Wall clock time and date at job start Tue Mar 31 2020 07:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46623 * 2 1 4 4 H 1.08995 * 109.47069 * 305.21893 * 3 2 1 5 5 C 1.50699 * 109.46617 * 185.21612 * 3 2 1 6 6 H 1.07998 * 120.00023 * 239.99954 * 5 3 2 7 7 C 1.37883 * 119.99720 * 60.00558 * 5 3 2 8 8 N 1.31515 * 120.00166 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99760 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46758 * 89.99952 * 9 7 5 11 11 H 1.48497 * 109.47123 * 209.99850 * 9 7 5 12 12 H 1.48502 * 109.47289 * 330.00069 * 9 7 5 13 13 N 1.46499 * 109.46987 * 65.22297 * 3 2 1 14 14 S 1.65606 * 119.99904 * 215.48438 * 13 3 2 15 15 O 1.42105 * 106.39837 * 309.82105 * 14 13 3 16 16 O 1.42092 * 106.40158 * 176.89652 * 14 13 3 17 17 C 1.76203 * 107.21762 * 63.35569 * 14 13 3 18 18 C 1.39871 * 126.04075 * 264.54905 * 17 14 13 19 19 N 1.30837 * 108.20042 * 179.74308 * 18 17 14 20 20 N 1.40084 * 108.20525 * 0.40145 * 19 18 17 21 21 C 1.46503 * 126.03730 * 179.85725 * 20 19 18 22 22 H 1.09003 * 110.98438 * 28.88584 * 21 20 19 23 23 C 1.55306 * 111.12362 * 264.68981 * 21 20 19 24 24 C 1.54383 * 102.24988 * 207.94627 * 23 21 20 25 25 O 1.43230 * 107.58941 * 21.35588 * 24 23 21 26 26 C 1.43642 * 109.97547 * 1.71379 * 25 24 23 27 27 C 1.34943 * 107.92473 * 359.59304 * 20 19 18 28 28 H 1.09000 * 109.46843 * 304.39705 * 1 2 3 29 29 H 1.08993 * 109.47901 * 64.40269 * 1 2 3 30 30 H 1.09005 * 109.47088 * 184.40714 * 1 2 3 31 31 H 1.08999 * 109.46958 * 240.00540 * 2 1 3 32 32 H 1.08996 * 109.47572 * 120.00102 * 2 1 3 33 33 H 0.97000 * 120.00038 * 180.02562 * 8 7 5 34 34 H 0.96997 * 120.00138 * 35.47955 * 13 3 2 35 35 H 1.07998 * 125.89754 * 359.97438 * 18 17 14 36 36 H 1.08997 * 110.85044 * 89.75571 * 23 21 20 37 37 H 1.08996 * 111.02267 * 326.21483 * 23 21 20 38 38 H 1.09001 * 109.83173 * 261.84347 * 24 23 21 39 39 H 1.09005 * 109.90476 * 140.91525 * 24 23 21 40 40 H 1.09001 * 110.31595 * 94.48321 * 26 25 24 41 41 H 1.09001 * 110.31306 * 216.65902 * 26 25 24 42 42 H 1.08006 * 126.12920 * 180.22495 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6022 1.9826 -0.8395 5 6 3.5414 1.4445 -0.1292 6 1 4.1494 1.8881 0.6453 7 6 4.1388 0.8801 -1.2363 8 7 3.3983 0.3396 -2.1792 9 14 5.9999 0.8831 -1.3967 10 1 6.5519 -0.3491 -0.7787 11 1 6.3727 0.9262 -2.8335 12 1 6.5544 2.0748 -0.7055 13 7 1.6569 2.0959 1.2541 14 16 1.2484 3.7008 1.2605 15 8 2.2896 4.3825 0.5745 16 8 0.8618 4.0110 2.5922 17 6 -0.1978 3.8749 0.2691 18 6 -0.2305 4.2293 -1.0835 19 7 -1.4802 4.2502 -1.4704 20 7 -2.2839 3.9183 -0.3721 21 6 -3.7462 3.8292 -0.3699 22 1 -4.1219 3.5519 -1.3549 23 6 -4.3871 5.1562 0.1204 24 6 -5.7203 4.6709 0.7289 25 8 -5.5738 3.2802 1.0390 26 6 -4.2440 2.8431 0.7167 27 6 -1.4730 3.6894 0.6819 28 1 -0.3633 0.5806 0.8480 29 1 -0.3635 0.4439 -0.9267 30 1 -0.3633 -1.0247 0.0790 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8186 -0.0579 -2.9579 34 1 1.6424 1.5884 2.0806 35 1 0.6278 4.4445 -1.7027 36 1 -4.5656 5.8328 -0.7152 37 1 -3.7659 5.6338 0.8781 38 1 -6.5267 4.8060 0.0081 39 1 -5.9393 5.2313 1.6379 40 1 -3.6042 2.8964 1.5976 41 1 -4.2646 1.8264 0.3241 42 1 -1.7858 3.4087 1.6768 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273963224.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:30 Heat of formation + Delta-G solvation = -41.014615 kcal Electronic energy + Delta-G solvation = -27150.907534 eV Core-core repulsion = 23260.053660 eV Total energy + Delta-G solvation = -3890.853874 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 3.31 seconds Orbital eigenvalues (eV) -41.50010 -39.59515 -36.51981 -35.88387 -35.08536 -34.08481 -32.13047 -31.02990 -30.60752 -30.29705 -28.77766 -26.58840 -23.93881 -23.02810 -22.71938 -21.63086 -20.58898 -20.13593 -18.99434 -18.05163 -17.13073 -16.86215 -16.52954 -15.95238 -15.52945 -15.26520 -15.11192 -14.88942 -14.49276 -14.30829 -14.03550 -13.69587 -13.15330 -13.01083 -12.94413 -12.79947 -12.18243 -12.04788 -11.87772 -11.74149 -11.60565 -11.46301 -11.26732 -11.20413 -11.17727 -10.90116 -10.74521 -10.44973 -10.17868 -10.10184 -9.82500 -9.80589 -9.68262 -9.57202 -9.12449 -8.39868 -8.19695 -6.03633 -4.09636 1.17165 1.55623 2.11117 2.47900 3.28390 3.33160 3.40132 3.47029 3.83576 3.91896 4.04167 4.31199 4.34999 4.43161 4.49418 4.53222 4.63088 4.74506 5.08152 5.13823 5.22186 5.24018 5.26709 5.31465 5.44732 5.53972 5.80533 6.07679 6.12743 6.30888 6.31881 6.49145 6.51522 6.71066 6.76496 6.93599 7.12028 7.46650 7.60342 7.66581 7.92903 8.13611 8.28198 8.94011 9.56447 11.00688 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.019394 B = 0.003725 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.427652 B = 7514.054634 C = 7896.289020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C 0.283 3.717 4 H 0.043 0.957 5 C -0.518 4.518 6 H 0.065 0.935 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.271 1.271 13 N -1.103 6.103 14 S 2.719 3.281 15 O -0.949 6.949 16 O -0.993 6.993 17 C -0.796 4.796 18 C 0.145 3.855 19 N -0.293 5.293 20 N -0.358 5.358 21 C 0.123 3.877 22 H 0.125 0.875 23 C -0.169 4.169 24 C 0.052 3.948 25 O -0.371 6.371 26 C 0.043 3.957 27 C 0.167 3.833 28 H 0.036 0.964 29 H 0.041 0.959 30 H 0.034 0.966 31 H 0.106 0.894 32 H 0.041 0.959 33 H 0.262 0.738 34 H 0.404 0.596 35 H 0.202 0.798 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.647 5.156 4.439 17.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C 0.179 3.821 4 H 0.060 0.940 5 C -0.558 4.558 6 H 0.083 0.917 7 C -0.139 4.139 8 N -0.533 5.533 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.196 1.196 13 N -0.863 5.863 14 S 2.804 3.196 15 O -0.939 6.939 16 O -0.983 6.983 17 C -0.892 4.892 18 C -0.044 4.044 19 N -0.111 5.111 20 N -0.136 5.136 21 C 0.020 3.980 22 H 0.143 0.857 23 C -0.207 4.207 24 C -0.025 4.025 25 O -0.289 6.289 26 C -0.035 4.035 27 C 0.016 3.984 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.124 0.876 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.237 0.763 35 H 0.219 0.781 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.123 0.877 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -17.387 5.934 3.554 18.713 hybrid contribution 1.098 -0.540 0.221 1.244 sum -16.289 5.393 3.775 17.569 Atomic orbital electron populations 1.21813 0.99283 0.99220 0.99978 1.21875 0.91738 0.99667 1.03306 1.18508 0.94725 0.90043 0.78874 0.93955 1.21549 0.91363 1.37174 1.05687 0.91726 1.24891 0.98420 0.95058 0.95494 1.69838 1.34983 1.38861 1.09595 0.86527 0.85447 0.78466 0.77228 1.20789 1.21237 1.19612 1.55540 1.83145 1.29718 1.17908 1.01037 0.73049 0.73228 0.72298 1.93588 1.52332 1.72545 1.75392 1.93494 1.84663 1.84060 1.36101 1.32005 1.17198 1.28962 1.11049 1.23679 0.95296 0.93062 0.92405 1.77449 1.02456 1.23527 1.07653 1.48877 1.05583 1.51696 1.07470 1.23038 0.75620 0.96597 1.02784 0.85706 1.23593 0.97041 0.97445 1.02632 1.23146 0.96732 0.82144 1.00463 1.88502 1.29460 1.24816 1.86156 1.23746 0.84638 0.98586 0.96506 1.22303 0.89069 0.93125 0.93928 0.94476 0.93998 0.94670 0.87642 0.94070 0.92791 0.76280 0.78144 0.88521 0.89380 0.90331 0.90416 0.90704 0.87704 0.79706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.85 37.16 0.37 -2.19 16 2 C -0.13 -2.67 5.38 -26.73 -0.14 -2.82 16 3 C 0.28 6.41 2.16 -69.08 -0.15 6.26 16 4 H 0.04 1.03 7.76 -51.93 -0.40 0.62 16 5 C -0.52 -13.59 8.84 -34.44 -0.30 -13.90 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.06 1.67 5.29 -17.82 -0.09 1.58 16 8 N -0.89 -24.06 11.29 55.43 0.63 -23.43 16 9 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 13 N -1.10 -21.01 4.84 -5.88 -0.03 -21.04 16 14 S 2.72 50.76 5.79 -107.50 -0.62 50.14 16 15 O -0.95 -21.32 17.62 -57.17 -1.01 -22.32 16 16 O -0.99 -18.97 17.89 -57.17 -1.02 -20.00 16 17 C -0.80 -12.97 5.89 -40.01 -0.24 -13.20 16 18 C 0.14 2.41 11.77 -17.36 -0.20 2.21 16 19 N -0.29 -4.60 12.58 30.62 0.39 -4.21 16 20 N -0.36 -4.62 3.68 -52.68 -0.19 -4.81 16 21 C 0.12 1.15 4.26 -65.68 -0.28 0.87 16 22 H 0.13 1.10 8.14 -51.93 -0.42 0.68 16 23 C -0.17 -1.27 6.72 -24.78 -0.17 -1.44 16 24 C 0.05 0.35 7.79 37.88 0.30 0.64 16 25 O -0.37 -3.40 11.36 -35.23 -0.40 -3.80 16 26 C 0.04 0.36 7.15 38.19 0.27 0.64 16 27 C 0.17 2.25 10.38 -17.23 -0.18 2.07 16 28 H 0.04 0.57 7.64 -51.93 -0.40 0.18 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.11 2.55 5.95 -51.93 -0.31 2.24 16 32 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 34 H 0.40 6.74 8.84 -34.47 -0.30 6.44 16 35 H 0.20 3.21 8.06 -52.49 -0.42 2.78 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.59 6.20 -51.93 -0.32 0.27 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.19 1.90 6.75 -52.48 -0.35 1.54 16 LS Contribution 362.00 15.07 5.46 5.46 Total: -1.00 -32.86 362.00 -8.52 -41.38 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.86 Total: 5.88 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -0.82 Total: -19.27 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: 0.79 Total: -53.50 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -2.43 Total: -46.12 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 50.76 SS G_CDS: -0.62 Total: 50.14 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.86 -8.52 -41.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273963224.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.365 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.31 seconds