Wall clock time and date at job start Tue Mar 31 2020 07:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47313 * 300.01555 * 3 2 1 5 5 C 1.36934 * 120.00189 * 264.05308 * 4 3 2 6 6 H 1.08002 * 120.00144 * 201.22624 * 5 4 3 7 7 C 1.38816 * 120.00189 * 21.23522 * 5 4 3 8 8 N 1.31620 * 119.99897 * 11.97565 * 7 5 4 9 9 Si 1.86793 * 119.99994 * 191.98135 * 7 5 4 10 10 H 1.48501 * 109.47428 * 84.97793 * 9 7 5 11 11 H 1.48498 * 109.47018 * 204.97840 * 9 7 5 12 12 H 1.48504 * 109.47397 * 324.97848 * 9 7 5 13 13 C 1.46501 * 119.99696 * 84.05119 * 4 3 2 14 14 C 1.50694 * 109.47172 * 270.00392 * 13 4 3 15 15 O 1.21288 * 120.00166 * 359.97438 * 14 13 4 16 16 N 1.34787 * 120.00236 * 180.02562 * 14 13 4 17 17 C 1.46540 * 124.97502 * 359.96725 * 16 14 13 18 18 C 1.53734 * 105.19461 * 180.02562 * 17 16 14 19 19 C 1.51212 * 104.58343 * 0.02562 * 18 17 16 20 20 C 1.38190 * 130.97251 * 179.97438 * 19 18 17 21 21 C 1.38223 * 120.15288 * 180.02562 * 20 19 18 22 22 C 1.38295 * 119.82670 * 0.02562 * 21 20 19 23 23 N 1.48008 * 119.88901 * 179.97438 * 22 21 20 24 24 O 1.21809 * 120.00009 * 0.02562 * 23 22 21 25 25 O 1.21799 * 120.00037 * 179.97438 * 23 22 21 26 26 C 1.37844 * 120.22446 * 0.25115 * 22 21 20 27 27 C 1.38550 * 108.56257 * 0.02562 * 19 18 17 28 28 H 4.40644 * 5.51321 * 180.02562 * 4 1 2 29 29 H 1.09001 * 109.46884 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47436 * 60.01996 * 3 2 1 31 31 H 0.96999 * 119.99813 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47125 * 150.00371 * 13 4 3 33 33 H 1.09001 * 109.47259 * 30.00417 * 13 4 3 34 34 H 1.09004 * 110.29423 * 61.10583 * 17 16 14 35 35 H 1.09003 * 110.38074 * 299.01796 * 17 16 14 36 36 H 1.08994 * 110.41762 * 241.22554 * 18 17 16 37 37 H 1.09004 * 110.41278 * 118.77760 * 18 17 16 38 38 H 1.08005 * 119.92297 * 0.02562 * 20 19 18 39 39 H 1.07999 * 120.08497 * 180.02562 * 21 20 19 40 40 H 1.07999 * 119.85633 * 179.74776 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.6901 1.1960 5 6 3.4785 0.0290 2.3095 6 1 4.1410 -0.4005 3.0464 7 6 2.9753 1.3099 2.4913 8 7 1.9939 1.7456 1.7301 9 14 3.6909 2.4151 3.8163 10 1 4.8882 3.1142 3.2843 11 1 2.6747 3.4168 4.2274 12 1 4.0789 1.5930 4.9905 13 6 3.2556 -2.1501 1.2006 14 6 1.9647 -2.7594 1.6836 15 8 1.0354 -2.0445 1.9940 16 7 1.8432 -4.0989 1.7718 17 6 2.8925 -5.0620 1.4270 18 6 2.2744 -6.4441 1.6942 19 6 0.8756 -6.1470 2.1856 20 6 -0.1451 -6.9915 2.5788 21 6 -1.3559 -6.4706 2.9951 22 6 -1.5442 -5.1007 3.0167 23 7 -2.8403 -4.5413 3.4616 24 8 -3.7387 -5.2872 3.8083 25 8 -3.0082 -3.3351 3.4820 26 6 -0.5309 -4.2546 2.6200 27 6 0.6969 -4.7732 2.2036 28 1 -1.0499 -0.0002 0.0000 29 1 3.0088 1.0285 0.0005 30 1 3.0096 -0.5127 -0.8901 31 1 1.6425 2.6408 1.8569 32 1 4.0677 -2.4453 1.8649 33 1 3.4670 -2.5004 0.1903 34 1 3.7674 -4.9105 2.0593 35 1 3.1652 -4.9662 0.3760 36 1 2.8423 -6.9730 2.4595 37 1 2.2379 -7.0284 0.7747 38 1 0.0036 -8.0612 2.5609 39 1 -2.1527 -7.1316 3.3025 40 1 -0.6859 -3.1859 2.6354 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281321191.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:35 Heat of formation + Delta-G solvation = 97.896817 kcal Electronic energy + Delta-G solvation = -27978.031002 eV Core-core repulsion = 23957.756828 eV Total energy + Delta-G solvation = -4020.274174 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.09727 -41.10294 -38.56115 -36.60183 -36.41194 -35.66186 -32.66860 -31.61210 -31.42183 -30.40180 -30.05397 -27.28681 -26.11390 -26.00250 -23.76220 -23.21058 -21.97607 -21.53096 -19.79875 -18.66765 -18.32254 -17.53567 -17.39682 -16.91617 -16.48618 -16.35283 -16.14281 -15.28301 -15.01034 -14.73074 -14.33170 -14.10229 -13.65779 -13.31917 -13.19836 -13.11730 -12.82635 -12.46906 -12.21693 -12.09160 -11.77478 -11.52248 -11.46656 -11.39411 -11.05269 -11.03414 -10.99585 -10.82981 -10.48437 -10.34238 -10.13545 -9.46923 -9.42273 -8.94653 -8.71570 -8.34113 -7.96691 -7.12401 -5.84307 -3.36585 -0.11794 0.92780 1.38249 1.47345 2.81997 2.97753 3.32958 3.38478 3.41505 3.43792 3.98942 4.17830 4.22376 4.45806 4.48932 4.58672 4.65656 4.69108 4.74707 4.85394 5.17616 5.27923 5.32679 5.41017 5.43451 5.47693 5.52306 5.67926 5.79230 5.83705 5.93679 5.95824 6.01521 6.07879 6.41908 6.62726 6.69692 7.20828 7.45565 7.53492 7.63209 7.77040 8.16455 8.59789 8.99393 9.36715 9.61150 10.04687 11.16563 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.012673 B = 0.004074 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.901820 B = 6870.908091 C = 7902.481094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.098 4.098 3 C 0.271 3.729 4 N -0.555 5.555 5 C -0.276 4.276 6 H 0.075 0.925 7 C 0.015 3.985 8 N -0.878 5.878 9 Si 0.910 3.090 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.136 3.864 14 C 0.470 3.530 15 O -0.458 6.458 16 N -0.565 5.565 17 C 0.101 3.899 18 C -0.088 4.088 19 C -0.107 4.107 20 C -0.076 4.076 21 C -0.097 4.097 22 C -0.015 4.015 23 N 0.029 4.971 24 O -0.168 6.168 25 O -0.151 6.151 26 C -0.080 4.080 27 C 0.171 3.829 28 H 0.185 0.815 29 H 0.105 0.895 30 H 0.033 0.967 31 H 0.257 0.743 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.146 0.854 39 H 0.152 0.848 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.077 -19.527 -2.929 19.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 C -0.100 4.100 3 C 0.146 3.854 4 N -0.271 5.271 5 C -0.405 4.405 6 H 0.093 0.907 7 C -0.186 4.186 8 N -0.519 5.519 9 Si 0.739 3.261 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.206 1.206 13 C 0.003 3.997 14 C 0.256 3.744 15 O -0.325 6.325 16 N -0.292 5.292 17 C -0.021 4.021 18 C -0.125 4.125 19 C -0.111 4.111 20 C -0.096 4.096 21 C -0.117 4.117 22 C -0.098 4.098 23 N 0.548 4.452 24 O -0.382 6.382 25 O -0.369 6.369 26 C -0.103 4.103 27 C 0.071 3.929 28 H 0.202 0.798 29 H 0.122 0.878 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.163 0.837 39 H 0.169 0.831 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.281 -18.898 -3.017 19.416 hybrid contribution -0.730 0.724 1.139 1.534 sum 2.552 -18.174 -1.878 18.448 Atomic orbital electron populations 1.24028 0.95211 1.05909 1.05393 1.23839 0.94933 0.95589 0.95674 1.17928 0.83236 0.98591 0.85634 1.44250 1.72310 0.97781 1.12747 1.19166 1.23168 0.96744 1.01404 0.90678 1.25125 0.95909 0.99244 0.98366 1.70042 1.24071 1.17815 1.39976 0.86213 0.78112 0.80427 0.81315 1.21094 1.21557 1.20563 1.21225 0.91907 0.86761 0.99830 1.24437 0.94134 0.78123 0.77661 1.90776 1.40234 1.58332 1.43143 1.47300 1.11248 1.07278 1.63375 1.22126 0.91157 0.86574 1.02235 1.21214 0.91184 0.97449 1.02638 1.20504 0.96997 0.92461 1.01125 1.20256 0.90595 1.00022 0.98694 1.20764 0.98953 0.92053 0.99958 1.20690 0.85163 0.93918 1.10063 1.43598 1.02436 1.01016 0.98101 1.94482 1.35521 1.57821 1.50344 1.94623 1.87507 0.97223 1.57521 1.20740 0.89637 1.03044 0.96837 1.18309 0.88389 0.91093 0.95069 0.79786 0.87752 0.94932 0.93177 0.89929 0.90771 0.89427 0.89499 0.88405 0.88426 0.83678 0.83050 0.81255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.09 18.78 29.55 0.55 -6.54 16 2 C -0.10 -2.45 9.92 -37.12 -0.37 -2.82 16 3 C 0.27 6.25 5.45 -6.83 -0.04 6.22 16 4 N -0.55 -12.86 2.09 -177.95 -0.37 -13.23 16 5 C -0.28 -7.13 9.69 -15.06 -0.15 -7.28 16 6 H 0.08 1.88 7.84 -52.49 -0.41 1.47 16 7 C 0.01 0.40 5.07 -17.43 -0.09 0.31 16 8 N -0.88 -24.93 9.08 55.49 0.50 -24.43 16 9 Si 0.91 21.39 29.57 -169.99 -5.03 16.36 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.14 2.43 5.32 -5.20 -0.03 2.40 16 14 C 0.47 9.06 7.77 -10.98 -0.09 8.97 16 15 O -0.46 -11.25 12.60 5.55 0.07 -11.18 16 16 N -0.57 -8.33 3.13 -112.90 -0.35 -8.69 16 17 C 0.10 0.90 6.67 -3.64 -0.02 0.87 16 18 C -0.09 -0.60 6.93 -27.25 -0.19 -0.79 16 19 C -0.11 -1.12 6.23 -104.27 -0.65 -1.77 16 20 C -0.08 -0.69 10.04 -39.60 -0.40 -1.09 16 21 C -0.10 -1.10 9.56 -39.57 -0.38 -1.48 16 22 C -0.01 -0.23 6.84 -80.08 -0.55 -0.78 16 23 N 0.03 0.50 4.45 33.90 0.15 0.66 16 24 O -0.17 -2.78 18.44 -29.46 -0.54 -3.32 16 25 O -0.15 -2.97 18.43 -29.46 -0.54 -3.51 16 26 C -0.08 -1.38 8.97 -39.20 -0.35 -1.74 16 27 C 0.17 2.53 6.62 -83.57 -0.55 1.98 16 28 H 0.18 4.09 7.80 -54.10 -0.42 3.67 16 29 H 0.10 2.62 6.40 -51.93 -0.33 2.29 16 30 H 0.03 0.64 7.98 -51.93 -0.41 0.22 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.08 1.30 8.03 -51.93 -0.42 0.89 16 33 H 0.07 1.08 7.95 -51.93 -0.41 0.67 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.15 0.76 8.06 -52.48 -0.42 0.34 16 39 H 0.15 1.41 7.61 -52.49 -0.40 1.01 16 40 H 0.17 3.55 5.81 -52.49 -0.30 3.25 16 LS Contribution 351.31 15.07 5.29 5.29 Total: -1.00 -34.76 351.31 -8.47 -43.23 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -4.36 Total: 2.34 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -3.29 Total: -3.52 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: -0.07 Total: -45.69 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -1.02 Total: -18.01 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.76 -8.47 -43.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281321191.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.126 kcal (2) G-P(sol) polarization free energy of solvation -34.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds