Wall clock time and date at job start Tue Mar 31 2020 07:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47063 * 2 1 4 4 H 1.09002 * 109.46792 * 304.14282 * 3 2 1 5 5 C 1.50697 * 109.47346 * 184.14068 * 3 2 1 6 6 H 1.08004 * 119.99923 * 245.49414 * 5 3 2 7 7 C 1.37873 * 119.99811 * 65.49192 * 5 3 2 8 8 N 1.31516 * 120.00320 * 9.43263 * 7 5 3 9 9 Si 1.86808 * 119.99632 * 189.43375 * 7 5 3 10 10 H 1.48503 * 109.46593 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.46954 * 299.99909 * 9 7 5 12 12 H 1.48502 * 109.47222 * 60.00170 * 9 7 5 13 13 N 1.46507 * 109.47084 * 64.13711 * 3 2 1 14 14 S 1.65594 * 119.99896 * 215.36083 * 13 3 2 15 15 O 1.42101 * 106.40278 * 177.81328 * 14 13 3 16 16 O 1.42094 * 106.40587 * 310.73225 * 14 13 3 17 17 C 1.76203 * 107.22072 * 64.27500 * 14 13 3 18 18 C 1.39870 * 126.03949 * 94.19553 * 17 14 13 19 19 N 1.30839 * 108.19835 * 179.97438 * 18 17 14 20 20 N 1.40078 * 108.20985 * 359.97438 * 19 18 17 21 21 C 1.46501 * 126.03897 * 179.97438 * 20 19 18 22 22 H 1.08999 * 110.45428 * 334.32541 * 21 20 19 23 23 C 1.54509 * 110.50699 * 96.93259 * 21 20 19 24 24 C 1.54479 * 104.06279 * 118.64877 * 23 21 20 25 25 O 1.44425 * 104.80639 * 23.97310 * 24 23 21 26 26 C 1.44649 * 105.36581 * 319.57005 * 25 24 23 27 27 C 1.34951 * 107.92576 * 359.76248 * 20 19 18 28 28 H 1.08999 * 109.46806 * 184.51186 * 1 2 3 29 29 H 1.09005 * 109.47392 * 304.50554 * 1 2 3 30 30 H 1.08993 * 109.47444 * 64.51092 * 1 2 3 31 31 H 1.09001 * 109.47281 * 239.99874 * 2 1 3 32 32 H 1.09000 * 109.47327 * 119.99474 * 2 1 3 33 33 H 0.96998 * 119.99445 * 357.22712 * 8 7 5 34 34 H 0.97003 * 119.99573 * 35.36662 * 13 3 2 35 35 H 1.07997 * 125.89895 * 0.02562 * 18 17 14 36 36 H 1.09005 * 110.50972 * 237.28614 * 23 21 20 37 37 H 1.08993 * 110.51510 * 359.97438 * 23 21 20 38 38 H 1.08994 * 110.37826 * 142.80828 * 24 23 21 39 39 H 1.09007 * 110.37089 * 265.03463 * 24 23 21 40 40 H 1.08997 * 110.34115 * 281.58298 * 26 25 24 41 41 H 1.09004 * 110.50699 * 159.18577 * 26 25 24 42 42 H 1.07992 * 126.13263 * 180.23920 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6172 1.9773 -0.8506 5 6 3.5435 1.4438 -0.1026 6 1 4.1404 1.8117 0.7189 7 6 4.1568 0.9754 -1.2451 8 7 3.4385 0.7021 -2.3123 9 14 6.0083 0.7289 -1.2770 10 1 6.4170 0.2216 -2.6115 11 1 6.6847 2.0240 -1.0119 12 1 6.3949 -0.2543 -0.2334 13 7 1.6347 2.1038 1.2429 14 16 1.2294 3.7093 1.2325 15 8 0.8389 4.0333 2.5599 16 8 2.2740 4.3825 0.5436 17 6 -0.2132 3.8767 0.2347 18 6 -1.5348 3.8789 0.6927 19 7 -2.3249 4.0247 -0.3400 20 7 -1.5299 4.1207 -1.4893 21 6 -2.0149 4.2915 -2.8611 22 1 -3.0261 3.8965 -2.9595 23 6 -1.9735 5.7814 -3.2683 24 6 -1.0000 5.8159 -4.4673 25 8 -1.0356 4.4780 -5.0102 26 6 -1.0635 3.5989 -3.8618 27 6 -0.2380 4.0327 -1.1092 28 1 -0.3633 -1.0245 0.0808 29 1 -0.3634 0.5822 0.8469 30 1 -0.3634 0.4422 -0.9276 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 2.4731 0.7917 -2.2830 34 1 1.6038 1.6011 2.0720 35 1 -1.8488 3.7784 1.7211 36 1 -2.9637 6.1224 -3.5705 37 1 -1.5926 6.3908 -2.4489 38 1 -1.3396 6.5364 -5.2112 39 1 0.0069 6.0642 -4.1315 40 1 -0.0658 3.5037 -3.4332 41 1 -1.4528 2.6195 -4.1399 42 1 0.6219 4.0760 -1.7611 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273963230.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:34 Heat of formation + Delta-G solvation = -44.341533 kcal Electronic energy + Delta-G solvation = -27619.895769 eV Core-core repulsion = 23728.897629 eV Total energy + Delta-G solvation = -3890.998140 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.55119 -39.40738 -36.64555 -36.17757 -35.14789 -33.99113 -32.24379 -30.85119 -30.81730 -30.30067 -28.66115 -26.19378 -24.00170 -23.15783 -22.69680 -21.69445 -20.57019 -20.28052 -19.02247 -18.05373 -17.17638 -16.96312 -16.76629 -16.07982 -15.55964 -15.31531 -14.95370 -14.86556 -14.56931 -14.12372 -13.76985 -13.53923 -13.31647 -13.16725 -13.04104 -12.59366 -12.39272 -12.16667 -11.82454 -11.68559 -11.59240 -11.52901 -11.42990 -11.24538 -11.23293 -10.76577 -10.67117 -10.46853 -10.20234 -10.18139 -10.11897 -10.08313 -9.62482 -9.58915 -9.17020 -8.43474 -8.04528 -6.42024 -4.14024 1.11078 1.56367 2.14518 2.35837 3.44642 3.46692 3.52772 3.64326 3.87568 4.03530 4.07756 4.38479 4.40550 4.47382 4.52168 4.61554 4.76426 4.80622 5.11942 5.20625 5.25178 5.32558 5.37847 5.42399 5.45581 5.52244 5.73691 5.85346 5.88487 6.05160 6.24593 6.28821 6.36989 6.53395 6.59996 6.72498 6.78528 7.16448 7.30994 7.39443 7.87831 8.00451 8.45648 8.76601 9.53205 10.93349 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010917 B = 0.005322 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.227298 B = 5260.299927 C = 6469.561018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C 0.274 3.726 4 H 0.028 0.972 5 C -0.600 4.600 6 H 0.059 0.941 7 C 0.026 3.974 8 N -0.909 5.909 9 Si 1.065 2.935 10 H -0.283 1.283 11 H -0.286 1.286 12 H -0.287 1.287 13 N -1.098 6.098 14 S 2.720 3.280 15 O -0.986 6.986 16 O -0.952 6.952 17 C -0.804 4.804 18 C 0.133 3.867 19 N -0.295 5.295 20 N -0.357 5.357 21 C 0.123 3.877 22 H 0.122 0.878 23 C -0.168 4.168 24 C 0.041 3.959 25 O -0.360 6.360 26 C 0.034 3.966 27 C 0.179 3.821 28 H 0.039 0.961 29 H 0.047 0.953 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.267 0.733 34 H 0.406 0.594 35 H 0.197 0.803 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.113 0.887 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.654 5.834 -1.247 13.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C 0.169 3.831 4 H 0.045 0.955 5 C -0.640 4.640 6 H 0.078 0.922 7 C -0.179 4.179 8 N -0.545 5.545 9 Si 0.893 3.107 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.858 5.858 14 S 2.805 3.195 15 O -0.976 6.976 16 O -0.942 6.942 17 C -0.900 4.900 18 C -0.057 4.057 19 N -0.113 5.113 20 N -0.136 5.136 21 C 0.020 3.980 22 H 0.140 0.860 23 C -0.206 4.206 24 C -0.036 4.036 25 O -0.278 6.278 26 C -0.044 4.044 27 C 0.028 3.972 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.239 0.761 35 H 0.213 0.787 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.119 0.881 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.131 0.869 42 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -11.291 6.223 -2.826 13.198 hybrid contribution -1.113 -0.050 1.403 1.792 sum -12.404 6.172 -1.423 13.927 Atomic orbital electron populations 1.21823 0.98297 0.99916 1.00564 1.21942 0.92669 0.99759 1.02447 1.18534 0.95382 0.89258 0.79942 0.95489 1.22281 0.90784 1.45804 1.05087 0.92238 1.25734 1.06927 0.93556 0.91667 1.70877 1.08013 1.46907 1.28697 0.83593 0.74429 0.76726 0.75955 1.20850 1.21254 1.21382 1.55380 1.82775 1.29856 1.17815 1.01004 0.72835 0.73050 0.72562 1.93499 1.84458 1.83543 1.36098 1.93595 1.52403 1.72734 1.75424 1.31968 1.19125 1.31532 1.07374 1.23507 0.88984 0.94371 0.98802 1.77359 1.18376 1.24647 0.90928 1.49122 1.04115 1.53896 1.06490 1.22834 1.01168 0.97156 0.76862 0.86041 1.23439 1.02333 0.95079 0.99797 1.23520 0.99129 0.85661 0.95308 1.89256 1.95284 1.15917 1.27339 1.23929 0.99379 0.95227 0.85876 1.22473 0.88902 0.91133 0.94734 0.94158 0.93435 0.94133 0.90574 0.92732 0.92209 0.76055 0.78670 0.88813 0.89258 0.88104 0.91252 0.90212 0.86919 0.79293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.85 37.16 0.37 -2.14 16 2 C -0.13 -2.59 5.24 -26.73 -0.14 -2.73 16 3 C 0.27 6.03 1.79 -69.08 -0.12 5.90 16 4 H 0.03 0.62 6.64 -51.93 -0.35 0.27 16 5 C -0.60 -15.61 8.76 -34.44 -0.30 -15.91 16 6 H 0.06 1.60 7.83 -52.48 -0.41 1.19 16 7 C 0.03 0.68 5.17 -17.82 -0.09 0.59 16 8 N -0.91 -24.89 13.03 55.43 0.72 -24.17 16 9 Si 1.06 24.26 29.91 -169.99 -5.09 19.17 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 12 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 13 N -1.10 -20.91 4.79 -5.88 -0.03 -20.93 16 14 S 2.72 51.12 5.79 -107.50 -0.62 50.49 16 15 O -0.99 -19.24 17.84 -57.18 -1.02 -20.26 16 16 O -0.95 -21.42 17.65 -57.18 -1.01 -22.43 16 17 C -0.80 -13.10 5.97 -40.01 -0.24 -13.34 16 18 C 0.13 1.96 11.78 -17.36 -0.20 1.76 16 19 N -0.29 -4.36 12.57 30.62 0.39 -3.98 16 20 N -0.36 -4.87 3.51 -53.34 -0.19 -5.06 16 21 C 0.12 1.31 4.23 -66.36 -0.28 1.03 16 22 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 23 C -0.17 -1.50 6.88 -25.16 -0.17 -1.68 16 24 C 0.04 0.37 7.64 37.93 0.29 0.66 16 25 O -0.36 -4.23 11.65 -35.23 -0.41 -4.64 16 26 C 0.03 0.38 7.21 37.93 0.27 0.65 16 27 C 0.18 2.75 9.72 -17.22 -0.17 2.58 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.74 7.60 -51.93 -0.39 0.35 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.71 6.40 -51.93 -0.33 1.38 16 32 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.27 7.07 6.07 -40.82 -0.25 6.82 16 34 H 0.41 6.83 8.84 -34.47 -0.30 6.53 16 35 H 0.20 2.37 8.06 -52.49 -0.42 1.95 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.87 7.96 -51.93 -0.41 0.46 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 40 H 0.08 0.99 5.98 -51.93 -0.31 0.68 16 41 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.19 2.80 6.90 -52.49 -0.36 2.43 16 LS Contribution 359.73 15.07 5.42 5.42 Total: -1.00 -33.22 359.73 -8.35 -41.57 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -5.72 Total: 7.42 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: -0.79 Total: -22.61 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.89 Total: -54.14 kcal Atomic # 8 Polarization: -44.89 SS G_CDS: -2.44 Total: -47.33 kcal Atomic # 14 Polarization: 24.26 SS G_CDS: -5.09 Total: 19.17 kcal Atomic # 16 Polarization: 51.12 SS G_CDS: -0.62 Total: 50.49 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.22 -8.35 -41.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273963230.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.767 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds