0056 1.0277 27 1 -0.3634 0.8928 -0.5089 28 1 -0.3633 -0.8872 -0.5186 29 1 5.0879 1.7347 -1.0208 30 1 4.5596 2.4441 0.5239 31 1 5.6178 1.0128 0.5175 32 1 -0.3475 -2.0896 -1.7695 33 1 0.2053 -3.7661 -1.9973 34 1 -1.7804 -4.5882 -0.7599 35 1 -2.3327 -2.9115 -0.5325 36 1 -2.4612 -2.6193 -2.9911 37 1 -1.9090 -4.2961 -3.2193 38 1 -4.7896 -3.9902 -5.4933 39 1 3.2964 -3.4195 -1.3996 40 1 2.8674 -4.4245 0.0079 41 1 5.1996 -3.5701 0.1835 42 1 4.1712 -2.9285 1.4854 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271900170.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:28 Heat of formation + Delta-G solvation = -8.730051 kcal Electronic energy + Delta-G solvation = -27035.189328 eV Core-core repulsion = 23145.735418 eV Total energy + Delta-G solvation = -3889.453911 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 7.23 seconds Orbital eigenvalues (eV) -41.87885 -39.00213 -37.20282 -36.16227 -35.74781 -34.75064 -33.43191 -32.23420 -30.68413 -29.75111 -27.84023 -27.53072 -25.73742 -24.05967 -23.64844 -21.26416 -20.50597 -20.30928 -18.62782 -18.20776 -17.74073 -16.95463 -16.65538 -16.21812 -15.91758 -15.77341 -15.60852 -14.55346 -14.49185 -14.44960 -14.13740 -14.05121 -13.50373 -13.34463 -12.89867 -12.76690 -12.64446 -12.54814 -12.35709 -12.24780 -11.98996 -11.80239 -11.44722 -11.38439 -11.20303 -11.08764 -10.94319 -10.91544 -10.76998 -10.48137 -10.34830 -9.97424 -9.41135 -9.15335 -8.98104 -8.41618 -7.78161 -6.06402 -4.09688 0.24423 1.53967 1.76866 2.45887 2.56847 3.18140 3.30221 3.36493 3.40190 3.89178 4.01270 4.14763 4.36460 4.41477 4.51564 4.63970 4.76304 4.81676 4.92113 5.01814 5.09751 5.11060 5.16534 5.17416 5.30075 5.34296 5.63527 5.72949 5.91189 5.91834 5.93988 6.13459 6.22323 6.29551 6.41853 6.71151 6.83408 7.03292 7.51067 7.55733 7.64973 7.91307 8.31205 8.96512 9.55135 11.04762 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.020718 B = 0.003146 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.169063 B = 8896.988048 C = 9420.381657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.106 3.894 3 N -0.274 5.274 4 N -0.359 5.359 5 C 0.108 3.892 6 C 0.249 3.751 7 C -0.052 4.052 8 N -0.924 5.924 9 S 2.592 3.408 10 O -0.956 6.956 11 O -0.939 6.939 12 C -0.607 4.607 13 C -0.105 4.105 14 C 0.031 3.969 15 C -0.527 4.527 16 H 0.058 0.942 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.076 3.924 24 C 0.061 3.939 25 O -0.298 6.298 26 H 0.110 0.890 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.022 0.978 37 H 0.020 0.980 38 H 0.262 0.738 39 H 0.087 0.913 40 H 0.119 0.881 41 H 0.129 0.871 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.246 6.385 9.125 23.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.060 4.060 3 N -0.101 5.101 4 N -0.149 5.149 5 C -0.033 4.033 6 C 0.073 3.927 7 C -0.156 4.156 8 N -0.753 5.753 9 S 2.691 3.309 10 O -0.946 6.946 11 O -0.929 6.929 12 C -0.740 4.740 13 C -0.144 4.144 14 C -0.007 4.007 15 C -0.565 4.565 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.722 3.278 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.049 4.049 24 C -0.016 4.016 25 O -0.206 6.206 26 H 0.128 0.872 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.152 0.848 33 H 0.147 0.853 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.040 0.960 37 H 0.039 0.961 38 H 0.071 0.929 39 H 0.105 0.895 40 H 0.137 0.863 41 H 0.147 0.853 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 21.276 7.385 9.784 24.555 hybrid contribution -0.766 -1.271 -0.775 1.674 sum 20.510 6.114 9.009 23.221 Atomic orbital electron populations 1.20709 0.84942 1.02138 1.05285 1.21755 0.97461 0.88107 0.98634 1.77917 0.83588 1.19446 1.29179 1.47903 1.06590 1.00738 1.59700 1.21859 0.83350 0.94509 1.03585 1.18228 0.86882 0.83996 1.03560 1.16995 0.91779 0.84264 1.22581 1.56041 1.25715 1.08712 1.84869 1.05810 0.72581 0.73786 0.78705 1.93546 1.84024 1.38716 1.78363 1.93701 1.75963 1.57105 1.66134 1.30663 1.10822 1.11378 1.21098 1.21531 0.88321 1.00408 1.04154 1.19065 0.94841 0.97808 0.89012 1.21240 0.96982 1.44522 0.93749 0.92335 1.25017 0.98690 0.95369 0.95267 1.69953 1.36526 1.48485 0.98391 0.86560 0.84681 0.78998 0.77604 1.20529 1.21192 1.19739 1.22365 0.86301 0.94769 1.01479 1.23341 0.98940 0.79738 0.99611 1.86159 1.30832 1.19986 1.83595 0.87221 0.90988 0.91612 0.90623 0.88854 0.89509 0.84839 0.85255 0.91541 0.91319 0.95980 0.96120 0.92873 0.89505 0.86272 0.85345 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 8.25 36.01 0.30 -0.73 16 2 C 0.11 1.58 7.02 -82.61 -0.58 1.00 16 3 N -0.27 -3.98 12.60 33.53 0.42 -3.56 16 4 N -0.36 -4.44 4.02 -67.95 -0.27 -4.71 16 5 C 0.11 0.79 11.48 59.84 0.69 1.48 16 6 C 0.25 3.23 7.76 -16.59 -0.13 3.10 16 7 C -0.05 -0.74 6.37 -83.44 -0.53 -1.27 16 8 N -0.92 -12.15 3.35 -57.37 -0.19 -12.34 16 9 S 2.59 39.13 4.91 -107.50 -0.53 38.60 16 10 O -0.96 -16.24 16.78 -57.54 -0.97 -17.21 16 11 O -0.94 -15.66 12.50 -57.54 -0.72 -16.38 16 12 C -0.61 -9.41 5.60 37.16 0.21 -9.20 16 13 C -0.10 -2.06 5.16 -26.73 -0.14 -2.20 16 14 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 15 C -0.53 -14.62 9.11 -34.44 -0.31 -14.93 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 19 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 C 0.08 0.73 6.70 -3.08 -0.02 0.71 16 24 C 0.06 0.49 7.07 37.33 0.26 0.75 16 25 O -0.30 -3.18 10.62 -19.76 -0.21 -3.39 16 26 H 0.11 1.61 6.91 -51.93 -0.36 1.25 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 0.93 3.45 -51.93 -0.18 0.75 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.13 1.92 6.40 -51.92 -0.33 1.59 16 33 H 0.13 1.78 8.14 -51.92 -0.42 1.36 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.12 1.02 7.06 -51.93 -0.37 0.65 16 41 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 351.46 15.07 5.30 5.30 Total: -1.00 -35.82 351.46 -7.80 -43.62 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -5.85 Total: -1.56 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: -0.49 Total: -19.10 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.69 Total: -46.25 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -1.89 Total: -36.98 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 39.13 SS G_CDS: -0.53 Total: 38.60 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.82 -7.80 -43.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271900170.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.887 kcal (2) G-P(sol) polarization free energy of solvation -35.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.23 seconds