Wall clock time and date at job start Tue Mar 31 2020 07:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47599 * 2 1 4 4 C 1.50699 * 109.47299 * 120.00419 * 2 1 3 5 5 H 1.07998 * 120.00161 * 119.99453 * 4 2 1 6 6 C 1.37878 * 119.99733 * 299.99707 * 4 2 1 7 7 N 1.31515 * 119.99761 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 119.99831 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47286 * 90.00369 * 8 6 4 10 10 H 1.48500 * 109.46944 * 210.00052 * 8 6 4 11 11 H 1.48493 * 109.47337 * 329.99815 * 8 6 4 12 12 N 1.46507 * 109.46830 * 239.99946 * 2 1 3 13 13 S 1.65600 * 119.99662 * 95.00134 * 12 2 1 14 14 O 1.42093 * 106.40565 * 311.46060 * 13 12 2 15 15 O 1.42106 * 106.39983 * 178.53876 * 13 12 2 16 16 C 1.76198 * 107.21743 * 65.00372 * 13 12 2 17 17 C 1.39873 * 126.03692 * 269.99653 * 16 13 12 18 18 N 1.30846 * 108.20187 * 179.74476 * 17 16 13 19 19 N 1.40090 * 108.20009 * 0.40121 * 18 17 16 20 20 C 1.46502 * 126.03208 * 179.85614 * 19 18 17 21 21 C 1.53177 * 109.54366 * 264.69248 * 20 19 18 22 22 C 1.53098 * 109.21356 * 183.18424 * 21 20 19 23 23 O 1.42899 * 109.40993 * 57.57693 * 22 21 20 24 24 C 1.42898 * 114.10053 * 298.83671 * 23 22 21 25 25 C 1.53097 * 109.41405 * 61.16391 * 24 23 22 26 26 C 1.34942 * 107.92803 * 359.59444 * 19 18 17 27 27 H 1.09006 * 109.46604 * 300.00032 * 1 2 3 28 28 H 1.09000 * 109.47272 * 59.99692 * 1 2 3 29 29 H 1.08997 * 109.47599 * 179.97438 * 1 2 3 30 30 H 0.96998 * 119.99585 * 179.97438 * 7 6 4 31 31 H 0.97000 * 120.00440 * 275.00318 * 12 2 1 32 32 H 1.08001 * 125.90000 * 359.97438 * 17 16 13 33 33 H 1.09005 * 109.61268 * 24.91256 * 20 19 18 34 34 H 1.09002 * 109.52487 * 63.24635 * 21 20 19 35 35 H 1.09004 * 109.52023 * 303.12255 * 21 20 19 36 36 H 1.08999 * 109.47354 * 177.55660 * 22 21 20 37 37 H 1.08999 * 109.48099 * 297.59428 * 22 21 20 38 38 H 1.09007 * 109.48578 * 181.14563 * 24 23 22 39 39 H 1.09003 * 109.48319 * 301.17106 * 24 23 22 40 40 H 1.09002 * 109.52138 * 62.29619 * 25 24 23 41 41 H 1.09005 * 109.52063 * 182.42027 * 25 24 23 42 42 H 1.08000 * 126.12425 * 180.22194 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8598 3.5564 8 14 0.6260 1.2798 2.6541 9 1 -0.8019 0.8745 2.6993 10 1 0.9774 1.9952 3.9070 11 1 0.8493 2.1773 1.4923 12 7 2.0183 -0.6907 -1.1962 13 16 2.4121 0.1772 -2.5505 14 8 1.3247 1.0593 -2.7922 15 8 2.8775 -0.7635 -3.5086 16 6 3.7928 1.1908 -2.1372 17 6 3.7349 2.4891 -1.6200 18 7 4.9598 2.9114 -1.4375 19 7 5.8372 1.8969 -1.8422 20 6 7.3005 1.9585 -1.8074 21 6 7.8276 2.3956 -3.1776 22 6 9.3584 2.3808 -3.1567 23 8 9.8159 1.0721 -2.8100 24 6 9.3944 0.6299 -1.5182 25 6 7.8651 0.5744 -1.4732 26 6 5.0964 0.8509 -2.2641 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.9033 -0.5281 4.4374 31 1 2.1109 -1.6562 -1.1950 32 1 2.8346 3.0455 -1.4046 33 1 7.6187 2.6741 -1.0491 34 1 7.4761 3.4035 -3.3986 35 1 7.4670 1.7081 -3.9428 36 1 9.7379 2.6492 -4.1426 37 1 9.7189 3.0989 -2.4202 38 1 9.8000 -0.3630 -1.3236 39 1 9.7555 1.3250 -0.7602 40 1 7.5053 -0.1507 -2.2033 41 1 7.5405 0.2786 -0.4756 42 1 5.4760 -0.0890 -2.6367 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331260035.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:27 Heat of formation + Delta-G solvation = -40.816848 kcal Electronic energy + Delta-G solvation = -26913.839811 eV Core-core repulsion = 23022.994513 eV Total energy + Delta-G solvation = -3890.845299 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.45045 -39.52896 -36.73117 -35.64822 -35.32108 -35.07703 -32.22769 -31.70155 -30.67491 -30.29133 -29.16971 -25.40311 -25.11722 -24.15329 -22.35445 -21.46864 -21.00591 -20.14046 -19.01460 -18.11042 -17.38143 -16.56999 -16.52668 -16.14425 -15.68127 -15.43685 -15.35826 -15.08373 -14.89227 -14.63263 -13.88506 -13.81743 -13.56241 -13.07977 -13.00005 -12.84675 -12.40203 -12.19662 -12.12550 -11.87189 -11.83626 -11.69154 -11.51359 -11.49726 -11.34124 -11.21195 -10.93379 -10.68148 -10.48569 -10.20048 -10.15898 -9.58143 -9.54898 -9.35589 -9.12757 -8.83104 -8.47847 -6.21184 -4.22810 1.02811 1.63595 2.24239 2.46066 3.21736 3.32301 3.33331 3.39757 3.74385 3.96281 4.17181 4.28703 4.31331 4.39036 4.44816 4.50324 4.65095 4.73270 4.87734 4.95702 5.11044 5.11847 5.15693 5.21642 5.25939 5.43785 5.52450 5.57046 5.67560 5.70988 6.03662 6.25686 6.47285 6.53755 6.62967 6.68848 6.78144 6.99270 7.25838 7.42341 7.49706 7.88676 8.37470 8.80688 9.39018 10.91273 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.013851 B = 0.004084 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.989729 B = 6853.725875 C = 7792.204576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.249 3.751 3 H 0.039 0.961 4 C -0.526 4.526 5 H 0.082 0.918 6 C 0.075 3.925 7 N -0.894 5.894 8 Si 0.881 3.119 9 H -0.274 1.274 10 H -0.295 1.295 11 H -0.263 1.263 12 N -1.094 6.094 13 S 2.721 3.279 14 O -0.966 6.966 15 O -0.984 6.984 16 C -0.803 4.803 17 C 0.138 3.862 18 N -0.295 5.295 19 N -0.358 5.358 20 C 0.156 3.844 21 C -0.169 4.169 22 C 0.066 3.934 23 O -0.380 6.380 24 C 0.068 3.932 25 C -0.174 4.174 26 C 0.179 3.821 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.266 0.734 31 H 0.413 0.587 32 H 0.196 0.804 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.057 0.943 38 H 0.107 0.893 39 H 0.058 0.942 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.840 5.259 -11.281 17.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.143 3.857 3 H 0.057 0.943 4 C -0.565 4.565 5 H 0.100 0.900 6 C -0.128 4.128 7 N -0.531 5.531 8 Si 0.711 3.289 9 H -0.201 1.201 10 H -0.223 1.223 11 H -0.187 1.187 12 N -0.854 5.854 13 S 2.808 3.192 14 O -0.956 6.956 15 O -0.974 6.974 16 C -0.901 4.901 17 C -0.051 4.051 18 N -0.113 5.113 19 N -0.135 5.135 20 C 0.054 3.946 21 C -0.208 4.208 22 C -0.011 4.011 23 O -0.298 6.298 24 C -0.010 4.010 25 C -0.213 4.213 26 C 0.026 3.974 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.247 0.753 32 H 0.213 0.787 33 H 0.126 0.874 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.121 0.879 37 H 0.075 0.925 38 H 0.125 0.875 39 H 0.076 0.924 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 13.467 6.354 -11.581 18.864 hybrid contribution -0.805 0.142 0.855 1.183 sum 12.662 6.496 -10.726 17.820 Atomic orbital electron populations 1.22615 0.98978 1.01679 0.99850 1.18831 0.90450 0.92738 0.83712 0.94323 1.21108 1.32758 1.14337 0.88261 0.90008 1.24895 0.95542 0.96696 0.95671 1.69871 1.45098 1.40110 0.98015 0.86956 0.80941 0.83637 0.77387 1.20068 1.22264 1.18737 1.55324 1.80899 1.18658 1.30543 1.00850 0.73176 0.72804 0.72414 1.93540 1.50732 1.67141 1.84223 1.93514 1.82747 1.61927 1.59247 1.31760 1.15332 1.13005 1.29963 1.23532 0.96187 0.92225 0.93197 1.77384 0.99898 1.11620 1.22424 1.49237 1.06181 1.11184 1.46941 1.21398 0.74411 0.99518 0.99260 1.22715 0.97503 1.03926 0.96645 1.22572 0.91794 0.84853 1.01903 1.87979 1.74307 1.32796 1.34735 1.22570 0.91799 1.01431 0.85154 1.22730 0.97853 0.95877 1.04848 1.22289 0.89859 0.93281 0.91953 0.93475 0.93370 0.92255 0.92389 0.75253 0.78697 0.87390 0.89588 0.89965 0.87936 0.92510 0.87538 0.92386 0.89530 0.88805 0.79612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.70 9.00 37.16 0.33 -3.36 16 2 C 0.25 5.54 2.35 -69.08 -0.16 5.38 16 3 H 0.04 0.87 6.71 -51.93 -0.35 0.52 16 4 C -0.53 -13.71 9.34 -34.44 -0.32 -14.03 16 5 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 6 C 0.08 2.06 5.45 -17.82 -0.10 1.96 16 7 N -0.89 -26.00 13.96 55.43 0.77 -25.23 16 8 Si 0.88 20.98 24.37 -169.99 -4.14 16.84 16 9 H -0.27 -6.35 6.87 56.52 0.39 -5.96 16 10 H -0.30 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.26 -5.93 6.53 56.52 0.37 -5.56 16 12 N -1.09 -20.70 5.46 -5.88 -0.03 -20.73 16 13 S 2.72 48.31 5.79 -107.50 -0.62 47.69 16 14 O -0.97 -19.18 17.13 -57.17 -0.98 -20.16 16 15 O -0.98 -18.19 17.85 -57.17 -1.02 -19.21 16 16 C -0.80 -13.35 6.00 -40.01 -0.24 -13.59 16 17 C 0.14 2.32 11.62 -17.36 -0.20 2.11 16 18 N -0.30 -4.83 12.58 30.63 0.39 -4.45 16 19 N -0.36 -4.98 3.54 -54.68 -0.19 -5.17 16 20 C 0.16 1.58 3.30 -67.74 -0.22 1.35 16 21 C -0.17 -1.42 5.74 -26.59 -0.15 -1.57 16 22 C 0.07 0.46 6.84 37.21 0.25 0.71 16 23 O -0.38 -3.30 10.76 -35.23 -0.38 -3.68 16 24 C 0.07 0.49 6.84 37.21 0.25 0.74 16 25 C -0.17 -1.51 5.13 -26.59 -0.14 -1.65 16 26 C 0.18 2.58 10.33 -17.23 -0.18 2.41 16 27 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 28 H 0.05 0.96 7.64 -51.93 -0.40 0.56 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.41 7.15 8.83 -34.47 -0.30 6.84 16 32 H 0.20 2.95 8.06 -52.49 -0.42 2.52 16 33 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.74 7.01 -51.93 -0.36 0.37 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.19 2.13 7.18 -52.49 -0.38 1.75 16 LS Contribution 352.22 15.07 5.31 5.31 Total: -1.00 -34.03 352.22 -7.56 -41.59 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -5.79 Total: 6.74 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -0.87 Total: -19.53 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.93 Total: -55.58 kcal Atomic # 8 Polarization: -40.67 SS G_CDS: -2.38 Total: -43.05 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.14 Total: 16.84 kcal Atomic # 16 Polarization: 48.31 SS G_CDS: -0.62 Total: 47.69 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.03 -7.56 -41.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331260035.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.777 kcal (2) G-P(sol) polarization free energy of solvation -34.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds