Wall clock time and date at job start Tue Mar 31 2020 07:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47340 * 282.86272 * 3 2 1 5 5 C 1.36939 * 119.99787 * 264.05436 * 4 3 2 6 6 H 1.07997 * 120.00212 * 201.22957 * 5 4 3 7 7 C 1.38813 * 120.00140 * 21.22186 * 5 4 3 8 8 N 1.31629 * 119.99864 * 11.98878 * 7 5 4 9 9 Si 1.86800 * 120.00121 * 191.98579 * 7 5 4 10 10 H 1.48494 * 109.47313 * 84.98695 * 9 7 5 11 11 H 1.48510 * 109.46946 * 204.98331 * 9 7 5 12 12 H 1.48493 * 109.47045 * 324.98106 * 9 7 5 13 13 C 1.46498 * 120.00119 * 84.04475 * 4 3 2 14 14 C 1.50696 * 109.47059 * 270.00136 * 13 4 3 15 15 O 1.21287 * 120.00570 * 0.02562 * 14 13 4 16 16 N 1.34781 * 119.99843 * 180.02562 * 14 13 4 17 17 C 1.46532 * 124.98010 * 180.02562 * 16 14 13 18 18 C 1.53740 * 105.19770 * 180.02562 * 17 16 14 19 19 C 1.51217 * 104.58383 * 359.77272 * 18 17 16 20 20 C 1.38187 * 130.97137 * 179.53485 * 19 18 17 21 21 C 1.38220 * 120.15002 * 180.39974 * 20 19 18 22 22 N 1.48019 * 120.08619 * 180.25643 * 21 20 19 23 23 O 1.21800 * 120.00007 * 359.97438 * 22 21 20 24 24 O 1.21797 * 120.00074 * 179.97438 * 22 21 20 25 25 C 1.38303 * 119.82844 * 0.27177 * 21 20 19 26 26 C 1.37840 * 120.22258 * 359.97438 * 25 21 20 27 27 C 1.38559 * 108.55607 * 0.38418 * 19 18 17 28 28 H 4.40648 * 5.51317 * 179.97438 * 4 1 2 29 29 H 1.08994 * 109.47489 * 162.86056 * 3 2 1 30 30 H 1.09004 * 109.47600 * 42.85911 * 3 2 1 31 31 H 0.97000 * 119.99754 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.46699 * 150.00851 * 13 4 3 33 33 H 1.08997 * 109.46896 * 30.00566 * 13 4 3 34 34 H 1.08998 * 110.30068 * 298.95253 * 17 16 14 35 35 H 1.09002 * 110.29841 * 61.09369 * 17 16 14 36 36 H 1.09000 * 110.41488 * 118.77904 * 18 17 16 37 37 H 1.09006 * 110.41418 * 241.10289 * 18 17 16 38 38 H 1.08004 * 119.92163 * 0.67621 * 20 19 18 39 39 H 1.07997 * 119.88479 * 180.02562 * 25 21 20 40 40 H 1.07994 * 119.85815 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.3066 1.3466 5 6 3.4781 0.7089 2.1985 6 1 4.1406 0.5160 3.0293 7 6 2.9751 1.9865 1.9942 8 7 1.9937 2.1782 1.1381 9 14 3.6906 3.4335 2.9342 10 1 4.8879 3.9445 2.2198 11 1 2.6744 4.5120 3.0313 12 1 4.0782 2.9943 4.2987 13 6 3.2552 -1.7002 1.7817 14 6 1.9643 -2.1399 2.4230 15 8 1.0347 -1.3655 2.5078 16 7 1.8428 -3.3937 2.9024 17 6 0.6418 -3.9349 3.5441 18 6 0.9992 -5.3846 3.9106 19 6 2.4211 -5.5601 3.4268 20 6 3.2713 -6.6477 3.4883 21 6 4.5512 -6.5583 2.9741 22 7 5.4588 -7.7259 3.0356 23 8 5.0784 -8.7671 3.5403 24 8 6.5861 -7.6456 2.5815 25 6 4.9816 -5.3750 2.4021 26 6 4.1387 -4.2859 2.3431 27 6 2.8445 -4.3684 2.8607 28 1 -1.0500 0.0002 0.0001 29 1 3.0089 0.9828 -0.3028 30 1 3.0097 -0.7525 -0.6990 31 1 1.6420 3.0709 0.9957 32 1 4.0673 -1.7863 2.5037 33 1 3.4667 -2.3329 0.9198 34 1 0.4038 -3.3655 4.4425 35 1 -0.1987 -3.9165 2.8501 36 1 0.9402 -5.5296 4.9893 37 1 0.3360 -6.0811 3.3974 38 1 2.9335 -7.5711 3.9353 39 1 5.9813 -5.3042 1.9996 40 1 4.4811 -3.3647 1.8955 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281283014.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:30 Heat of formation + Delta-G solvation = 101.558126 kcal Electronic energy + Delta-G solvation = -27688.336222 eV Core-core repulsion = 23668.220814 eV Total energy + Delta-G solvation = -4020.115408 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -42.21529 -41.27859 -38.71292 -36.72392 -36.54456 -35.63328 -33.33077 -31.60916 -31.31668 -30.86202 -29.70232 -27.54139 -26.38373 -26.10018 -23.69960 -23.41770 -22.06838 -21.32513 -19.97894 -19.02981 -18.66510 -17.66067 -17.52614 -17.17369 -16.64575 -16.41068 -16.28959 -15.38775 -14.83155 -14.48812 -14.43185 -14.25637 -13.73719 -13.48497 -13.27034 -13.22679 -13.13607 -12.53026 -12.40094 -12.13421 -11.68301 -11.56652 -11.54918 -11.36219 -11.16389 -11.14266 -11.09263 -10.89402 -10.73248 -10.42440 -10.21779 -9.65489 -9.47926 -9.04078 -8.82547 -8.44066 -8.17747 -7.21595 -5.92823 -3.45457 -0.18922 0.74607 1.26520 1.40028 2.66302 2.83589 3.27411 3.31484 3.33308 3.35108 3.88550 4.09520 4.15643 4.34396 4.37122 4.48555 4.50439 4.59130 4.80223 4.80488 5.09999 5.21872 5.28714 5.35055 5.38588 5.49615 5.57239 5.58870 5.60151 5.68851 5.75423 5.79380 5.89255 5.96351 6.22684 6.43562 6.56513 7.12933 7.34333 7.42438 7.55605 7.64467 8.07054 8.41173 8.90506 9.25575 9.51975 9.95407 11.07918 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.016406 B = 0.003320 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.263754 B = 8431.559492 C = 9152.196840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.095 4.095 3 C 0.268 3.732 4 N -0.554 5.554 5 C -0.277 4.277 6 H 0.077 0.923 7 C 0.015 3.985 8 N -0.879 5.879 9 Si 0.911 3.089 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.279 1.279 13 C 0.123 3.877 14 C 0.471 3.529 15 O -0.450 6.450 16 N -0.558 5.558 17 C 0.096 3.904 18 C -0.080 4.080 19 C -0.155 4.155 20 C -0.004 4.004 21 C -0.091 4.091 22 N 0.042 4.958 23 O -0.178 6.178 24 O -0.171 6.171 25 C -0.012 4.012 26 C -0.172 4.172 27 C 0.232 3.768 28 H 0.185 0.815 29 H 0.107 0.893 30 H 0.035 0.965 31 H 0.258 0.742 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.151 0.849 39 H 0.158 0.842 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.197 -15.297 2.280 15.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 C -0.097 4.097 3 C 0.144 3.856 4 N -0.270 5.270 5 C -0.406 4.406 6 H 0.095 0.905 7 C -0.186 4.186 8 N -0.520 5.520 9 Si 0.740 3.260 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.205 1.205 13 C -0.009 4.009 14 C 0.258 3.742 15 O -0.316 6.316 16 N -0.281 5.281 17 C -0.026 4.026 18 C -0.118 4.118 19 C -0.159 4.159 20 C -0.024 4.024 21 C -0.177 4.177 22 N 0.557 4.443 23 O -0.390 6.390 24 O -0.385 6.385 25 C -0.032 4.032 26 C -0.194 4.194 27 C 0.129 3.871 28 H 0.202 0.798 29 H 0.124 0.876 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.169 0.831 39 H 0.175 0.825 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.065 -13.768 2.185 13.941 hybrid contribution -0.199 0.505 0.849 1.007 sum -0.134 -13.264 3.033 13.607 Atomic orbital electron populations 1.23999 0.95182 1.07270 1.04431 1.23868 0.94970 0.94555 0.96355 1.17966 0.83225 1.00238 0.84178 1.44296 1.72298 0.99063 1.11389 1.19201 1.23231 0.87450 1.10729 0.90547 1.25129 0.95894 0.98815 0.98768 1.70048 1.24128 1.21315 1.36524 0.86194 0.78176 0.82030 0.79573 1.20963 1.21589 1.20495 1.21682 0.92375 0.89005 0.97884 1.24457 0.94052 0.78025 0.77682 1.90816 1.40290 1.49617 1.50871 1.47500 1.12344 1.11963 1.56317 1.22124 0.88706 0.92898 0.98921 1.21131 0.91609 0.96371 1.02645 1.19881 0.97630 0.92765 1.05634 1.20015 0.89528 0.98895 0.93946 1.20681 0.92685 0.88128 1.16190 1.43473 1.01158 1.01982 0.97680 1.94513 1.80429 1.18208 1.45860 1.94527 1.05046 1.90088 1.48840 1.20732 1.00747 0.88995 0.92683 1.21176 0.91508 1.00992 1.05724 1.18837 0.89565 0.88451 0.90291 0.79775 0.87578 0.94743 0.93168 0.89433 0.90300 0.89699 0.89712 0.88664 0.88701 0.83095 0.82463 0.81821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.81 18.77 29.55 0.55 -6.26 16 2 C -0.09 -2.29 9.92 -37.13 -0.37 -2.66 16 3 C 0.27 6.03 5.44 -6.83 -0.04 5.99 16 4 N -0.55 -12.51 2.09 -177.96 -0.37 -12.88 16 5 C -0.28 -6.98 9.69 -15.06 -0.15 -7.13 16 6 H 0.08 1.86 7.84 -52.49 -0.41 1.45 16 7 C 0.02 0.39 5.07 -17.43 -0.09 0.31 16 8 N -0.88 -24.16 9.08 55.49 0.50 -23.65 16 9 Si 0.91 20.76 29.57 -169.99 -5.03 15.73 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 C 0.12 2.17 4.00 -5.20 -0.02 2.15 16 14 C 0.47 8.81 7.78 -10.99 -0.09 8.73 16 15 O -0.45 -10.64 14.71 5.55 0.08 -10.55 16 16 N -0.56 -8.00 3.13 -112.90 -0.35 -8.36 16 17 C 0.10 1.11 7.06 -3.64 -0.03 1.08 16 18 C -0.08 -0.66 6.93 -27.24 -0.19 -0.85 16 19 C -0.15 -1.56 6.23 -104.27 -0.65 -2.20 16 20 C 0.00 -0.04 9.55 -39.61 -0.38 -0.42 16 21 C -0.09 -1.02 6.86 -79.93 -0.55 -1.57 16 22 N 0.04 0.54 4.45 33.97 0.15 0.70 16 23 O -0.18 -2.42 18.46 -29.46 -0.54 -2.96 16 24 O -0.17 -2.35 18.46 -29.46 -0.54 -2.90 16 25 C -0.01 -0.12 9.53 -39.70 -0.38 -0.50 16 26 C -0.17 -1.84 8.88 -39.21 -0.35 -2.19 16 27 C 0.23 2.76 6.59 -83.57 -0.55 2.21 16 28 H 0.18 3.78 7.80 -54.09 -0.42 3.36 16 29 H 0.11 2.59 6.40 -51.93 -0.33 2.26 16 30 H 0.03 0.65 7.98 -51.93 -0.41 0.24 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.09 1.38 6.79 -51.93 -0.35 1.03 16 33 H 0.08 1.15 6.73 -51.93 -0.35 0.80 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.15 1.22 7.61 -52.48 -0.40 0.82 16 39 H 0.16 1.33 7.61 -52.49 -0.40 0.93 16 40 H 0.16 1.66 4.21 -52.49 -0.22 1.44 16 LS Contribution 347.44 15.07 5.24 5.24 Total: -1.00 -32.42 347.44 -8.25 -40.67 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -4.13 Total: 2.28 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -3.26 Total: -3.31 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -0.07 Total: -44.20 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -1.01 Total: -16.41 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.42 -8.25 -40.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281283014.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.228 kcal (2) G-P(sol) polarization free energy of solvation -32.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds