Wall clock time and date at job start Tue Mar 31 2020 07:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35678 * 116.99810 * 2 1 4 4 N 1.32279 * 119.68566 * 359.97369 * 3 2 1 5 5 C 1.31931 * 121.64776 * 180.02562 * 4 3 2 6 6 C 1.38089 * 120.83677 * 0.02562 * 5 4 3 7 7 C 1.38791 * 119.28464 * 359.72032 * 6 5 4 8 8 C 1.38423 * 118.48062 * 0.54352 * 7 6 5 9 9 C 1.50707 * 120.43616 * 179.73436 * 8 7 6 10 10 N 1.46501 * 109.47168 * 259.71792 * 9 8 7 11 11 S 1.65598 * 120.00034 * 165.00185 * 10 9 8 12 12 O 1.42100 * 106.40183 * 311.46236 * 11 10 9 13 13 O 1.42101 * 106.40217 * 178.54484 * 11 10 9 14 14 N 1.65597 * 107.21541 * 65.00515 * 11 10 9 15 15 C 1.46503 * 119.99956 * 269.99520 * 14 11 10 16 16 C 1.46497 * 120.00227 * 89.99985 * 14 11 10 17 17 H 1.09003 * 109.46733 * 0.02562 * 16 14 11 18 18 C 1.53000 * 109.47145 * 119.99787 * 16 14 11 19 19 C 1.50694 * 109.47115 * 239.99861 * 16 14 11 20 20 H 1.08000 * 120.00563 * 359.97438 * 19 16 14 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 16 14 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 16 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 H 1.09001 * 109.47304 * 300.00376 * 1 2 3 28 28 H 1.09003 * 109.47155 * 60.00258 * 1 2 3 29 29 H 1.08996 * 109.47259 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.58063 * 179.97438 * 5 4 3 31 31 H 1.07993 * 120.35858 * 179.97438 * 6 5 4 32 32 H 1.07997 * 120.75626 * 180.29482 * 7 6 5 33 33 H 1.09001 * 109.46602 * 139.72335 * 9 8 7 34 34 H 1.08992 * 109.47327 * 19.72163 * 9 8 7 35 35 H 0.96998 * 119.99681 * 345.00768 * 10 9 8 36 36 H 1.08994 * 109.47665 * 270.00896 * 15 14 11 37 37 H 1.09008 * 109.46786 * 30.00504 * 15 14 11 38 38 H 1.08997 * 109.47360 * 149.99945 * 15 14 11 39 39 H 1.09007 * 109.47356 * 300.00099 * 18 16 14 40 40 H 1.09000 * 109.47156 * 59.99824 * 18 16 14 41 41 H 1.08997 * 109.47359 * 180.02562 * 18 16 14 42 42 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.3183 2.3143 -0.0005 5 6 1.8767 3.5097 -0.0011 6 6 3.2505 3.6492 -0.0016 7 6 4.0482 2.5135 0.0043 8 6 3.4321 1.2740 -0.0010 9 6 4.2558 0.0120 -0.0009 10 7 4.3213 -0.5285 -1.3610 11 16 5.4456 -1.6839 -1.7396 12 8 6.6898 -1.2116 -1.2414 13 8 5.2317 -2.0202 -3.1036 14 7 5.0730 -3.0369 -0.8604 15 6 5.6484 -3.2250 0.4737 16 6 4.1681 -4.0458 -1.4167 17 1 3.8446 -3.7353 -2.4102 18 6 4.8980 -5.3869 -1.5146 19 6 2.9664 -4.1922 -0.5193 20 1 2.8850 -3.5939 0.3762 21 6 1.9713 -5.0908 -0.8408 22 7 2.0706 -5.8197 -1.9310 23 14 0.4820 -5.2727 0.2720 24 1 -0.4353 -6.2954 -0.2920 25 1 0.9239 -5.6958 1.6251 26 1 -0.2268 -3.9713 0.3671 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.2513 4.3902 -0.0019 31 1 3.6993 4.6315 -0.0024 32 1 5.1251 2.5951 0.0088 33 1 3.7953 -0.7224 0.6600 34 1 5.2631 0.2355 0.3502 35 1 3.7062 -0.2094 -2.0398 36 1 6.5932 -3.7620 0.3896 37 1 5.8231 -2.2526 0.9344 38 1 4.9572 -3.8000 1.0898 39 1 5.7672 -5.2811 -2.1637 40 1 5.2220 -5.6976 -0.5213 41 1 4.2249 -6.1375 -1.9289 42 1 1.3707 -6.4521 -2.1569 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282916972.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:05 Heat of formation + Delta-G solvation = -97.299631 kcal Electronic energy + Delta-G solvation = -27460.549492 eV Core-core repulsion = 23567.254916 eV Total energy + Delta-G solvation = -3893.294576 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -41.68019 -38.82534 -38.32674 -37.86466 -36.89079 -36.65292 -34.47062 -33.18663 -31.66310 -30.89995 -28.27742 -27.23913 -27.05989 -26.84042 -23.94986 -23.12566 -22.58587 -20.36122 -19.31169 -18.79562 -18.47816 -18.24868 -17.99088 -17.49033 -16.93878 -16.79467 -16.24112 -15.85278 -15.30096 -15.19881 -15.07828 -14.85099 -14.50030 -14.31003 -14.16070 -13.94783 -13.70271 -13.43653 -13.39444 -13.19715 -13.11948 -12.96044 -12.87353 -12.70960 -12.65140 -12.44085 -12.20394 -12.16099 -12.09505 -11.86773 -11.18390 -10.83899 -10.60774 -10.46579 -10.43366 -9.65012 -9.41370 -8.05253 -6.18817 -0.33618 0.17348 0.33956 1.46663 1.47366 1.54918 2.04397 2.19597 2.48252 2.62768 2.84154 3.23231 3.29491 3.47942 3.77555 3.87207 4.09488 4.10097 4.28816 4.38229 4.39349 4.43596 4.55071 4.72818 4.73537 4.80696 4.83581 4.88075 4.99548 5.05961 5.12830 5.18190 5.27230 5.29951 5.54835 5.64319 5.69504 5.87509 6.03319 6.16765 6.29512 6.32898 6.87499 6.89624 7.49982 8.99225 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.011135 B = 0.005616 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.878207 B = 4984.760650 C = 6891.981372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.316 6.316 3 C 0.312 3.688 4 N -0.562 5.562 5 C 0.134 3.866 6 C -0.202 4.202 7 C -0.026 4.026 8 C -0.182 4.182 9 C 0.175 3.825 10 N -1.113 6.113 11 S 2.800 3.200 12 O -1.002 7.002 13 O -1.020 7.020 14 N -0.996 5.996 15 C 0.098 3.902 16 C 0.274 3.726 17 H 0.022 0.978 18 C -0.138 4.138 19 C -0.521 4.521 20 H 0.068 0.932 21 C 0.017 3.983 22 N -0.920 5.920 23 Si 0.954 3.046 24 H -0.291 1.291 25 H -0.271 1.271 26 H -0.269 1.269 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.190 0.810 31 H 0.175 0.825 32 H 0.167 0.833 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.414 0.586 36 H 0.052 0.948 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.018 0.982 40 H 0.044 0.956 41 H 0.069 0.931 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.888 18.203 7.465 19.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.223 6.223 3 C 0.133 3.867 4 N -0.286 5.286 5 C -0.021 4.021 6 C -0.222 4.222 7 C -0.052 4.052 8 C -0.187 4.187 9 C 0.049 3.951 10 N -0.874 5.874 11 S 2.809 3.191 12 O -0.985 6.985 13 O -1.004 7.004 14 N -0.837 5.837 15 C -0.047 4.047 16 C 0.170 3.830 17 H 0.040 0.960 18 C -0.198 4.198 19 C -0.561 4.561 20 H 0.086 0.914 21 C -0.183 4.183 22 N -0.559 5.559 23 Si 0.780 3.220 24 H -0.217 1.217 25 H -0.196 1.196 26 H -0.194 1.194 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.207 0.793 31 H 0.193 0.807 32 H 0.185 0.815 33 H 0.088 0.912 34 H 0.119 0.881 35 H 0.248 0.752 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.037 0.963 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.866 17.718 6.920 19.041 hybrid contribution -1.019 -0.429 0.111 1.111 sum -0.153 17.288 7.030 18.664 Atomic orbital electron populations 1.22906 0.76608 1.03359 1.02415 1.86375 1.23696 1.24947 1.87263 1.20013 0.89533 0.85021 0.92136 1.67412 1.41418 0.99472 1.20322 1.23107 0.94251 0.93574 0.91216 1.22374 0.94305 1.00868 1.04639 1.21813 1.02263 0.89956 0.91199 1.19910 0.90784 0.96991 1.11009 1.19976 1.00129 0.92522 0.82485 1.55786 1.54713 1.57691 1.19178 1.01112 0.73312 0.72500 0.72143 1.93519 1.42102 1.81082 1.81825 1.93537 1.86856 1.84073 1.35964 1.57578 1.60664 1.36153 1.29352 1.21421 0.98062 1.02324 0.82903 1.18368 0.86748 0.84774 0.93146 0.96018 1.21936 0.98030 1.00405 0.99388 1.21552 1.03747 1.21595 1.09157 0.91383 1.25649 1.00796 0.95408 0.96426 1.70019 1.34755 1.25332 1.25818 0.85675 0.79375 0.77803 0.79139 1.21699 1.19585 1.19359 0.91611 0.92184 0.88736 0.79317 0.80739 0.81540 0.91222 0.88110 0.75218 0.92888 0.90520 0.90579 0.96289 0.93678 0.91252 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.14 10.38 113.37 1.18 2.32 16 2 O -0.32 -10.23 9.73 -89.96 -0.88 -11.11 16 3 C 0.31 8.79 7.47 84.78 0.63 9.43 16 4 N -0.56 -13.89 9.22 -308.94 -2.85 -16.73 16 5 C 0.13 2.26 11.18 84.64 0.95 3.20 16 6 C -0.20 -2.78 10.11 22.37 0.23 -2.56 16 7 C -0.03 -0.47 9.81 22.45 0.22 -0.24 16 8 C -0.18 -4.52 5.31 -19.67 -0.10 -4.63 16 9 C 0.17 4.78 6.06 85.64 0.52 5.30 16 10 N -1.11 -36.21 6.05 -190.78 -1.15 -37.37 16 11 S 2.80 109.57 6.09 -56.49 -0.34 109.23 16 12 O -1.00 -38.93 16.68 -128.00 -2.14 -41.07 16 13 O -1.02 -48.09 16.70 -128.00 -2.14 -50.23 16 14 N -1.00 -40.96 3.12 -520.45 -1.62 -42.59 16 15 C 0.10 3.33 9.28 127.77 1.19 4.51 16 16 C 0.27 13.63 2.62 44.24 0.12 13.75 16 17 H 0.02 1.25 6.91 -2.39 -0.02 1.23 16 18 C -0.14 -6.69 8.97 71.98 0.65 -6.05 16 19 C -0.52 -26.72 7.99 25.60 0.20 -26.51 16 20 H 0.07 3.36 7.33 -2.91 -0.02 3.33 16 21 C 0.02 0.87 5.30 84.66 0.45 1.32 16 22 N -0.92 -51.65 11.32 21.45 0.24 -51.41 16 23 Si 0.95 41.67 29.54 68.60 2.03 43.70 16 24 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 H 0.07 1.58 8.10 -2.39 -0.02 1.56 16 28 H 0.06 1.54 8.10 -2.39 -0.02 1.52 16 29 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.19 1.79 8.06 -2.91 -0.02 1.77 16 31 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 32 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 33 H 0.07 2.06 7.87 -2.39 -0.02 2.04 16 34 H 0.10 2.33 7.64 -2.39 -0.02 2.31 16 35 H 0.41 13.26 8.64 -96.75 -0.84 12.43 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.08 2.13 7.79 -2.38 -0.02 2.11 16 38 H 0.08 2.63 7.02 -2.39 -0.02 2.62 16 39 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.04 2.01 7.67 -2.39 -0.02 1.99 16 41 H 0.07 3.70 6.07 -2.39 -0.01 3.69 16 42 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -70.55 364.30 -2.43 -72.98 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 0.20 Total: 24.76 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 6.22 Total: -0.16 kcal Atomic # 7 Polarization: -142.71 SS G_CDS: -5.38 Total: -148.09 kcal Atomic # 8 Polarization: -97.26 SS G_CDS: -5.15 Total: -102.40 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Atomic # 16 Polarization: 109.57 SS G_CDS: -0.34 Total: 109.23 kcal Total: -70.55 -2.43 -72.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282916972.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.324 kcal (2) G-P(sol) polarization free energy of solvation -70.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds