Wall clock time and date at job start Tue Mar 31 2020 06:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47362 * 270.82459 * 3 2 1 5 5 C 1.37098 * 119.99853 * 264.23700 * 4 3 2 6 6 H 1.08000 * 120.00021 * 197.71865 * 5 4 3 7 7 C 1.38956 * 120.00041 * 17.71855 * 5 4 3 8 8 N 1.31407 * 120.00059 * 21.40103 * 7 5 4 9 9 Si 1.86802 * 119.99632 * 201.40433 * 7 5 4 10 10 H 1.48498 * 109.47391 * 90.00081 * 9 7 5 11 11 H 1.48500 * 109.46859 * 210.00221 * 9 7 5 12 12 H 1.48506 * 109.47185 * 329.99686 * 9 7 5 13 13 C 1.34773 * 119.99961 * 84.22834 * 4 3 2 14 14 O 1.21295 * 120.00066 * 180.02562 * 13 4 3 15 15 C 1.50698 * 120.00195 * 0.02562 * 13 4 3 16 16 C 1.52994 * 109.47158 * 179.97438 * 15 13 4 17 17 C 1.53008 * 109.47183 * 180.02562 * 16 15 13 18 18 S 1.81394 * 109.47099 * 179.97438 * 17 16 15 19 19 O 1.42093 * 110.54467 * 291.62040 * 18 17 16 20 20 O 1.42104 * 110.54430 * 68.37545 * 18 17 16 21 21 N 1.65604 * 104.44730 * 179.97438 * 18 17 16 22 22 C 1.47022 * 125.64973 * 269.68746 * 21 18 17 23 23 C 1.54314 * 107.27557 * 180.97035 * 22 21 18 24 24 C 1.55154 * 102.86438 * 22.52618 * 23 22 21 25 25 C 1.47426 * 125.64534 * 90.00313 * 21 18 17 26 26 H 1.08999 * 109.47060 * 150.82670 * 3 2 1 27 27 H 1.08994 * 109.47379 * 30.82445 * 3 2 1 28 28 H 0.97003 * 119.99989 * 179.97438 * 8 7 5 29 29 H 1.08994 * 109.47235 * 59.99126 * 15 13 4 30 30 H 1.09001 * 109.46465 * 299.99604 * 15 13 4 31 31 H 1.09001 * 109.47125 * 299.99218 * 16 15 13 32 32 H 1.08994 * 109.47746 * 59.99457 * 16 15 13 33 33 H 1.09001 * 109.46361 * 299.99574 * 17 16 15 34 34 H 1.08994 * 109.47314 * 59.99081 * 17 16 15 35 35 H 1.08991 * 109.88784 * 300.51808 * 22 21 18 36 36 H 1.09004 * 109.88047 * 61.68217 * 22 21 18 37 37 H 1.09005 * 110.92397 * 264.11455 * 23 22 21 38 38 H 1.09001 * 110.59160 * 140.79243 * 23 22 21 39 39 H 1.09000 * 111.00561 * 206.22921 * 24 23 22 40 40 H 1.08998 * 110.99887 * 82.37795 * 24 23 22 41 41 H 1.09002 * 110.36490 * 274.66950 * 25 21 18 42 42 H 1.08994 * 110.37201 * 36.88412 * 25 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0964 -0.0190 1.3811 5 6 3.4367 1.1536 2.0045 6 1 4.0531 1.1347 2.8912 7 6 2.9887 2.3666 1.4957 8 7 1.9354 2.4009 0.7108 9 14 3.8840 3.9482 1.9273 10 1 4.9486 4.2041 0.9241 11 1 2.9207 5.0784 1.9260 12 1 4.4944 3.8196 3.2750 13 6 3.2109 -1.1898 2.0388 14 8 3.6148 -1.2060 3.1824 15 6 2.8371 -2.4788 1.3534 16 6 3.0593 -3.6496 2.3128 17 6 2.6804 -4.9584 1.6166 18 16 2.9445 -6.3467 2.7539 19 8 4.3316 -6.5329 2.9997 20 8 2.0107 -6.2993 3.8240 21 7 2.5002 -7.6838 1.8838 22 6 1.1512 -8.2664 1.8371 23 6 1.2195 -9.5078 0.9231 24 6 2.7236 -9.8862 0.9661 25 6 3.3935 -8.4910 1.0330 26 1 2.9709 0.8981 -0.5009 27 1 2.9717 -0.8816 -0.5265 28 1 1.6224 3.2477 0.3558 29 1 3.4578 -2.6125 0.4675 30 1 1.7879 -2.4431 1.0599 31 1 4.1085 -3.6851 2.6058 32 1 2.4389 -3.5161 3.1989 33 1 1.6312 -4.9232 1.3232 34 1 3.3011 -5.0917 0.7307 35 1 0.8386 -8.5586 2.8395 36 1 0.4489 -7.5424 1.4239 37 1 0.9131 -9.2602 -0.0933 38 1 0.6071 -10.3146 1.3258 39 1 3.0186 -10.4184 0.0618 40 1 2.9534 -10.4729 1.8555 41 1 3.4634 -8.0557 0.0361 42 1 4.3829 -8.5647 1.4842 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299662797.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:56 Heat of formation + Delta-G solvation = -71.582944 kcal Electronic energy + Delta-G solvation = -25889.634388 eV Core-core repulsion = 21997.454972 eV Total energy + Delta-G solvation = -3892.179417 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 3.44 seconds Orbital eigenvalues (eV) -38.99309 -38.63377 -37.17791 -36.02228 -35.94974 -34.69215 -34.05812 -31.89458 -31.26886 -29.32822 -28.45835 -27.39612 -24.81506 -23.03483 -22.01022 -21.57395 -19.22387 -19.03642 -18.00613 -17.79180 -17.02666 -16.62604 -16.32073 -16.11164 -15.77966 -15.07747 -14.67762 -14.24927 -14.15193 -14.04546 -13.65685 -13.55089 -13.06362 -13.04252 -12.97157 -12.58684 -12.32958 -12.18659 -12.10236 -11.89886 -11.83894 -11.69223 -11.65835 -11.62125 -11.50992 -11.26941 -11.19810 -11.09533 -10.80143 -10.70226 -10.57290 -10.41630 -10.31321 -9.30484 -9.26087 -8.64614 -8.09116 -6.54324 -4.03639 0.09983 2.50167 3.07800 3.20609 3.24800 3.49669 3.70829 3.75887 3.87836 3.91975 4.07892 4.14110 4.36424 4.45967 4.55937 4.75448 4.82547 4.90686 4.92106 5.09656 5.13335 5.15769 5.19317 5.37047 5.43507 5.46096 5.49698 5.55860 5.59242 5.64464 5.73956 5.82942 5.87137 6.06164 6.10067 6.20253 6.27148 6.45489 7.44192 7.85620 8.24088 8.67691 8.96291 9.15426 9.68726 10.51923 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.024583 B = 0.002599 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.707671 B =10769.508841 C =11379.286854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.245 3.755 3 C 0.221 3.779 4 N -0.444 5.444 5 C -0.314 4.314 6 H 0.109 0.891 7 C 0.032 3.968 8 N -0.878 5.878 9 Si 0.928 3.072 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.453 3.547 14 O -0.572 6.572 15 C -0.127 4.127 16 C -0.093 4.093 17 C -0.624 4.624 18 S 2.624 3.376 19 O -0.951 6.951 20 O -0.950 6.950 21 N -1.017 6.017 22 C 0.117 3.883 23 C -0.130 4.130 24 C -0.130 4.130 25 C 0.113 3.887 26 H 0.128 0.872 27 H 0.084 0.916 28 H 0.273 0.727 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.826 -21.253 -7.165 22.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.073 4.073 3 C 0.093 3.907 4 N -0.164 5.164 5 C -0.441 4.441 6 H 0.127 0.873 7 C -0.172 4.172 8 N -0.517 5.517 9 Si 0.755 3.245 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.241 3.759 14 O -0.455 6.455 15 C -0.169 4.169 16 C -0.132 4.132 17 C -0.754 4.754 18 S 2.720 3.280 19 O -0.941 6.941 20 O -0.941 6.941 21 N -0.856 5.856 22 C -0.008 4.008 23 C -0.168 4.168 24 C -0.169 4.169 25 C -0.013 4.013 26 H 0.146 0.854 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.589 -21.033 -5.734 21.809 hybrid contribution 0.296 1.364 -0.709 1.565 sum 0.885 -19.669 -6.442 20.716 Atomic orbital electron populations 1.80901 1.13594 1.12248 1.08490 1.29331 0.95389 0.90141 0.92467 1.18749 0.81600 1.03833 0.86527 1.43663 1.56573 1.06213 1.09951 1.19756 1.30022 0.81536 1.12825 0.87286 1.25287 0.94969 0.99717 0.97239 1.69855 1.19832 1.27877 1.34110 0.85879 0.78985 0.80330 0.79312 1.20129 1.21125 1.19300 1.20109 0.84009 0.84845 0.86923 1.90562 1.50183 1.86774 1.17937 1.21555 1.02856 0.93349 0.99146 1.21017 1.03836 0.89755 0.98638 1.30666 1.11619 1.16217 1.16924 1.04693 0.74134 0.74288 0.74923 1.93584 1.32441 1.84488 1.83627 1.93594 1.64437 1.86010 1.50024 1.58784 1.17861 1.43700 1.65220 1.21725 0.82934 0.95459 1.00673 1.22641 0.96976 0.97117 1.00108 1.22762 0.94997 0.96241 1.02882 1.22066 0.94116 0.90793 0.94280 0.85445 0.89820 0.91604 0.89541 0.89939 0.89522 0.89687 0.85066 0.84971 0.90889 0.91586 0.90520 0.90150 0.89947 0.90551 0.91508 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.94 18.54 42.15 0.78 -10.16 16 2 C 0.25 5.24 12.95 -20.76 -0.27 4.98 16 3 C 0.22 4.20 4.91 -6.83 -0.03 4.16 16 4 N -0.44 -10.13 2.60 -117.93 -0.31 -10.43 16 5 C -0.31 -8.01 9.32 -14.93 -0.14 -8.15 16 6 H 0.11 2.95 7.39 -52.49 -0.39 2.57 16 7 C 0.03 0.77 4.87 -17.47 -0.08 0.68 16 8 N -0.88 -21.88 9.48 55.50 0.53 -21.35 16 9 Si 0.93 19.51 29.60 -169.99 -5.03 14.48 16 10 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 11 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 12 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 13 C 0.45 10.00 7.57 -10.99 -0.08 9.91 16 14 O -0.57 -14.77 15.63 5.54 0.09 -14.68 16 15 C -0.13 -2.05 4.30 -27.89 -0.12 -2.17 16 16 C -0.09 -1.40 4.51 -26.73 -0.12 -1.52 16 17 C -0.62 -6.57 6.18 37.16 0.23 -6.34 16 18 S 2.62 32.06 5.65 -107.50 -0.61 31.45 16 19 O -0.95 -14.28 17.28 -57.54 -0.99 -15.27 16 20 O -0.95 -14.88 17.60 -57.54 -1.01 -15.90 16 21 N -1.02 -9.37 3.62 -111.43 -0.40 -9.77 16 22 C 0.12 0.90 6.89 -3.07 -0.02 0.88 16 23 C -0.13 -0.68 6.95 -24.90 -0.17 -0.85 16 24 C -0.13 -0.70 7.08 -24.58 -0.17 -0.87 16 25 C 0.11 0.81 7.08 -2.53 -0.02 0.79 16 26 H 0.13 2.50 6.46 -51.93 -0.34 2.16 16 27 H 0.08 1.17 6.68 -51.93 -0.35 0.82 16 28 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 29 H 0.09 1.09 7.41 -51.93 -0.39 0.70 16 30 H 0.08 1.28 7.51 -51.93 -0.39 0.89 16 31 H 0.09 1.33 8.10 -51.93 -0.42 0.91 16 32 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 33 H 0.13 1.15 8.14 -51.92 -0.42 0.73 16 34 H 0.13 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 0.66 7.66 -51.93 -0.40 0.26 16 LS Contribution 364.83 15.07 5.50 5.50 Total: -1.00 -35.64 364.83 -8.50 -44.13 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.02 Total: 0.50 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -1.01 Total: 1.51 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.60 Total: -51.72 kcal Atomic # 8 Polarization: -43.93 SS G_CDS: -1.92 Total: -45.85 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Atomic # 16 Polarization: 32.06 SS G_CDS: -0.61 Total: 31.45 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.64 -8.50 -44.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299662797.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.452 kcal (2) G-P(sol) polarization free energy of solvation -35.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.44 seconds