Wall clock time and date at job start Tue Mar 31 2020 07:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35737 * 117.00096 * 2 1 4 4 C 1.39289 * 120.84598 * 0.02870 * 3 2 1 5 5 C 1.37946 * 119.09083 * 179.97438 * 4 3 2 6 6 N 1.31977 * 120.82653 * 0.02562 * 5 4 3 7 7 C 1.31945 * 121.86240 * 359.66174 * 6 5 4 8 8 C 1.37993 * 120.81810 * 0.63047 * 7 6 5 9 9 C 1.50707 * 120.44840 * 179.68083 * 8 7 6 10 10 N 1.46501 * 109.47168 * 259.72035 * 9 8 7 11 11 S 1.65598 * 120.00034 * 165.00185 * 10 9 8 12 12 O 1.42100 * 106.40183 * 311.46236 * 11 10 9 13 13 O 1.42101 * 106.40217 * 178.54484 * 11 10 9 14 14 N 1.65597 * 107.21541 * 65.00515 * 11 10 9 15 15 C 1.46503 * 119.99956 * 269.99520 * 14 11 10 16 16 C 1.46497 * 120.00227 * 89.99985 * 14 11 10 17 17 H 1.09003 * 109.46733 * 0.02562 * 16 14 11 18 18 C 1.53000 * 109.47145 * 119.99787 * 16 14 11 19 19 C 1.50694 * 109.47115 * 239.99861 * 16 14 11 20 20 H 1.08000 * 120.00563 * 359.97438 * 19 16 14 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 16 14 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 16 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 H 1.08992 * 109.47180 * 59.99530 * 1 2 3 28 28 H 1.09004 * 109.46978 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46987 * 299.99583 * 1 2 3 30 30 H 1.08003 * 120.45257 * 359.95144 * 4 3 2 31 31 H 1.08009 * 119.58770 * 179.97438 * 5 4 3 32 32 H 1.07999 * 119.58709 * 180.31412 * 7 6 5 33 33 H 1.09001 * 109.46602 * 139.72578 * 9 8 7 34 34 H 1.08992 * 109.47327 * 19.72406 * 9 8 7 35 35 H 0.96998 * 119.99681 * 345.00768 * 10 9 8 36 36 H 1.08994 * 109.47665 * 270.00896 * 15 14 11 37 37 H 1.09008 * 109.46786 * 30.00504 * 15 14 11 38 38 H 1.08997 * 109.47360 * 149.99945 * 15 14 11 39 39 H 1.08997 * 109.47359 * 180.02562 * 18 16 14 40 40 H 1.09007 * 109.47356 * 300.00099 * 18 16 14 41 41 H 1.09000 * 109.47156 * 59.99824 * 18 16 14 42 42 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3040 2.3887 0.0006 5 6 1.9676 3.5980 0.0011 6 7 3.2865 3.6457 0.0005 7 6 4.0231 2.5510 0.0061 8 6 3.4345 1.3029 -0.0003 9 6 4.2839 0.0580 -0.0011 10 7 4.3607 -0.4799 -1.3617 11 16 5.5085 -1.6117 -1.7410 12 8 6.7426 -1.1145 -1.2422 13 8 5.3018 -1.9512 -3.1053 14 7 5.1635 -2.9728 -0.8631 15 6 5.7424 -3.1502 0.4710 16 6 4.2796 -3.9995 -1.4204 17 1 3.9499 -3.6949 -2.4137 18 6 5.0368 -5.3254 -1.5193 19 6 3.0810 -4.1713 -0.5234 20 1 2.9871 -3.5755 0.3726 21 6 2.1045 -5.0898 -0.8459 22 7 2.2189 -5.8156 -1.9366 23 14 0.6190 -5.3031 0.2665 24 1 -0.2771 -6.3439 -0.2986 25 1 1.0692 -5.7182 1.6193 26 1 -0.1163 -4.0165 0.3625 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2244 2.3566 0.0003 31 1 1.4008 4.5174 0.0012 32 1 5.0999 2.6328 0.0105 33 1 3.8384 -0.6862 0.6591 34 1 5.2863 0.3018 0.3503 35 1 3.7394 -0.1729 -2.0403 36 1 6.6980 -3.6677 0.3866 37 1 5.8970 -2.1749 0.9326 38 1 5.0630 -3.7398 1.0865 39 1 4.3793 -6.0892 -1.9344 40 1 5.9038 -5.2012 -2.1682 41 1 5.3669 -5.6302 -0.5262 42 1 1.5322 -6.4620 -2.1633 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293129574.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:08 Heat of formation + Delta-G solvation = -73.215564 kcal Electronic energy + Delta-G solvation = -27436.333225 eV Core-core repulsion = 23544.083013 eV Total energy + Delta-G solvation = -3892.250212 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.82288 -38.27772 -36.67170 -36.13170 -35.40904 -35.21761 -32.58785 -31.40617 -31.29951 -29.06672 -27.69206 -25.95866 -25.44364 -25.16516 -23.02873 -22.17412 -20.76306 -18.85372 -18.46835 -17.32185 -17.15270 -16.79606 -16.36795 -16.10282 -15.79305 -15.20904 -15.06781 -14.80259 -14.37041 -14.22317 -13.77544 -13.48729 -13.32857 -13.22541 -13.08365 -12.69383 -12.23873 -11.97746 -11.78771 -11.73016 -11.61678 -11.50425 -11.35191 -11.21272 -11.13526 -10.95578 -10.88477 -10.44188 -10.20899 -10.06969 -9.73597 -9.37548 -9.31293 -9.06681 -8.89057 -8.47846 -7.94096 -6.08728 -4.16117 0.83517 1.17831 1.38033 3.04757 3.20813 3.28027 3.28669 3.47895 3.74303 4.19930 4.25960 4.34047 4.47890 4.62799 4.77250 4.98507 5.04095 5.05637 5.13623 5.21663 5.32729 5.47165 5.49247 5.59458 5.67352 5.82627 5.99552 6.13106 6.19076 6.36447 6.40552 6.68231 6.89339 6.89549 7.09831 7.13232 7.26296 7.54892 7.64486 7.79859 7.84826 8.06454 8.27458 8.86416 9.49065 10.96478 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.011130 B = 0.005579 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.006765 B = 5017.937185 C = 6925.367416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.288 6.288 3 C 0.186 3.814 4 C -0.268 4.268 5 C 0.136 3.864 6 N -0.512 5.512 7 C 0.148 3.852 8 C -0.180 4.180 9 C 0.178 3.822 10 N -1.121 6.121 11 S 2.783 3.217 12 O -0.999 6.999 13 O -0.981 6.981 14 N -0.989 5.989 15 C 0.106 3.894 16 C 0.269 3.731 17 H 0.058 0.942 18 C -0.145 4.145 19 C -0.519 4.519 20 H 0.063 0.937 21 C 0.064 3.936 22 N -0.888 5.888 23 Si 0.897 3.103 24 H -0.288 1.288 25 H -0.278 1.278 26 H -0.279 1.279 27 H 0.058 0.942 28 H 0.108 0.892 29 H 0.056 0.944 30 H 0.139 0.861 31 H 0.156 0.844 32 H 0.165 0.835 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.412 0.588 36 H 0.043 0.957 37 H 0.048 0.952 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.012 0.988 41 H 0.032 0.968 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.585 13.534 5.832 14.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.198 6.198 3 C 0.131 3.869 4 C -0.289 4.289 5 C -0.021 4.021 6 N -0.225 5.225 7 C -0.008 4.008 8 C -0.185 4.185 9 C 0.051 3.949 10 N -0.880 5.880 11 S 2.792 3.208 12 O -0.982 6.982 13 O -0.966 6.966 14 N -0.832 5.832 15 C -0.041 4.041 16 C 0.166 3.834 17 H 0.076 0.924 18 C -0.204 4.204 19 C -0.559 4.559 20 H 0.081 0.919 21 C -0.139 4.139 22 N -0.527 5.527 23 Si 0.725 3.275 24 H -0.214 1.214 25 H -0.204 1.204 26 H -0.205 1.205 27 H 0.076 0.924 28 H 0.127 0.873 29 H 0.074 0.926 30 H 0.157 0.843 31 H 0.173 0.827 32 H 0.182 0.818 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.245 0.755 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.031 0.969 41 H 0.051 0.949 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.340 13.993 5.259 15.008 hybrid contribution -2.371 -0.841 0.606 2.588 sum -3.711 13.152 5.866 14.871 Atomic orbital electron populations 1.23199 0.77678 1.05049 1.01081 1.86282 1.21823 1.25141 1.86536 1.19324 0.91996 0.85151 0.90474 1.22238 1.01629 0.93176 1.11847 1.22558 0.90367 0.96906 0.92243 1.67772 1.07041 1.31943 1.15715 1.22677 1.00460 0.86040 0.91655 1.20350 0.91251 0.97350 1.09514 1.19805 0.98774 0.92150 0.84190 1.56045 1.54149 1.59900 1.17868 1.01768 0.73190 0.72591 0.73227 1.93535 1.42303 1.80441 1.81946 1.93592 1.86298 1.83308 1.33365 1.57690 1.62006 1.35324 1.28171 1.21204 0.97927 1.00586 0.84364 1.18708 0.86461 0.83557 0.94699 0.92419 1.22055 0.98320 1.01251 0.98803 1.21329 1.04282 1.21180 1.09097 0.91908 1.24913 0.98119 0.95613 0.95236 1.69876 1.34532 1.24074 1.24168 0.86600 0.82525 0.77588 0.80785 1.21402 1.20355 1.20480 0.92368 0.87348 0.92585 0.84323 0.82665 0.81835 0.90195 0.89809 0.75539 0.93869 0.93285 0.90212 0.88957 0.96919 0.94892 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.84 101.05 0.99 1.25 16 2 O -0.29 -4.07 9.86 -18.92 -0.19 -4.25 16 3 C 0.19 2.38 6.70 -38.82 -0.26 2.12 16 4 C -0.27 -2.79 9.11 -39.30 -0.36 -3.14 16 5 C 0.14 1.40 11.17 -17.60 -0.20 1.20 16 6 N -0.51 -6.26 10.36 -13.33 -0.14 -6.40 16 7 C 0.15 1.77 10.82 -17.59 -0.19 1.58 16 8 C -0.18 -2.33 5.31 -104.34 -0.55 -2.89 16 9 C 0.18 2.49 6.10 -5.19 -0.03 2.46 16 10 N -1.12 -18.18 6.05 -11.65 -0.07 -18.25 16 11 S 2.78 54.41 6.09 -107.50 -0.66 53.76 16 12 O -1.00 -20.12 16.68 -57.17 -0.95 -21.07 16 13 O -0.98 -22.53 16.70 -57.17 -0.95 -23.49 16 14 N -0.99 -20.25 3.12 -115.85 -0.36 -20.61 16 15 C 0.11 1.85 9.28 59.85 0.56 2.40 16 16 C 0.27 6.50 2.62 -69.09 -0.18 6.32 16 17 H 0.06 1.56 6.91 -51.93 -0.36 1.20 16 18 C -0.14 -3.43 8.97 37.16 0.33 -3.10 16 19 C -0.52 -13.03 7.99 -34.44 -0.28 -13.31 16 20 H 0.06 1.53 7.33 -52.49 -0.38 1.15 16 21 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 22 N -0.89 -24.11 11.32 55.43 0.63 -23.48 16 23 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 24 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 27 H 0.06 0.51 7.71 -51.93 -0.40 0.11 16 28 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.06 0.46 7.71 -51.93 -0.40 0.06 16 30 H 0.14 1.09 6.47 -52.48 -0.34 0.76 16 31 H 0.16 1.11 8.06 -52.48 -0.42 0.68 16 32 H 0.16 1.64 8.04 -52.49 -0.42 1.21 16 33 H 0.08 1.17 7.92 -51.93 -0.41 0.76 16 34 H 0.08 1.05 7.62 -51.93 -0.40 0.66 16 35 H 0.41 6.40 8.64 -34.47 -0.30 6.10 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.73 7.79 -51.92 -0.40 0.32 16 38 H 0.08 1.41 7.02 -51.93 -0.36 1.05 16 39 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 40 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 42 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 361.97 15.07 5.45 5.45 Total: -1.00 -32.26 361.97 -8.24 -40.50 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -5.72 Total: 6.53 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -0.26 Total: -3.56 kcal Atomic # 7 Polarization: -68.80 SS G_CDS: 0.06 Total: -68.74 kcal Atomic # 8 Polarization: -46.72 SS G_CDS: -2.10 Total: -48.81 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 16 Polarization: 54.41 SS G_CDS: -0.66 Total: 53.76 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.26 -8.24 -40.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293129574.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.718 kcal (2) G-P(sol) polarization free energy of solvation -32.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds