Wall clock time and date at job start Tue Mar 31 2020 07:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35682 * 117.00059 * 2 1 4 4 N 1.32281 * 119.67841 * 359.97438 * 3 2 1 5 5 C 1.31931 * 121.64343 * 180.02562 * 4 3 2 6 6 C 1.38093 * 120.83637 * 0.02562 * 5 4 3 7 7 C 1.38783 * 119.28586 * 359.72176 * 6 5 4 8 8 C 1.38427 * 118.48489 * 0.53950 * 7 6 5 9 9 C 1.50698 * 120.44108 * 179.73427 * 8 7 6 10 10 N 1.46503 * 109.47080 * 259.72123 * 9 8 7 11 11 S 1.65601 * 119.99776 * 165.00203 * 10 9 8 12 12 O 1.42101 * 106.40417 * 311.46224 * 11 10 9 13 13 O 1.42103 * 106.40143 * 178.54162 * 11 10 9 14 14 N 1.65600 * 107.21882 * 65.00378 * 11 10 9 15 15 C 1.46499 * 119.99745 * 269.99851 * 14 11 10 16 16 C 1.46500 * 119.99854 * 89.99628 * 14 11 10 17 17 H 1.09000 * 109.47381 * 0.02562 * 16 14 11 18 18 C 1.53006 * 109.47249 * 239.99896 * 16 14 11 19 19 C 1.50699 * 109.46939 * 120.00244 * 16 14 11 20 20 H 1.08003 * 120.00271 * 359.97438 * 19 16 14 21 21 C 1.37879 * 120.00161 * 179.97438 * 19 16 14 22 22 N 1.31509 * 119.99895 * 0.02562 * 21 19 16 23 23 Si 1.86803 * 120.00268 * 179.97438 * 21 19 16 24 24 H 1.48498 * 109.46680 * 60.00301 * 23 21 19 25 25 H 1.48492 * 109.47298 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.46944 * 300.00817 * 23 21 19 27 27 H 1.08997 * 109.47426 * 59.99947 * 1 2 3 28 28 H 1.09004 * 109.47333 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47554 * 299.99579 * 1 2 3 30 30 H 1.08004 * 119.58429 * 179.97438 * 5 4 3 31 31 H 1.08000 * 120.35685 * 180.02562 * 6 5 4 32 32 H 1.07998 * 120.76017 * 180.29403 * 7 6 5 33 33 H 1.09001 * 109.46818 * 139.72446 * 9 8 7 34 34 H 1.08991 * 109.47509 * 19.72602 * 9 8 7 35 35 H 0.97000 * 119.99967 * 345.00272 * 10 9 8 36 36 H 1.08993 * 109.47066 * 269.99636 * 15 14 11 37 37 H 1.09004 * 109.47229 * 30.00027 * 15 14 11 38 38 H 1.09000 * 109.47083 * 149.99851 * 15 14 11 39 39 H 1.09001 * 109.47002 * 60.00085 * 18 16 14 40 40 H 1.08993 * 109.46955 * 180.02562 * 18 16 14 41 41 H 1.09000 * 109.47050 * 300.00351 * 18 16 14 42 42 H 0.97006 * 120.00358 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.3183 2.3143 -0.0005 5 6 1.8766 3.5096 -0.0010 6 6 3.2504 3.6492 -0.0016 7 6 4.0482 2.5136 0.0043 8 6 3.4321 1.2740 -0.0009 9 6 4.2558 0.0120 -0.0009 10 7 4.3213 -0.5284 -1.3611 11 16 5.4455 -1.6838 -1.7397 12 8 6.6898 -1.2115 -1.2416 13 8 5.2316 -2.0202 -3.1037 14 7 5.0731 -3.0369 -0.8605 15 6 5.6485 -3.2249 0.4736 16 6 4.1682 -4.0457 -1.4168 17 1 3.8445 -3.7352 -2.4103 18 6 2.9481 -4.1945 -0.5056 19 6 4.8870 -5.3667 -1.5133 20 1 5.9153 -5.4467 -1.1927 21 6 4.2321 -6.4733 -2.0109 22 7 2.9802 -6.3759 -2.4017 23 14 5.1234 -8.1106 -2.1311 24 1 5.5658 -8.5338 -0.7782 25 1 4.2062 -9.1333 -2.6949 26 1 6.3070 -7.9660 -3.0162 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.2512 4.3902 -0.0019 31 1 3.6992 4.6315 -0.0016 32 1 5.1251 2.5951 0.0087 33 1 3.7953 -0.7223 0.6600 34 1 5.2631 0.2356 0.3501 35 1 3.7061 -0.2094 -2.0398 36 1 6.5932 -3.7620 0.3894 37 1 5.8232 -2.2525 0.9343 38 1 4.9573 -3.7999 1.0897 39 1 2.4281 -3.2390 -0.4358 40 1 2.2751 -4.9454 -0.9193 41 1 3.2721 -4.5052 0.4876 42 1 2.5195 -7.1543 -2.7522 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282916978.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:12 Heat of formation + Delta-G solvation = -97.294653 kcal Electronic energy + Delta-G solvation = -27154.156867 eV Core-core repulsion = 23260.862508 eV Total energy + Delta-G solvation = -3893.294360 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.68265 -38.82023 -38.32440 -37.87984 -36.87961 -36.67804 -34.50771 -33.19600 -31.67187 -30.88782 -28.24610 -27.26598 -27.08954 -26.84504 -23.94920 -23.13792 -22.57200 -20.30409 -19.31314 -18.85277 -18.57347 -18.29186 -17.98458 -17.41704 -16.93885 -16.79207 -16.25376 -15.87550 -15.30342 -15.20084 -15.11270 -14.80921 -14.59785 -14.32800 -14.14962 -13.95573 -13.72745 -13.40888 -13.37730 -13.16089 -13.12095 -12.97795 -12.82981 -12.76846 -12.57132 -12.45228 -12.22558 -12.14312 -12.12815 -11.86957 -11.12929 -10.84463 -10.62020 -10.51333 -10.45960 -9.65909 -9.42125 -8.09570 -6.23205 -0.37432 0.16606 0.33479 1.43675 1.45886 1.52772 2.06990 2.18993 2.44727 2.63314 2.84222 3.18448 3.29362 3.47446 3.77043 3.86289 4.07421 4.09585 4.27414 4.43144 4.44158 4.44765 4.54978 4.70426 4.77055 4.79405 4.84968 4.86450 5.04690 5.07912 5.12238 5.19428 5.22175 5.27506 5.53842 5.63374 5.72110 5.90053 6.01087 6.19228 6.28062 6.32844 6.84176 6.86735 7.45472 8.94333 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018588 B = 0.003817 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.949089 B = 7333.442189 C = 8268.554502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.317 6.317 3 C 0.313 3.687 4 N -0.560 5.560 5 C 0.135 3.865 6 C -0.203 4.203 7 C -0.028 4.028 8 C -0.182 4.182 9 C 0.173 3.827 10 N -1.114 6.114 11 S 2.798 3.202 12 O -1.004 7.004 13 O -1.019 7.019 14 N -0.996 5.996 15 C 0.102 3.898 16 C 0.275 3.725 17 H 0.022 0.978 18 C -0.131 4.131 19 C -0.539 4.539 20 H 0.057 0.943 21 C 0.018 3.982 22 N -0.914 5.914 23 Si 0.955 3.045 24 H -0.266 1.266 25 H -0.282 1.282 26 H -0.280 1.280 27 H 0.056 0.944 28 H 0.107 0.893 29 H 0.063 0.937 30 H 0.190 0.810 31 H 0.173 0.827 32 H 0.165 0.835 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.416 0.584 36 H 0.042 0.958 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.034 0.966 40 H 0.065 0.935 41 H 0.042 0.958 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.056 20.121 9.270 22.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.224 6.224 3 C 0.135 3.865 4 N -0.284 5.284 5 C -0.021 4.021 6 C -0.223 4.223 7 C -0.054 4.054 8 C -0.187 4.187 9 C 0.047 3.953 10 N -0.875 5.875 11 S 2.807 3.193 12 O -0.988 6.988 13 O -1.003 7.003 14 N -0.838 5.838 15 C -0.044 4.044 16 C 0.170 3.830 17 H 0.040 0.960 18 C -0.191 4.191 19 C -0.579 4.579 20 H 0.075 0.925 21 C -0.182 4.182 22 N -0.553 5.553 23 Si 0.781 3.219 24 H -0.191 1.191 25 H -0.207 1.207 26 H -0.205 1.205 27 H 0.075 0.925 28 H 0.125 0.875 29 H 0.082 0.918 30 H 0.206 0.794 31 H 0.191 0.809 32 H 0.182 0.818 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.250 0.750 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.053 0.947 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.135 19.667 8.750 21.752 hybrid contribution 0.195 -0.949 -0.457 1.071 sum -2.939 18.718 8.292 20.683 Atomic orbital electron populations 1.22974 0.76263 1.04003 1.02292 1.86320 1.23968 1.24776 1.87346 1.19959 0.89363 0.85135 0.92088 1.67416 1.41331 0.99440 1.20256 1.23094 0.94147 0.93668 0.91150 1.22369 0.94397 1.00844 1.04663 1.21814 1.02228 0.90138 0.91206 1.19886 0.90874 0.96853 1.11057 1.20021 1.00257 0.92676 0.82358 1.55857 1.54814 1.57482 1.19331 1.01180 0.73444 0.72519 0.72135 1.93510 1.42235 1.81235 1.81778 1.93549 1.86705 1.84026 1.36031 1.57548 1.61135 1.35609 1.29483 1.21378 0.98297 1.02056 0.82638 1.18369 0.86949 0.85701 0.91952 0.96009 1.21869 0.98572 0.99712 0.98944 1.21642 0.98701 0.94891 1.42647 0.92500 1.25638 0.95668 1.02121 0.94797 1.69976 1.11129 1.31165 1.43004 0.85660 0.78273 0.79304 0.78677 1.19068 1.20730 1.20524 0.92491 0.87506 0.91843 0.79353 0.80940 0.81775 0.90601 0.88319 0.75036 0.93886 0.90057 0.90437 0.94732 0.91658 0.93883 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.84 10.38 113.37 1.18 2.02 16 2 O -0.32 -8.57 9.73 -90.01 -0.88 -9.44 16 3 C 0.31 7.77 7.47 84.78 0.63 8.41 16 4 N -0.56 -12.31 9.22 -308.93 -2.85 -15.16 16 5 C 0.13 2.02 11.18 84.64 0.95 2.96 16 6 C -0.20 -2.51 10.11 22.37 0.23 -2.29 16 7 C -0.03 -0.45 9.81 22.45 0.22 -0.23 16 8 C -0.18 -4.05 5.31 -19.67 -0.10 -4.15 16 9 C 0.17 4.26 6.06 85.63 0.52 4.78 16 10 N -1.11 -33.70 6.05 -190.79 -1.15 -34.85 16 11 S 2.80 110.21 6.09 -56.49 -0.34 109.87 16 12 O -1.00 -40.13 16.68 -128.00 -2.14 -42.27 16 13 O -1.02 -49.47 16.70 -128.00 -2.14 -51.61 16 14 N -1.00 -41.32 3.12 -520.44 -1.62 -42.94 16 15 C 0.10 3.49 9.53 127.77 1.22 4.70 16 16 C 0.27 13.75 2.62 44.25 0.12 13.87 16 17 H 0.02 1.26 6.91 -2.39 -0.02 1.24 16 18 C -0.13 -6.00 8.95 71.98 0.64 -5.36 16 19 C -0.54 -29.62 8.37 25.60 0.21 -29.41 16 20 H 0.06 3.09 7.65 -2.91 -0.02 3.07 16 21 C 0.02 0.97 5.30 84.66 0.45 1.42 16 22 N -0.91 -51.94 11.32 21.45 0.24 -51.69 16 23 Si 0.96 43.74 29.54 68.60 2.03 45.77 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 27 H 0.06 1.19 8.10 -2.39 -0.02 1.17 16 28 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 30 H 0.19 1.48 8.06 -2.91 -0.02 1.46 16 31 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 32 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 33 H 0.08 1.91 7.87 -2.39 -0.02 1.89 16 34 H 0.10 2.12 7.64 -2.39 -0.02 2.10 16 35 H 0.42 12.14 8.64 -96.74 -0.84 11.31 16 36 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 2.19 7.79 -2.39 -0.02 2.18 16 38 H 0.08 2.56 6.43 -2.39 -0.02 2.54 16 39 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.06 3.35 6.07 -2.39 -0.01 3.33 16 41 H 0.04 1.82 6.66 -2.39 -0.02 1.81 16 42 H 0.26 14.29 8.31 -92.70 -0.77 13.51 16 Total: -1.00 -73.69 363.63 -2.38 -76.07 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.21 Total: 19.54 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 6.26 Total: -3.28 kcal Atomic # 7 Polarization: -139.26 SS G_CDS: -5.38 Total: -144.65 kcal Atomic # 8 Polarization: -98.17 SS G_CDS: -5.15 Total: -103.32 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: 110.21 SS G_CDS: -0.34 Total: 109.87 kcal Total: -73.69 -2.38 -76.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282916978.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.222 kcal (2) G-P(sol) polarization free energy of solvation -73.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds