Wall clock time and date at job start Tue Mar 31 2020 07:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35678 * 116.99810 * 2 1 4 4 N 1.32279 * 119.68566 * 359.97369 * 3 2 1 5 5 C 1.31931 * 121.64776 * 180.02562 * 4 3 2 6 6 C 1.38089 * 120.83677 * 0.02562 * 5 4 3 7 7 C 1.38791 * 119.28464 * 359.72032 * 6 5 4 8 8 C 1.38423 * 118.48062 * 0.54352 * 7 6 5 9 9 C 1.50707 * 120.43616 * 179.73436 * 8 7 6 10 10 N 1.46501 * 109.47168 * 259.71792 * 9 8 7 11 11 S 1.65598 * 120.00034 * 165.00185 * 10 9 8 12 12 O 1.42100 * 106.40183 * 311.46236 * 11 10 9 13 13 O 1.42101 * 106.40217 * 178.54484 * 11 10 9 14 14 N 1.65597 * 107.21541 * 65.00515 * 11 10 9 15 15 C 1.46503 * 119.99956 * 269.99520 * 14 11 10 16 16 C 1.46497 * 120.00227 * 89.99985 * 14 11 10 17 17 H 1.09003 * 109.46733 * 0.02562 * 16 14 11 18 18 C 1.53000 * 109.47145 * 119.99787 * 16 14 11 19 19 C 1.50694 * 109.47115 * 239.99861 * 16 14 11 20 20 H 1.08000 * 120.00563 * 359.97438 * 19 16 14 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 16 14 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 16 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 H 1.09001 * 109.47304 * 300.00376 * 1 2 3 28 28 H 1.09003 * 109.47155 * 60.00258 * 1 2 3 29 29 H 1.08996 * 109.47259 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.58063 * 179.97438 * 5 4 3 31 31 H 1.07993 * 120.35858 * 179.97438 * 6 5 4 32 32 H 1.07997 * 120.75626 * 180.29482 * 7 6 5 33 33 H 1.09001 * 109.46602 * 139.72335 * 9 8 7 34 34 H 1.08992 * 109.47327 * 19.72163 * 9 8 7 35 35 H 0.96998 * 119.99681 * 345.00768 * 10 9 8 36 36 H 1.08994 * 109.47665 * 270.00896 * 15 14 11 37 37 H 1.09008 * 109.46786 * 30.00504 * 15 14 11 38 38 H 1.08997 * 109.47360 * 149.99945 * 15 14 11 39 39 H 1.09007 * 109.47356 * 300.00099 * 18 16 14 40 40 H 1.09000 * 109.47156 * 59.99824 * 18 16 14 41 41 H 1.08997 * 109.47359 * 180.02562 * 18 16 14 42 42 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.3183 2.3143 -0.0005 5 6 1.8767 3.5097 -0.0011 6 6 3.2505 3.6492 -0.0016 7 6 4.0482 2.5135 0.0043 8 6 3.4321 1.2740 -0.0010 9 6 4.2558 0.0120 -0.0009 10 7 4.3213 -0.5285 -1.3610 11 16 5.4456 -1.6839 -1.7396 12 8 6.6898 -1.2116 -1.2414 13 8 5.2317 -2.0202 -3.1036 14 7 5.0730 -3.0369 -0.8604 15 6 5.6484 -3.2250 0.4737 16 6 4.1681 -4.0458 -1.4167 17 1 3.8446 -3.7353 -2.4102 18 6 4.8980 -5.3869 -1.5146 19 6 2.9664 -4.1922 -0.5193 20 1 2.8850 -3.5939 0.3762 21 6 1.9713 -5.0908 -0.8408 22 7 2.0706 -5.8197 -1.9310 23 14 0.4820 -5.2727 0.2720 24 1 -0.4353 -6.2954 -0.2920 25 1 0.9239 -5.6958 1.6251 26 1 -0.2268 -3.9713 0.3671 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.2513 4.3902 -0.0019 31 1 3.6993 4.6315 -0.0024 32 1 5.1251 2.5951 0.0088 33 1 3.7953 -0.7224 0.6600 34 1 5.2631 0.2355 0.3502 35 1 3.7062 -0.2094 -2.0398 36 1 6.5932 -3.7620 0.3896 37 1 5.8231 -2.2526 0.9344 38 1 4.9572 -3.8000 1.0898 39 1 5.7672 -5.2811 -2.1637 40 1 5.2220 -5.6976 -0.5213 41 1 4.2249 -6.1375 -1.9289 42 1 1.3707 -6.4521 -2.1569 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282916972.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:08 Heat of formation + Delta-G solvation = -71.732266 kcal Electronic energy + Delta-G solvation = -27459.440808 eV Core-core repulsion = 23567.254916 eV Total energy + Delta-G solvation = -3892.185892 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.77026 -37.83819 -36.67139 -36.11763 -35.47767 -35.21727 -32.56184 -32.23210 -30.72617 -29.04818 -27.26257 -25.95994 -25.43394 -25.13805 -23.05362 -22.18605 -20.74531 -18.83053 -18.35736 -17.24476 -17.21893 -16.76710 -16.35564 -16.13297 -15.80750 -15.35715 -14.98834 -14.44454 -14.18742 -14.13058 -13.50358 -13.35628 -13.26071 -13.14385 -12.97125 -12.66411 -12.33006 -11.94532 -11.77194 -11.69251 -11.49757 -11.34456 -11.33765 -11.18498 -11.17855 -10.94143 -10.84600 -10.41680 -10.19043 -10.04982 -9.95553 -9.73502 -9.33602 -9.07707 -8.52964 -8.44577 -7.92398 -6.05705 -4.13060 0.88302 1.16962 1.37974 3.14577 3.25678 3.32002 3.32701 3.48423 3.74246 4.15701 4.21552 4.37799 4.66852 4.71714 4.83629 5.06543 5.12697 5.24922 5.31921 5.38274 5.41237 5.44550 5.62131 5.76165 5.80868 5.91702 6.10579 6.12627 6.20115 6.31490 6.37514 6.69694 6.90687 6.91089 7.14899 7.25441 7.27353 7.56274 7.66908 7.73744 7.82151 8.08711 8.29957 8.89481 9.52328 10.99504 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.011135 B = 0.005616 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.878207 B = 4984.760650 C = 6891.981372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.286 6.286 3 C 0.337 3.663 4 N -0.544 5.544 5 C 0.140 3.860 6 C -0.218 4.218 7 C -0.027 4.027 8 C -0.166 4.166 9 C 0.177 3.823 10 N -1.121 6.121 11 S 2.784 3.216 12 O -1.000 7.000 13 O -0.981 6.981 14 N -0.989 5.989 15 C 0.106 3.894 16 C 0.269 3.731 17 H 0.058 0.942 18 C -0.144 4.144 19 C -0.520 4.520 20 H 0.063 0.937 21 C 0.064 3.936 22 N -0.888 5.888 23 Si 0.896 3.104 24 H -0.288 1.288 25 H -0.278 1.278 26 H -0.278 1.278 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.157 0.843 31 H 0.137 0.863 32 H 0.143 0.857 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.412 0.588 36 H 0.042 0.958 37 H 0.048 0.952 38 H 0.080 0.920 39 H 0.011 0.989 40 H 0.032 0.968 41 H 0.092 0.908 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.553 15.652 5.816 16.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.192 6.192 3 C 0.157 3.843 4 N -0.268 5.268 5 C -0.016 4.016 6 C -0.238 4.238 7 C -0.053 4.053 8 C -0.170 4.170 9 C 0.051 3.949 10 N -0.879 5.879 11 S 2.792 3.208 12 O -0.983 6.983 13 O -0.965 6.965 14 N -0.832 5.832 15 C -0.041 4.041 16 C 0.166 3.834 17 H 0.076 0.924 18 C -0.204 4.204 19 C -0.559 4.559 20 H 0.081 0.919 21 C -0.138 4.138 22 N -0.527 5.527 23 Si 0.724 3.276 24 H -0.214 1.214 25 H -0.204 1.204 26 H -0.203 1.203 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.174 0.826 31 H 0.154 0.846 32 H 0.161 0.839 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.245 0.755 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.030 0.970 40 H 0.051 0.949 41 H 0.111 0.889 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.511 15.151 5.247 16.042 hybrid contribution -0.957 0.186 0.608 1.149 sum -0.445 15.337 5.855 16.423 Atomic orbital electron populations 1.22906 0.77128 1.03585 1.01828 1.86443 1.22847 1.23310 1.86553 1.19830 0.88971 0.85077 0.90394 1.67409 1.40819 0.98798 1.19737 1.22418 0.92935 0.93698 0.92545 1.21947 0.94886 0.99678 1.07326 1.21446 1.00850 0.90641 0.92379 1.19920 0.91346 0.96560 1.09199 1.19840 0.98865 0.91987 0.84256 1.56038 1.55338 1.58674 1.17893 1.01755 0.73182 0.72585 0.73233 1.93530 1.41674 1.81152 1.81992 1.93593 1.86249 1.83317 1.33388 1.57685 1.61043 1.36288 1.28148 1.21203 0.97992 1.00487 0.84386 1.18713 0.86082 0.83894 0.94736 0.92407 1.22055 0.98425 1.01149 0.98781 1.21328 1.03434 1.21998 1.09149 0.91873 1.24908 0.98161 0.95536 0.95237 1.69876 1.33963 1.24627 1.24223 0.86606 0.82530 0.77694 0.80742 1.21412 1.20367 1.20326 0.92605 0.92387 0.88138 0.82561 0.84556 0.83881 0.90081 0.89985 0.75510 0.93889 0.93330 0.90169 0.96951 0.94899 0.88943 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.38 101.05 1.05 1.60 16 2 O -0.29 -4.58 9.73 -18.74 -0.18 -4.76 16 3 C 0.34 4.87 7.47 -17.12 -0.13 4.74 16 4 N -0.54 -7.13 9.22 -13.33 -0.12 -7.25 16 5 C 0.14 1.40 11.18 -17.56 -0.20 1.21 16 6 C -0.22 -1.95 10.11 -39.43 -0.40 -2.35 16 7 C -0.03 -0.28 9.81 -39.31 -0.39 -0.67 16 8 C -0.17 -2.18 5.31 -104.32 -0.55 -2.74 16 9 C 0.18 2.53 6.06 -5.19 -0.03 2.50 16 10 N -1.12 -18.44 6.05 -11.65 -0.07 -18.51 16 11 S 2.78 54.73 6.09 -107.50 -0.66 54.07 16 12 O -1.00 -20.15 16.68 -57.17 -0.95 -21.10 16 13 O -0.98 -22.63 16.70 -57.17 -0.95 -23.59 16 14 N -0.99 -20.42 3.12 -115.85 -0.36 -20.78 16 15 C 0.11 1.86 9.28 59.85 0.56 2.42 16 16 C 0.27 6.56 2.62 -69.09 -0.18 6.38 16 17 H 0.06 1.58 6.91 -51.93 -0.36 1.22 16 18 C -0.14 -3.45 8.97 37.16 0.33 -3.12 16 19 C -0.52 -13.21 7.99 -34.44 -0.28 -13.48 16 20 H 0.06 1.56 7.33 -52.49 -0.38 1.18 16 21 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 22 N -0.89 -24.38 11.32 55.43 0.63 -23.75 16 23 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 24 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 28 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 29 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.08 1.22 7.87 -51.93 -0.41 0.81 16 34 H 0.08 1.04 7.64 -51.93 -0.40 0.64 16 35 H 0.41 6.54 8.64 -34.47 -0.30 6.24 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.72 7.79 -51.92 -0.40 0.32 16 38 H 0.08 1.43 7.02 -51.93 -0.36 1.07 16 39 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 41 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 42 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 364.30 15.07 5.49 5.49 Total: -1.00 -32.34 364.30 -8.35 -40.70 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.84 Total: 6.19 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -0.31 Total: -1.94 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: 0.07 Total: -70.29 kcal Atomic # 8 Polarization: -47.36 SS G_CDS: -2.09 Total: -49.45 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 54.73 SS G_CDS: -0.66 Total: 54.07 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.34 -8.35 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282916972.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.037 kcal (2) G-P(sol) polarization free energy of solvation -32.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds