Wall clock time and date at job start Tue Mar 31 2020 07:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35682 * 117.00059 * 2 1 4 4 N 1.32281 * 119.67841 * 359.97438 * 3 2 1 5 5 C 1.31931 * 121.64343 * 180.02562 * 4 3 2 6 6 C 1.38093 * 120.83637 * 0.02562 * 5 4 3 7 7 C 1.38783 * 119.28586 * 359.72176 * 6 5 4 8 8 C 1.38427 * 118.48489 * 0.53950 * 7 6 5 9 9 C 1.50698 * 120.44108 * 179.73427 * 8 7 6 10 10 N 1.46503 * 109.47080 * 259.72123 * 9 8 7 11 11 S 1.65601 * 119.99776 * 165.00203 * 10 9 8 12 12 O 1.42101 * 106.40417 * 311.46224 * 11 10 9 13 13 O 1.42103 * 106.40143 * 178.54162 * 11 10 9 14 14 N 1.65600 * 107.21882 * 65.00378 * 11 10 9 15 15 C 1.46499 * 119.99745 * 269.99851 * 14 11 10 16 16 C 1.46500 * 119.99854 * 89.99628 * 14 11 10 17 17 H 1.09000 * 109.47381 * 0.02562 * 16 14 11 18 18 C 1.53006 * 109.47249 * 239.99896 * 16 14 11 19 19 C 1.50699 * 109.46939 * 120.00244 * 16 14 11 20 20 H 1.08003 * 120.00271 * 359.97438 * 19 16 14 21 21 C 1.37879 * 120.00161 * 179.97438 * 19 16 14 22 22 N 1.31509 * 119.99895 * 0.02562 * 21 19 16 23 23 Si 1.86803 * 120.00268 * 179.97438 * 21 19 16 24 24 H 1.48498 * 109.46680 * 60.00301 * 23 21 19 25 25 H 1.48492 * 109.47298 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.46944 * 300.00817 * 23 21 19 27 27 H 1.08997 * 109.47426 * 59.99947 * 1 2 3 28 28 H 1.09004 * 109.47333 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47554 * 299.99579 * 1 2 3 30 30 H 1.08004 * 119.58429 * 179.97438 * 5 4 3 31 31 H 1.08000 * 120.35685 * 180.02562 * 6 5 4 32 32 H 1.07998 * 120.76017 * 180.29403 * 7 6 5 33 33 H 1.09001 * 109.46818 * 139.72446 * 9 8 7 34 34 H 1.08991 * 109.47509 * 19.72602 * 9 8 7 35 35 H 0.97000 * 119.99967 * 345.00272 * 10 9 8 36 36 H 1.08993 * 109.47066 * 269.99636 * 15 14 11 37 37 H 1.09004 * 109.47229 * 30.00027 * 15 14 11 38 38 H 1.09000 * 109.47083 * 149.99851 * 15 14 11 39 39 H 1.09001 * 109.47002 * 60.00085 * 18 16 14 40 40 H 1.08993 * 109.46955 * 180.02562 * 18 16 14 41 41 H 1.09000 * 109.47050 * 300.00351 * 18 16 14 42 42 H 0.97006 * 120.00358 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.3183 2.3143 -0.0005 5 6 1.8766 3.5096 -0.0010 6 6 3.2504 3.6492 -0.0016 7 6 4.0482 2.5136 0.0043 8 6 3.4321 1.2740 -0.0009 9 6 4.2558 0.0120 -0.0009 10 7 4.3213 -0.5284 -1.3611 11 16 5.4455 -1.6838 -1.7397 12 8 6.6898 -1.2115 -1.2416 13 8 5.2316 -2.0202 -3.1037 14 7 5.0731 -3.0369 -0.8605 15 6 5.6485 -3.2249 0.4736 16 6 4.1682 -4.0457 -1.4168 17 1 3.8445 -3.7352 -2.4103 18 6 2.9481 -4.1945 -0.5056 19 6 4.8870 -5.3667 -1.5133 20 1 5.9153 -5.4467 -1.1927 21 6 4.2321 -6.4733 -2.0109 22 7 2.9802 -6.3759 -2.4017 23 14 5.1234 -8.1106 -2.1311 24 1 5.5658 -8.5338 -0.7782 25 1 4.2062 -9.1333 -2.6949 26 1 6.3070 -7.9660 -3.0162 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.2512 4.3902 -0.0019 31 1 3.6992 4.6315 -0.0016 32 1 5.1251 2.5951 0.0087 33 1 3.7953 -0.7223 0.6600 34 1 5.2631 0.2356 0.3501 35 1 3.7061 -0.2094 -2.0398 36 1 6.5932 -3.7620 0.3894 37 1 5.8232 -2.2525 0.9343 38 1 4.9573 -3.7999 1.0897 39 1 2.4281 -3.2390 -0.4358 40 1 2.2751 -4.9454 -0.9193 41 1 3.2721 -4.5052 0.4876 42 1 2.5195 -7.1543 -2.7522 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282916978.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:13 Heat of formation + Delta-G solvation = -70.262352 kcal Electronic energy + Delta-G solvation = -27152.984659 eV Core-core repulsion = 23260.862508 eV Total energy + Delta-G solvation = -3892.122151 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.88619 -37.98279 -36.65532 -36.13640 -35.57148 -35.18402 -32.54311 -32.32646 -30.83642 -29.04322 -27.41616 -26.05107 -25.52081 -25.07950 -23.16833 -22.29176 -20.74287 -18.78454 -18.49441 -17.32550 -17.31204 -16.79099 -16.56342 -16.12576 -15.79275 -15.40251 -15.01061 -14.48764 -14.34808 -14.18039 -13.56212 -13.45064 -13.33930 -13.17326 -13.03134 -12.73250 -12.40353 -11.98582 -11.82775 -11.69883 -11.46173 -11.38733 -11.31935 -11.29480 -11.18929 -10.92626 -10.75998 -10.45371 -10.22856 -10.05766 -9.98143 -9.83314 -9.29961 -9.17685 -8.64780 -8.41322 -7.92247 -6.03198 -4.09536 0.78974 1.07021 1.33347 2.99240 3.32817 3.36992 3.39937 3.43978 3.69551 4.05677 4.19073 4.43583 4.58306 4.61536 4.74621 5.02396 5.05732 5.20434 5.24567 5.26508 5.28166 5.35659 5.57166 5.58364 5.69773 5.81795 6.01679 6.02894 6.17575 6.21127 6.40497 6.67675 6.85095 6.86967 7.08444 7.10262 7.19214 7.54118 7.62637 7.68867 7.84293 8.09387 8.32719 8.92324 9.55866 11.02356 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018588 B = 0.003817 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.949089 B = 7333.442189 C = 8268.554502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.293 6.293 3 C 0.335 3.665 4 N -0.542 5.542 5 C 0.140 3.860 6 C -0.215 4.215 7 C -0.026 4.026 8 C -0.166 4.166 9 C 0.177 3.823 10 N -1.127 6.127 11 S 2.780 3.220 12 O -0.998 6.998 13 O -0.974 6.974 14 N -0.989 5.989 15 C 0.109 3.891 16 C 0.269 3.731 17 H 0.058 0.942 18 C -0.147 4.147 19 C -0.520 4.520 20 H 0.061 0.939 21 C 0.064 3.936 22 N -0.891 5.891 23 Si 0.898 3.102 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.276 1.276 27 H 0.058 0.942 28 H 0.100 0.900 29 H 0.056 0.944 30 H 0.158 0.842 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.412 0.588 36 H 0.049 0.951 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.014 0.986 40 H 0.091 0.909 41 H 0.032 0.968 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.563 18.316 7.942 20.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.199 6.199 3 C 0.156 3.844 4 N -0.266 5.266 5 C -0.016 4.016 6 C -0.236 4.236 7 C -0.053 4.053 8 C -0.170 4.170 9 C 0.050 3.950 10 N -0.885 5.885 11 S 2.789 3.211 12 O -0.981 6.981 13 O -0.958 6.958 14 N -0.832 5.832 15 C -0.037 4.037 16 C 0.166 3.834 17 H 0.076 0.924 18 C -0.207 4.207 19 C -0.559 4.559 20 H 0.080 0.920 21 C -0.139 4.139 22 N -0.529 5.529 23 Si 0.726 3.274 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.202 1.202 27 H 0.077 0.923 28 H 0.118 0.882 29 H 0.075 0.925 30 H 0.175 0.825 31 H 0.156 0.844 32 H 0.162 0.838 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.244 0.756 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.033 0.967 40 H 0.109 0.891 41 H 0.051 0.949 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.654 17.855 7.401 19.671 hybrid contribution 0.367 -0.581 -0.074 0.691 sum -3.288 17.274 7.327 19.050 Atomic orbital electron populations 1.22902 0.77071 1.03464 1.02077 1.86375 1.22922 1.23700 1.86891 1.19769 0.88879 0.85003 0.90774 1.67394 1.40783 0.98797 1.19651 1.22433 0.92959 0.93680 0.92488 1.21976 0.94883 0.99765 1.06954 1.21470 1.00962 0.90622 0.92201 1.19919 0.91292 0.96599 1.09177 1.19841 0.99079 0.91912 0.84200 1.56240 1.55605 1.58806 1.17851 1.01918 0.73294 0.72503 0.73382 1.93528 1.41429 1.81211 1.81922 1.93614 1.85998 1.83110 1.33066 1.57667 1.61420 1.35692 1.28371 1.21159 0.98694 0.99961 0.83925 1.18713 0.85876 0.85846 0.92921 0.92401 1.22099 0.99802 0.99531 0.99227 1.21314 0.98653 0.93467 1.42501 0.92041 1.24899 0.94948 0.98980 0.95035 1.69853 1.10088 1.30386 1.42592 0.86566 0.79535 0.82968 0.78369 1.20269 1.21269 1.20194 0.92333 0.88176 0.92480 0.82453 0.84446 0.83776 0.90364 0.89787 0.75589 0.93281 0.93456 0.90944 0.96652 0.89052 0.94919 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.38 101.05 1.05 1.48 16 2 O -0.29 -3.97 9.73 -18.75 -0.18 -4.15 16 3 C 0.34 4.30 7.47 -17.12 -0.13 4.17 16 4 N -0.54 -6.36 9.22 -13.33 -0.12 -6.48 16 5 C 0.14 1.25 11.18 -17.56 -0.20 1.06 16 6 C -0.22 -1.73 10.11 -39.43 -0.40 -2.13 16 7 C -0.03 -0.25 9.81 -39.31 -0.39 -0.64 16 8 C -0.17 -1.97 5.31 -104.32 -0.55 -2.52 16 9 C 0.18 2.30 6.06 -5.19 -0.03 2.27 16 10 N -1.13 -17.35 6.05 -11.66 -0.07 -17.42 16 11 S 2.78 54.80 6.09 -107.50 -0.66 54.15 16 12 O -1.00 -20.44 16.68 -57.17 -0.95 -21.40 16 13 O -0.97 -23.02 16.70 -57.17 -0.95 -23.98 16 14 N -0.99 -20.54 3.12 -115.85 -0.36 -20.90 16 15 C 0.11 1.93 9.53 59.85 0.57 2.50 16 16 C 0.27 6.63 2.62 -69.08 -0.18 6.44 16 17 H 0.06 1.59 6.91 -51.93 -0.36 1.23 16 18 C -0.15 -3.34 8.95 37.16 0.33 -3.01 16 19 C -0.52 -14.09 8.37 -34.44 -0.29 -14.38 16 20 H 0.06 1.66 7.65 -52.48 -0.40 1.25 16 21 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 22 N -0.89 -24.90 11.32 55.43 0.63 -24.27 16 23 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H 0.06 0.61 8.10 -51.93 -0.42 0.18 16 28 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.56 8.10 -51.93 -0.42 0.13 16 30 H 0.16 0.91 8.06 -52.48 -0.42 0.49 16 31 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 32 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.08 1.03 7.87 -51.93 -0.41 0.62 16 34 H 0.08 1.00 7.64 -51.93 -0.40 0.60 16 35 H 0.41 6.01 8.64 -34.47 -0.30 5.71 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.69 7.79 -51.93 -0.40 0.28 16 38 H 0.07 1.24 6.43 -51.93 -0.33 0.91 16 39 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 41 H 0.03 0.70 6.66 -51.93 -0.35 0.35 16 42 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 363.63 15.07 5.48 5.48 Total: -1.00 -33.81 363.63 -8.30 -42.11 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.78 Total: 3.72 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -0.31 Total: -3.12 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: 0.07 Total: -69.07 kcal Atomic # 8 Polarization: -47.43 SS G_CDS: -2.09 Total: -49.52 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 54.80 SS G_CDS: -0.66 Total: 54.15 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.81 -8.30 -42.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282916978.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.151 kcal (2) G-P(sol) polarization free energy of solvation -33.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds