Wall clock time and date at job start Tue Mar 31 2020 07:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47340 * 277.87563 * 3 2 1 5 5 C 1.37091 * 119.99961 * 96.41348 * 4 3 2 6 6 H 1.08005 * 120.00294 * 159.75405 * 5 4 3 7 7 C 1.38953 * 120.00270 * 339.47075 * 5 4 3 8 8 N 1.31417 * 119.99695 * 352.49041 * 7 5 4 9 9 Si 1.86794 * 120.00593 * 172.48723 * 7 5 4 10 10 H 1.48505 * 109.47138 * 89.99980 * 9 7 5 11 11 H 1.48493 * 109.47549 * 210.00270 * 9 7 5 12 12 H 1.48504 * 109.46845 * 330.00205 * 9 7 5 13 13 C 1.34777 * 119.99643 * 276.41062 * 4 3 2 14 14 O 1.21297 * 119.99674 * 174.59697 * 13 4 3 15 15 C 1.50697 * 120.00446 * 354.59056 * 13 4 3 16 16 H 1.09002 * 109.47131 * 32.52864 * 15 13 4 17 17 O 1.42904 * 109.46920 * 152.52704 * 15 13 4 18 18 C 1.52997 * 109.47348 * 272.52653 * 15 13 4 19 19 H 1.08997 * 109.47292 * 303.06666 * 18 15 13 20 20 O 1.42906 * 109.46857 * 63.06418 * 18 15 13 21 21 C 1.50693 * 109.47217 * 183.06438 * 18 15 13 22 22 N 1.30111 * 124.95229 * 304.69539 * 21 18 15 23 23 C 1.35782 * 109.64720 * 179.87138 * 22 21 18 24 24 C 1.39745 * 133.60213 * 180.11915 * 23 22 21 25 25 C 1.36599 * 119.88377 * 180.29755 * 24 23 22 26 26 C 1.38773 * 120.67505 * 359.97438 * 25 24 23 27 27 C 1.37865 * 120.44693 * 0.06286 * 26 25 24 28 28 C 1.38829 * 119.68695 * 359.91800 * 27 26 25 29 29 N 1.36042 * 124.95456 * 125.00294 * 21 18 15 30 30 H 0.97003 * 126.34118 * 359.94068 * 29 21 18 31 31 H 4.40638 * 5.51446 * 179.97438 * 4 1 2 32 32 H 1.09007 * 109.46358 * 157.87389 * 3 2 1 33 33 H 1.09004 * 109.46984 * 37.88103 * 3 2 1 34 34 H 0.96999 * 119.99967 * 179.97438 * 8 7 5 35 35 H 0.96694 * 114.00013 * 60.00630 * 17 15 13 36 36 H 0.96696 * 113.99600 * 72.12861 * 20 18 15 37 37 H 1.07998 * 120.05424 * 0.31544 * 24 23 22 38 38 H 1.08001 * 119.66284 * 179.97438 * 25 24 23 39 39 H 1.07997 * 119.78084 * 180.02562 * 26 25 24 40 40 H 1.07998 * 120.15277 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.1884 1.3681 5 6 3.4886 -1.4394 1.8028 6 1 4.1383 -1.5500 2.6585 7 6 3.0069 -2.5653 1.1462 8 7 2.0985 -2.4386 0.2050 9 14 3.6504 -4.2588 1.6012 10 1 2.8092 -4.8343 2.6812 11 1 3.6003 -5.1440 0.4099 12 1 5.0535 -4.1445 2.0742 13 6 3.2357 0.8677 2.1994 14 8 3.5459 0.6985 3.3598 15 6 2.9638 2.2586 1.6873 16 1 2.1996 2.2171 0.9111 17 8 2.5064 3.0812 2.7626 18 6 4.2500 2.8485 1.1055 19 1 5.0304 2.8397 1.8663 20 8 4.6684 2.0663 -0.0150 21 6 3.9968 4.2662 0.6619 22 7 3.0670 4.6316 -0.1716 23 6 3.1154 5.9770 -0.3485 24 6 2.3677 6.8760 -1.1137 25 6 2.6694 8.2080 -1.0865 26 6 3.7134 8.6816 -0.3045 27 6 4.4650 7.8131 0.4579 28 6 4.1728 6.4559 0.4432 29 7 4.7108 5.3499 1.0701 30 1 5.4588 5.3460 1.6876 31 1 -1.0499 0.0002 0.0001 32 1 3.0088 0.9529 -0.3871 33 1 3.0097 -0.8103 -0.6310 34 1 1.7625 -3.2245 -0.2536 35 1 3.1374 3.1635 3.4906 36 1 4.1147 2.1763 -0.8001 37 1 1.5527 6.5183 -1.7253 38 1 2.0894 8.8996 -1.6797 39 1 3.9390 9.7377 -0.2935 40 1 5.2766 8.1868 1.0644 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282132322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:02 Heat of formation + Delta-G solvation = 20.940829 kcal Electronic energy + Delta-G solvation = -28074.514303 eV Core-core repulsion = 24050.903067 eV Total energy + Delta-G solvation = -4023.611236 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.30283 -39.50648 -37.69534 -36.63331 -36.06433 -34.83325 -33.27054 -32.09786 -31.23814 -30.43848 -30.07333 -28.43060 -26.61663 -25.37303 -23.80309 -22.51124 -22.24170 -20.93189 -19.62075 -18.28293 -17.90990 -17.58191 -17.30895 -16.93089 -16.31143 -16.23244 -15.66154 -15.09509 -14.83470 -14.45808 -14.40338 -14.15943 -13.99911 -13.81620 -13.14926 -12.97820 -12.69599 -12.49642 -12.21003 -12.18131 -11.93425 -11.69918 -11.46181 -11.36406 -11.05713 -10.99118 -10.82455 -10.54008 -10.37380 -10.12430 -9.84421 -9.41012 -9.29125 -8.78723 -8.56691 -8.42510 -8.23214 -7.87882 -6.32341 -3.93953 0.78268 1.38059 2.57491 2.66769 3.13309 3.23607 3.27899 3.54013 3.74121 3.79995 3.90983 4.08551 4.15801 4.23531 4.37916 4.64755 4.82494 4.88792 4.92152 5.00447 5.04948 5.16080 5.22230 5.29644 5.32434 5.50779 5.58563 5.78353 5.89512 5.98059 6.24149 6.33447 6.35348 6.38793 6.72195 6.90609 7.11494 7.13883 7.44831 7.50430 7.75026 7.80682 7.99628 8.37395 8.84501 9.06202 9.28987 9.79724 10.65185 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.023425 B = 0.003254 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.007481 B = 8603.674384 C = 9057.568749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.116 4.116 3 C 0.226 3.774 4 N -0.419 5.419 5 C -0.305 4.305 6 H 0.102 0.898 7 C 0.030 3.970 8 N -0.870 5.870 9 Si 0.931 3.069 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.426 3.574 14 O -0.585 6.585 15 C 0.079 3.921 16 H 0.123 0.877 17 O -0.534 6.534 18 C 0.167 3.833 19 H 0.119 0.881 20 O -0.526 6.526 21 C 0.268 3.732 22 N -0.475 5.475 23 C 0.051 3.949 24 C -0.061 4.061 25 C -0.132 4.132 26 C -0.104 4.104 27 C -0.112 4.112 28 C 0.048 3.952 29 N -0.589 5.589 30 H 0.423 0.577 31 H 0.199 0.801 32 H 0.061 0.939 33 H 0.125 0.875 34 H 0.270 0.730 35 H 0.376 0.624 36 H 0.387 0.613 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.214 17.979 -4.485 19.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.118 4.118 3 C 0.103 3.897 4 N -0.136 5.136 5 C -0.433 4.433 6 H 0.120 0.880 7 C -0.174 4.174 8 N -0.509 5.509 9 Si 0.757 3.243 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.213 3.787 14 O -0.470 6.470 15 C 0.015 3.985 16 H 0.141 0.859 17 O -0.338 6.338 18 C 0.104 3.896 19 H 0.136 0.864 20 O -0.332 6.332 21 C 0.000 4.000 22 N -0.196 5.196 23 C -0.068 4.068 24 C -0.080 4.080 25 C -0.152 4.152 26 C -0.124 4.124 27 C -0.133 4.133 28 C -0.062 4.062 29 N -0.201 5.201 30 H 0.262 0.738 31 H 0.216 0.784 32 H 0.079 0.921 33 H 0.143 0.857 34 H 0.081 0.919 35 H 0.223 0.777 36 H 0.238 0.762 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.610 17.050 -4.479 17.994 hybrid contribution 0.815 -0.299 0.822 1.196 sum 4.425 16.751 -3.656 17.707 Atomic orbital electron populations 1.24310 0.95451 1.06443 1.01816 1.23281 0.94493 0.95370 0.98618 1.18609 0.83823 1.00969 0.86315 1.43563 1.54029 1.06803 1.09201 1.19723 1.27306 0.80787 1.15453 0.87990 1.25388 0.95302 1.00101 0.96575 1.69970 1.26499 1.30449 1.23936 0.85857 0.79311 0.81150 0.77954 1.20400 1.20781 1.19397 1.20373 0.85470 0.86329 0.86481 1.90524 1.53975 1.85407 1.17136 1.22458 0.95900 0.89631 0.90538 0.85930 1.86615 1.47075 1.69034 1.31059 1.21063 0.98469 0.80221 0.89809 0.86372 1.86764 1.57393 1.65899 1.23152 1.24301 0.89677 0.91526 0.94538 1.70333 1.20258 1.11130 1.17890 1.19094 0.97108 0.90323 1.00271 1.20070 0.98654 0.91632 0.97684 1.20633 0.98752 0.94957 1.00857 1.20867 0.95642 0.99158 0.96716 1.19951 1.01915 0.88942 1.02503 1.18914 0.98342 0.89551 0.99394 1.43030 1.30690 1.05851 1.40507 0.73810 0.78381 0.92137 0.85702 0.91943 0.77666 0.76183 0.85205 0.85403 0.85384 0.86028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.61 19.25 29.55 0.57 -5.04 16 2 C -0.12 -2.66 10.89 -37.12 -0.40 -3.06 16 3 C 0.23 4.97 4.49 -6.83 -0.03 4.94 16 4 N -0.42 -10.41 2.60 -117.93 -0.31 -10.72 16 5 C -0.31 -8.27 9.33 -14.94 -0.14 -8.41 16 6 H 0.10 2.88 7.41 -52.48 -0.39 2.49 16 7 C 0.03 0.77 5.18 -17.46 -0.09 0.68 16 8 N -0.87 -22.45 8.91 55.50 0.49 -21.95 16 9 Si 0.93 20.43 29.56 -169.99 -5.02 15.41 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 12 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 13 C 0.43 10.16 6.51 -10.99 -0.07 10.08 16 14 O -0.58 -15.66 16.11 -12.67 -0.20 -15.86 16 15 C 0.08 1.49 2.57 -27.89 -0.07 1.42 16 16 H 0.12 2.44 6.06 -51.93 -0.31 2.12 16 17 O -0.53 -9.90 12.72 -53.45 -0.68 -10.58 16 18 C 0.17 2.56 3.30 -27.89 -0.09 2.46 16 19 H 0.12 1.64 8.14 -51.93 -0.42 1.22 16 20 O -0.53 -8.20 11.51 -35.23 -0.41 -8.60 16 21 C 0.27 3.84 6.42 -154.82 -0.99 2.84 16 22 N -0.47 -7.54 11.22 -8.24 -0.09 -7.63 16 23 C 0.05 0.73 7.23 -84.70 -0.61 0.12 16 24 C -0.06 -0.72 10.05 -39.61 -0.40 -1.12 16 25 C -0.13 -1.22 9.96 -39.98 -0.40 -1.62 16 26 C -0.10 -0.90 10.03 -39.52 -0.40 -1.30 16 27 C -0.11 -1.10 10.07 -39.50 -0.40 -1.49 16 28 C 0.05 0.60 7.30 -83.99 -0.61 -0.01 16 29 N -0.59 -6.89 6.23 -8.00 -0.05 -6.94 16 30 H 0.42 3.53 8.96 -40.82 -0.37 3.16 16 31 H 0.20 3.50 7.80 -54.09 -0.42 3.08 16 32 H 0.06 1.12 3.49 -51.93 -0.18 0.94 16 33 H 0.13 2.93 6.16 -51.93 -0.32 2.61 16 34 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 35 H 0.38 5.89 8.63 45.56 0.39 6.28 16 36 H 0.39 5.24 7.36 45.56 0.34 5.57 16 37 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 39 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 347.31 15.07 5.23 5.23 Total: -1.00 -34.40 347.31 -7.69 -42.09 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -2.51 Total: 19.06 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -4.14 Total: 0.50 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.05 Total: -47.23 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -1.29 Total: -35.05 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.40 -7.69 -42.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282132322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.028 kcal (2) G-P(sol) polarization free energy of solvation -34.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds