Wall clock time and date at job start Tue Mar 31 2020 07:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46767 * 230.23603 * 3 2 1 5 5 C 1.37102 * 120.00344 * 267.56867 * 4 3 2 6 6 H 1.08001 * 120.00181 * 201.83114 * 5 4 3 7 7 C 1.38955 * 119.99659 * 21.83970 * 5 4 3 8 8 N 1.31414 * 120.00065 * 5.44155 * 7 5 4 9 9 Si 1.86798 * 119.99828 * 185.44279 * 7 5 4 10 10 H 1.48502 * 109.47173 * 89.99655 * 9 7 5 11 11 H 1.48497 * 109.47199 * 209.99920 * 9 7 5 12 12 H 1.48502 * 109.47019 * 329.99946 * 9 7 5 13 13 C 1.34783 * 119.99961 * 87.57110 * 4 3 2 14 14 O 1.21288 * 120.00248 * 184.77987 * 13 4 3 15 15 C 1.50702 * 119.99584 * 4.78542 * 13 4 3 16 16 H 1.08992 * 109.47120 * 38.03654 * 15 13 4 17 17 O 1.42896 * 109.46689 * 158.03718 * 15 13 4 18 18 C 1.53002 * 109.46937 * 278.03426 * 15 13 4 19 19 H 1.08998 * 109.46850 * 61.56812 * 18 15 13 20 20 O 1.42907 * 109.46934 * 301.56990 * 18 15 13 21 21 C 1.50690 * 109.47138 * 181.56823 * 18 15 13 22 22 N 1.30116 * 124.95355 * 305.02520 * 21 18 15 23 23 C 1.35780 * 109.64555 * 179.97438 * 22 21 18 24 24 C 1.39737 * 133.60550 * 179.97438 * 23 22 21 25 25 C 1.36603 * 119.89009 * 180.02562 * 24 23 22 26 26 C 1.38780 * 120.66884 * 359.97288 * 25 24 23 27 27 C 1.37849 * 120.44712 * 0.04979 * 26 25 24 28 28 C 1.38826 * 119.69191 * 359.95387 * 27 26 25 29 29 N 1.36041 * 124.95037 * 124.71871 * 21 18 15 30 30 H 0.97001 * 126.35089 * 0.02562 * 29 21 18 31 31 H 4.40637 * 5.51439 * 179.97438 * 4 1 2 32 32 H 1.09004 * 109.46995 * 110.24389 * 3 2 1 33 33 H 1.08996 * 109.47681 * 350.23747 * 3 2 1 34 34 H 0.96996 * 119.99977 * 180.02562 * 8 7 5 35 35 H 0.96700 * 114.00528 * 60.00268 * 17 15 13 36 36 H 0.96700 * 113.99837 * 299.99891 * 20 18 15 37 37 H 1.08005 * 120.05626 * 359.97438 * 24 23 22 38 38 H 1.08005 * 119.66577 * 180.02562 * 25 24 23 39 39 H 1.08003 * 119.76956 * 180.02562 * 26 25 24 40 40 H 1.08002 * 120.15250 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 0.8844 1.0617 5 6 3.4092 2.1990 0.7870 6 1 4.0785 2.7556 1.4262 7 6 2.8270 2.8154 -0.3139 8 7 1.9313 2.1728 -1.0294 9 14 3.3176 4.5573 -0.7770 10 1 4.4643 4.5146 -1.7196 11 1 2.1689 5.2393 -1.4254 12 1 3.7097 5.3028 0.4460 13 6 3.3120 0.4049 2.3088 14 8 3.6323 1.1547 3.2068 15 6 3.1133 -1.0628 2.5872 16 1 3.4910 -1.6462 1.7476 17 8 3.8224 -1.4224 3.7746 18 6 1.6223 -1.3485 2.7772 19 1 1.0853 -1.1001 1.8618 20 8 1.1190 -0.5561 3.8547 21 6 1.4270 -2.8088 3.0937 22 7 1.8599 -3.7943 2.3627 23 6 1.5127 -4.9750 2.9364 24 6 1.7157 -6.3127 2.5872 25 6 1.2321 -7.3067 3.3897 26 6 0.5390 -7.0030 4.5531 27 6 0.3265 -5.6906 4.9172 28 6 0.8106 -4.6671 4.1139 29 7 0.7776 -3.2889 4.1884 30 1 0.3656 -2.7608 4.8901 31 1 -1.0502 0.0000 -0.0003 32 1 3.0091 0.3564 -0.9642 33 1 3.0099 -1.0119 0.1742 34 1 1.5252 2.6029 -1.7980 35 1 3.5379 -0.9413 4.5637 36 1 1.5521 -0.7246 4.7027 37 1 2.2534 -6.5603 1.6838 38 1 1.3914 -8.3394 3.1165 39 1 0.1633 -7.8005 5.1771 40 1 -0.2138 -5.4597 5.8234 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282132328.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:14 Heat of formation + Delta-G solvation = 19.974801 kcal Electronic energy + Delta-G solvation = -28270.746772 eV Core-core repulsion = 24247.093646 eV Total energy + Delta-G solvation = -4023.653126 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.24760 -39.62476 -37.75460 -36.84921 -35.67375 -34.89560 -33.21973 -32.24650 -31.37739 -30.52227 -30.04670 -28.50478 -26.56652 -25.40382 -23.78860 -22.47422 -22.06902 -20.82126 -19.71955 -18.32602 -17.96995 -17.65732 -17.37846 -16.84961 -16.55155 -16.03747 -15.80220 -15.03331 -14.81595 -14.43919 -14.34798 -14.16341 -14.00479 -13.90009 -13.24067 -13.08275 -12.79827 -12.42805 -12.24772 -12.14033 -11.88206 -11.64795 -11.49755 -11.29282 -11.20758 -11.05136 -10.76097 -10.57867 -10.40441 -10.09394 -9.94765 -9.49280 -9.29054 -8.86017 -8.53859 -8.40817 -8.14675 -7.94730 -6.34111 -3.99330 0.85457 1.43205 2.65448 2.73012 3.11519 3.22144 3.26626 3.52845 3.73187 3.80966 3.85296 3.98034 4.11687 4.28300 4.45199 4.58462 4.76720 4.88232 4.91823 4.97995 5.10511 5.21926 5.30338 5.34510 5.40371 5.51916 5.62473 5.66781 5.88148 5.96699 6.26844 6.28510 6.39538 6.44662 6.76794 6.78916 7.02542 7.18460 7.32568 7.47710 7.67122 7.86305 7.95512 8.32576 8.76169 9.02651 9.23043 9.73598 10.62451 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.023955 B = 0.003352 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.556997 B = 8352.272780 C = 8773.683302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.102 4.102 3 C 0.223 3.777 4 N -0.431 5.431 5 C -0.309 4.309 6 H 0.103 0.897 7 C 0.032 3.968 8 N -0.870 5.870 9 Si 0.931 3.069 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.432 3.568 14 O -0.572 6.572 15 C 0.075 3.925 16 H 0.130 0.870 17 O -0.536 6.536 18 C 0.151 3.849 19 H 0.155 0.845 20 O -0.532 6.532 21 C 0.274 3.726 22 N -0.478 5.478 23 C 0.052 3.948 24 C -0.063 4.063 25 C -0.131 4.131 26 C -0.107 4.107 27 C -0.111 4.111 28 C 0.046 3.954 29 N -0.591 5.591 30 H 0.423 0.577 31 H 0.199 0.801 32 H 0.121 0.879 33 H 0.062 0.938 34 H 0.270 0.730 35 H 0.372 0.628 36 H 0.369 0.631 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.469 -15.318 7.138 17.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.104 4.104 3 C 0.101 3.899 4 N -0.150 5.150 5 C -0.436 4.436 6 H 0.120 0.880 7 C -0.172 4.172 8 N -0.509 5.509 9 Si 0.758 3.242 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.194 1.194 13 C 0.219 3.781 14 O -0.455 6.455 15 C 0.011 3.989 16 H 0.147 0.853 17 O -0.341 6.341 18 C 0.089 3.911 19 H 0.171 0.829 20 O -0.335 6.335 21 C 0.006 3.994 22 N -0.198 5.198 23 C -0.067 4.067 24 C -0.082 4.082 25 C -0.152 4.152 26 C -0.126 4.126 27 C -0.132 4.132 28 C -0.065 4.065 29 N -0.203 5.203 30 H 0.262 0.738 31 H 0.216 0.784 32 H 0.138 0.862 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.220 0.780 36 H 0.217 0.783 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.990 -14.997 5.734 16.544 hybrid contribution -0.875 1.237 1.397 2.061 sum -4.865 -13.760 7.131 16.244 Atomic orbital electron populations 1.24255 0.95366 1.05588 1.02958 1.22952 0.94172 0.95673 0.97610 1.18473 0.84482 0.91741 0.95242 1.43675 1.55609 1.09992 1.05763 1.19705 1.26186 0.86198 1.11511 0.87951 1.25394 0.94910 0.99952 0.96900 1.69903 1.25315 1.37395 1.18253 0.85847 0.77929 0.81664 0.78807 1.20262 1.20903 1.19419 1.20318 0.85240 0.89134 0.83427 1.90527 1.52803 1.58512 1.43701 1.22504 0.89972 0.96196 0.90202 0.85271 1.86626 1.63820 1.65661 1.17954 1.21574 0.96668 0.79547 0.93351 0.82856 1.86825 1.63365 1.63606 1.19696 1.24280 0.92864 0.97605 0.84613 1.70347 1.23918 0.96417 1.29157 1.19134 1.00829 0.93381 0.93328 1.20050 0.99385 0.88786 0.99999 1.20622 1.00161 0.99032 0.95379 1.20844 0.99479 0.95062 0.97254 1.19936 1.02923 0.90811 0.99525 1.18912 1.04189 0.83638 0.99718 1.42915 1.48889 1.05278 1.23171 0.73776 0.78438 0.86154 0.92050 0.91874 0.77986 0.78323 0.85258 0.85460 0.85444 0.86096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.35 18.50 29.55 0.55 -4.80 16 2 C -0.10 -2.23 8.82 -37.12 -0.33 -2.55 16 3 C 0.22 4.85 4.89 -6.83 -0.03 4.82 16 4 N -0.43 -10.56 2.59 -117.93 -0.31 -10.87 16 5 C -0.31 -8.25 9.30 -14.93 -0.14 -8.39 16 6 H 0.10 2.87 7.42 -52.49 -0.39 2.48 16 7 C 0.03 0.81 5.22 -17.47 -0.09 0.72 16 8 N -0.87 -22.00 8.66 55.50 0.48 -21.52 16 9 Si 0.93 20.27 29.56 -169.99 -5.02 15.25 16 10 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 13 C 0.43 10.10 6.45 -10.98 -0.07 10.02 16 14 O -0.57 -15.03 16.07 -13.33 -0.21 -15.25 16 15 C 0.08 1.41 2.47 -27.88 -0.07 1.34 16 16 H 0.13 2.40 6.36 -51.93 -0.33 2.07 16 17 O -0.54 -9.44 12.70 -60.24 -0.76 -10.20 16 18 C 0.15 2.54 3.32 -27.89 -0.09 2.45 16 19 H 0.15 2.89 4.22 -51.93 -0.22 2.67 16 20 O -0.53 -8.43 12.37 -43.48 -0.54 -8.97 16 21 C 0.27 4.29 6.77 -154.82 -1.05 3.25 16 22 N -0.48 -8.11 11.21 -8.24 -0.09 -8.21 16 23 C 0.05 0.79 7.23 -84.70 -0.61 0.18 16 24 C -0.06 -0.77 10.05 -39.61 -0.40 -1.17 16 25 C -0.13 -1.28 9.96 -39.97 -0.40 -1.68 16 26 C -0.11 -0.98 10.03 -39.52 -0.40 -1.37 16 27 C -0.11 -1.15 10.07 -39.51 -0.40 -1.55 16 28 C 0.05 0.60 7.30 -83.99 -0.61 -0.01 16 29 N -0.59 -7.53 6.05 -8.00 -0.05 -7.58 16 30 H 0.42 4.10 8.49 -40.82 -0.35 3.75 16 31 H 0.20 3.35 7.80 -54.08 -0.42 2.93 16 32 H 0.12 2.75 6.49 -51.93 -0.34 2.42 16 33 H 0.06 1.15 5.97 -51.93 -0.31 0.84 16 34 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 35 H 0.37 5.54 7.31 45.56 0.33 5.87 16 36 H 0.37 4.33 7.62 45.56 0.35 4.68 16 37 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 38 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 39 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 40 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 343.14 15.07 5.17 5.17 Total: -1.00 -33.45 343.14 -7.98 -41.43 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -2.50 Total: 19.49 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -4.14 Total: 1.25 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.03 Total: -48.17 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -1.52 Total: -34.42 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.45 -7.98 -41.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282132328.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.401 kcal (2) G-P(sol) polarization free energy of solvation -33.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds