Wall clock time and date at job start Tue Mar 31 2020 07:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35739 * 116.99932 * 2 1 4 4 C 1.39291 * 120.84511 * 0.02868 * 3 2 1 5 5 C 1.37950 * 119.08957 * 179.97438 * 4 3 2 6 6 N 1.31979 * 120.82869 * 0.02562 * 5 4 3 7 7 C 1.31951 * 121.85845 * 359.65973 * 6 5 4 8 8 C 1.37994 * 120.82177 * 0.63118 * 7 6 5 9 9 C 1.50696 * 120.45267 * 179.68093 * 8 7 6 10 10 N 1.46504 * 109.46955 * 259.72256 * 9 8 7 11 11 S 1.65603 * 119.99815 * 165.00318 * 10 9 8 12 12 O 1.42105 * 106.40081 * 311.45945 * 11 10 9 13 13 O 1.42100 * 106.39968 * 178.53991 * 11 10 9 14 14 N 1.65603 * 107.21853 * 64.99851 * 11 10 9 15 15 C 1.46503 * 119.99904 * 269.99966 * 14 11 10 16 16 C 1.46496 * 119.99847 * 90.00274 * 14 11 10 17 17 H 1.09001 * 109.47459 * 359.97438 * 16 14 11 18 18 C 1.53006 * 109.46995 * 240.00000 * 16 14 11 19 19 C 1.50697 * 109.47428 * 119.99747 * 16 14 11 20 20 H 1.08001 * 119.99890 * 0.02562 * 19 16 14 21 21 C 1.37876 * 120.00428 * 179.97438 * 19 16 14 22 22 N 1.31510 * 119.99600 * 0.02562 * 21 19 16 23 23 Si 1.86805 * 120.00227 * 180.02562 * 21 19 16 24 24 H 1.48499 * 109.46821 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46996 * 120.00312 * 23 21 19 26 26 H 1.48495 * 109.46665 * 239.99993 * 23 21 19 27 27 H 1.08999 * 109.47127 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46715 * 299.99840 * 1 2 3 29 29 H 1.09001 * 109.47202 * 59.99660 * 1 2 3 30 30 H 1.07999 * 120.45766 * 359.95345 * 4 3 2 31 31 H 1.08005 * 119.58685 * 179.97438 * 5 4 3 32 32 H 1.07996 * 119.58846 * 180.31514 * 7 6 5 33 33 H 1.09004 * 109.46942 * 139.72285 * 9 8 7 34 34 H 1.09001 * 109.47217 * 19.72464 * 9 8 7 35 35 H 0.96992 * 120.00037 * 345.00198 * 10 9 8 36 36 H 1.08997 * 109.46807 * 269.99911 * 15 14 11 37 37 H 1.08998 * 109.47196 * 30.00196 * 15 14 11 38 38 H 1.09000 * 109.46808 * 150.00575 * 15 14 11 39 39 H 1.09001 * 109.47002 * 299.99701 * 18 16 14 40 40 H 1.08993 * 109.46955 * 60.00138 * 18 16 14 41 41 H 1.09000 * 109.47050 * 179.97438 * 18 16 14 42 42 H 0.97006 * 120.00212 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3039 2.3887 0.0006 5 6 1.9676 3.5981 0.0011 6 7 3.2865 3.6458 0.0005 7 6 4.0231 2.5511 0.0061 8 6 3.4346 1.3029 -0.0002 9 6 4.2839 0.0581 -0.0010 10 7 4.3607 -0.4798 -1.3616 11 16 5.5085 -1.6117 -1.7409 12 8 6.7427 -1.1144 -1.2420 13 8 5.3018 -1.9511 -3.1052 14 7 5.1636 -2.9728 -0.8628 15 6 5.7425 -3.1500 0.4713 16 6 4.2797 -3.9995 -1.4202 17 1 3.9493 -3.6946 -2.4131 18 6 3.0627 -4.1739 -0.5094 19 6 5.0255 -5.3054 -1.5176 20 1 6.0548 -5.3647 -1.1960 21 6 4.3935 -6.4248 -2.0162 22 7 3.1399 -6.3526 -2.4072 23 14 5.3177 -8.0437 -2.1362 24 1 6.7035 -7.8608 -1.6347 25 1 4.6263 -9.0704 -1.3158 26 1 5.3578 -8.4868 -3.5529 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 0.2244 2.3567 0.0003 31 1 1.4007 4.5174 0.0012 32 1 5.0999 2.6329 0.0106 33 1 3.8384 -0.6861 0.6592 34 1 5.2864 0.3020 0.3505 35 1 3.7394 -0.1729 -2.0402 36 1 6.6980 -3.6676 0.3868 37 1 5.8970 -2.1748 0.9328 38 1 5.0630 -3.7397 1.0867 39 1 3.3928 -4.4787 0.4837 40 1 2.5233 -3.2294 -0.4391 41 1 2.4048 -4.9375 -0.9243 42 1 2.6953 -7.1400 -2.7584 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293129578.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:12 Heat of formation + Delta-G solvation = -71.605862 kcal Electronic energy + Delta-G solvation = -27131.255872 eV Core-core repulsion = 23239.075461 eV Total energy + Delta-G solvation = -3892.180410 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.94002 -38.41607 -36.65608 -36.15080 -35.50611 -35.18555 -32.55748 -31.51990 -31.39563 -29.06447 -27.84616 -26.04999 -25.53612 -25.10143 -23.14496 -22.28277 -20.76212 -18.81251 -18.59789 -17.41993 -17.24596 -16.81468 -16.54982 -16.12743 -15.75349 -15.24457 -15.16312 -14.85951 -14.46094 -14.26717 -13.86985 -13.50751 -13.46922 -13.26505 -13.09699 -12.76226 -12.36985 -12.00668 -11.85904 -11.71384 -11.69165 -11.46532 -11.32152 -11.24662 -11.16858 -10.96350 -10.77586 -10.43207 -10.24424 -10.01107 -9.82282 -9.43664 -9.27580 -9.18481 -9.01591 -8.43991 -7.93611 -6.05595 -4.11592 0.74434 1.07389 1.32956 2.88896 3.28710 3.36886 3.40783 3.44271 3.69605 4.15184 4.19254 4.37515 4.42051 4.52423 4.66953 4.85446 4.88931 5.02099 5.05385 5.20939 5.26144 5.30729 5.38690 5.51975 5.60937 5.71755 5.86282 6.03512 6.16347 6.30381 6.39706 6.66088 6.82251 6.83578 6.94177 7.05935 7.17984 7.52086 7.67098 7.76151 7.81986 8.06975 8.30566 8.91077 9.54074 11.00090 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018541 B = 0.003802 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.814434 B = 7362.342077 C = 8301.198174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.295 6.295 3 C 0.184 3.816 4 C -0.267 4.267 5 C 0.137 3.863 6 N -0.511 5.511 7 C 0.149 3.851 8 C -0.180 4.180 9 C 0.177 3.823 10 N -1.127 6.127 11 S 2.780 3.220 12 O -0.996 6.996 13 O -0.974 6.974 14 N -0.989 5.989 15 C 0.109 3.891 16 C 0.269 3.731 17 H 0.058 0.942 18 C -0.147 4.147 19 C -0.518 4.518 20 H 0.063 0.937 21 C 0.063 3.937 22 N -0.891 5.891 23 Si 0.897 3.103 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.283 1.283 27 H 0.108 0.892 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.140 0.860 31 H 0.157 0.843 32 H 0.166 0.834 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.411 0.589 36 H 0.049 0.951 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.032 0.968 40 H 0.013 0.987 41 H 0.091 0.909 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.743 16.116 7.978 19.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.205 6.205 3 C 0.129 3.871 4 C -0.287 4.287 5 C -0.020 4.020 6 N -0.223 5.223 7 C -0.007 4.007 8 C -0.185 4.185 9 C 0.050 3.950 10 N -0.885 5.885 11 S 2.789 3.211 12 O -0.980 6.980 13 O -0.958 6.958 14 N -0.832 5.832 15 C -0.038 4.038 16 C 0.166 3.834 17 H 0.076 0.924 18 C -0.206 4.206 19 C -0.557 4.557 20 H 0.081 0.919 21 C -0.139 4.139 22 N -0.530 5.530 23 Si 0.725 3.275 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.209 1.209 27 H 0.126 0.874 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.157 0.843 31 H 0.174 0.826 32 H 0.183 0.817 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.244 0.756 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.051 0.949 40 H 0.033 0.967 41 H 0.109 0.891 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.538 16.618 7.438 19.030 hybrid contribution -1.056 -1.579 -0.089 1.902 sum -6.594 15.039 7.349 17.990 Atomic orbital electron populations 1.23198 0.77595 1.04940 1.01325 1.86212 1.21917 1.25511 1.86869 1.19277 0.91921 0.85013 0.90872 1.22236 1.01629 0.93152 1.11730 1.22586 0.90366 0.96960 0.92090 1.67789 1.07047 1.31940 1.15488 1.22710 1.00554 0.86007 0.91443 1.20355 0.91202 0.97396 1.09497 1.19809 0.98990 0.92067 0.84137 1.56245 1.54424 1.60026 1.17823 1.01933 0.73300 0.72514 0.73375 1.93534 1.42052 1.80501 1.81873 1.93613 1.86045 1.83104 1.33043 1.57672 1.62371 1.34738 1.28393 1.21161 0.98666 1.00030 0.83896 1.18716 0.86331 0.85482 0.92891 0.92416 1.22097 0.99652 0.99619 0.99256 1.21394 0.98558 0.93611 1.42180 0.91906 1.24904 0.94977 0.98995 0.95048 1.69873 1.10601 1.29727 1.42773 0.86451 0.79998 0.83257 0.77765 1.19724 1.21052 1.20936 0.87371 0.92462 0.92315 0.84263 0.82576 0.81735 0.90478 0.89605 0.75621 0.93254 0.93410 0.90984 0.94910 0.96745 0.89067 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.84 101.05 0.99 1.18 16 2 O -0.30 -3.43 9.86 -18.92 -0.19 -3.61 16 3 C 0.18 2.06 6.70 -38.82 -0.26 1.80 16 4 C -0.27 -2.40 9.11 -39.30 -0.36 -2.76 16 5 C 0.14 1.26 11.17 -17.59 -0.20 1.06 16 6 N -0.51 -5.78 10.36 -13.33 -0.14 -5.92 16 7 C 0.15 1.65 10.82 -17.59 -0.19 1.46 16 8 C -0.18 -2.11 5.31 -104.34 -0.55 -2.66 16 9 C 0.18 2.26 6.10 -5.19 -0.03 2.23 16 10 N -1.13 -17.09 6.05 -11.65 -0.07 -17.16 16 11 S 2.78 54.46 6.09 -107.50 -0.66 53.80 16 12 O -1.00 -20.41 16.68 -57.17 -0.95 -21.36 16 13 O -0.97 -22.90 16.70 -57.17 -0.95 -23.86 16 14 N -0.99 -20.36 3.12 -115.85 -0.36 -20.72 16 15 C 0.11 1.91 9.53 59.85 0.57 2.48 16 16 C 0.27 6.55 2.62 -69.08 -0.18 6.37 16 17 H 0.06 1.57 6.91 -51.93 -0.36 1.21 16 18 C -0.15 -3.28 8.95 37.16 0.33 -2.95 16 19 C -0.52 -13.95 8.37 -34.44 -0.29 -14.24 16 20 H 0.06 1.69 7.65 -52.49 -0.40 1.29 16 21 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 22 N -0.89 -24.71 11.32 55.43 0.63 -24.08 16 23 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.34 7.71 -51.93 -0.40 -0.06 16 29 H 0.06 0.38 7.71 -51.93 -0.40 -0.02 16 30 H 0.14 0.89 6.47 -52.49 -0.34 0.55 16 31 H 0.16 0.96 8.06 -52.48 -0.42 0.54 16 32 H 0.17 1.53 8.04 -52.49 -0.42 1.10 16 33 H 0.08 0.98 7.92 -51.93 -0.41 0.57 16 34 H 0.09 1.01 7.62 -51.93 -0.40 0.61 16 35 H 0.41 5.87 8.64 -34.47 -0.30 5.57 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.69 7.79 -51.93 -0.40 0.28 16 38 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 39 H 0.03 0.69 6.66 -51.93 -0.35 0.34 16 40 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 42 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 361.29 15.07 5.44 5.44 Total: -1.00 -33.96 361.29 -8.18 -42.14 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -5.65 Total: 3.61 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -0.26 Total: -4.42 kcal Atomic # 7 Polarization: -67.95 SS G_CDS: 0.06 Total: -67.89 kcal Atomic # 8 Polarization: -46.74 SS G_CDS: -2.10 Total: -48.83 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 54.46 SS G_CDS: -0.66 Total: 53.80 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.96 -8.18 -42.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293129578.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.463 kcal (2) G-P(sol) polarization free energy of solvation -33.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds