Wall clock time and date at job start Tue Mar 31 2020 07:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47204 * 2 1 4 4 C 1.50705 * 109.47035 * 240.00399 * 2 1 3 5 5 H 1.08004 * 119.99354 * 245.45827 * 4 2 1 6 6 C 1.37871 * 120.00381 * 65.45426 * 4 2 1 7 7 N 1.31521 * 119.99852 * 9.56176 * 6 4 2 8 8 Si 1.86794 * 120.00314 * 189.56754 * 6 4 2 9 9 H 1.48493 * 109.47390 * 84.99461 * 8 6 4 10 10 H 1.48502 * 109.47139 * 204.99819 * 8 6 4 11 11 H 1.48507 * 109.46965 * 324.98929 * 8 6 4 12 12 N 1.46494 * 109.47575 * 120.00143 * 2 1 3 13 13 S 1.65602 * 120.00264 * 265.00047 * 12 2 1 14 14 O 1.42099 * 106.39868 * 311.45838 * 13 12 2 15 15 O 1.42097 * 106.40599 * 178.53716 * 13 12 2 16 16 C 1.76199 * 107.21782 * 64.99385 * 13 12 2 17 17 C 1.39869 * 126.04363 * 270.00250 * 16 13 12 18 18 N 1.30842 * 108.20347 * 179.73823 * 17 16 13 19 19 N 1.40083 * 108.20448 * 0.40719 * 18 17 16 20 20 C 1.46498 * 126.03686 * 179.85029 * 19 18 17 21 21 C 1.53171 * 109.54656 * 264.68943 * 20 19 18 22 22 C 1.53087 * 109.21827 * 183.18394 * 21 20 19 23 23 O 1.42898 * 109.41622 * 57.57706 * 22 21 20 24 24 C 1.42900 * 114.09759 * 298.84552 * 23 22 21 25 25 C 1.53094 * 109.41868 * 61.15669 * 24 23 22 26 26 C 1.34952 * 107.92728 * 359.58925 * 19 18 17 27 27 H 1.09003 * 109.46531 * 303.83833 * 1 2 3 28 28 H 1.08999 * 109.47360 * 63.83581 * 1 2 3 29 29 H 1.08994 * 109.46980 * 183.84242 * 1 2 3 30 30 H 0.97000 * 119.99834 * 179.97438 * 7 6 4 31 31 H 0.97005 * 120.00323 * 84.99318 * 12 2 1 32 32 H 1.08003 * 125.89674 * 0.02562 * 17 16 13 33 33 H 1.09003 * 109.61586 * 24.91486 * 20 19 18 34 34 H 1.09000 * 109.52227 * 63.24384 * 21 20 19 35 35 H 1.08999 * 109.52415 * 303.12257 * 21 20 19 36 36 H 1.09003 * 109.48719 * 177.56030 * 22 21 20 37 37 H 1.08999 * 109.47908 * 297.59504 * 22 21 20 38 38 H 1.09001 * 109.48078 * 181.13740 * 24 23 22 39 39 H 1.09001 * 109.48451 * 301.16067 * 24 23 22 40 40 H 1.09002 * 109.51852 * 62.29530 * 25 24 23 41 41 H 1.08993 * 109.52553 * 182.42767 * 25 24 23 42 42 H 1.07991 * 126.12778 * 180.22395 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5786 -1.6370 -1.1339 6 6 1.7945 -0.1774 -2.4796 7 7 1.2991 1.0356 -2.5936 8 14 2.1757 -1.1781 -4.0102 9 1 1.0236 -2.0609 -4.3240 10 1 2.4224 -0.2614 -5.1522 11 1 3.3842 -2.0073 -3.7712 12 7 2.0184 -0.6906 1.1961 13 16 2.4123 0.1771 2.5504 14 8 3.2438 1.2442 2.1155 15 8 2.8126 -0.7698 3.5314 16 6 0.9277 0.9147 3.1474 17 6 0.4294 2.1705 2.7856 18 7 -0.6921 2.3666 3.4303 19 7 -0.9385 1.2439 4.2312 20 6 -2.0889 1.0536 5.1180 21 6 -1.7138 1.4759 6.5418 22 6 -2.8941 1.1997 7.4768 23 8 -3.2370 -0.1860 7.4123 24 6 -3.6432 -0.6268 6.1151 25 6 -2.4930 -0.4240 5.1253 26 6 0.0681 0.3662 4.0370 27 1 -0.3632 0.5723 0.8536 28 1 -0.3634 0.4531 -0.9223 29 1 -0.3633 -1.0253 0.0689 30 1 1.1322 1.4108 -3.4724 31 1 2.1110 -1.6562 1.1948 32 1 0.8885 2.8576 2.0901 33 1 -2.9255 1.6577 4.7669 34 1 -1.4790 2.5402 6.5561 35 1 -0.8453 0.9069 6.8736 36 1 -2.6167 1.4583 8.4987 37 1 -3.7498 1.8007 7.1691 38 1 -3.9054 -1.6840 6.1560 39 1 -4.5089 -0.0499 5.7896 40 1 -1.6406 -1.0323 5.4280 41 1 -2.8152 -0.7194 4.1269 42 1 0.1695 -0.6005 4.5076 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331260036.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:37 Heat of formation + Delta-G solvation = -49.550374 kcal Electronic energy + Delta-G solvation = -26797.227095 eV Core-core repulsion = 22906.003083 eV Total energy + Delta-G solvation = -3891.224013 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.44569 -39.56528 -36.55467 -35.39084 -35.16434 -35.08470 -32.13167 -31.74751 -30.67404 -30.26678 -28.36833 -25.44546 -25.13950 -24.19938 -22.32431 -21.41769 -20.92872 -20.14908 -18.86754 -18.01102 -17.26534 -16.63034 -16.57474 -15.93691 -15.47020 -15.39128 -15.16550 -15.06173 -14.85749 -14.54126 -13.91059 -13.82242 -13.54618 -12.99749 -12.86284 -12.61491 -12.20748 -12.15411 -11.91598 -11.69400 -11.62603 -11.50295 -11.37063 -11.30790 -11.23579 -10.96465 -10.92995 -10.62942 -10.45882 -10.39595 -10.18785 -10.05380 -9.51744 -9.26428 -9.05295 -8.52160 -8.29021 -6.12657 -4.15656 1.16168 1.64166 2.24955 2.51218 3.27895 3.34797 3.35078 3.37391 3.87064 3.98095 4.13851 4.34171 4.38371 4.42813 4.44750 4.49597 4.61960 4.74037 4.86446 4.95028 5.08032 5.16375 5.18271 5.21152 5.25157 5.42253 5.45731 5.57297 5.67245 5.79816 6.40024 6.52723 6.64180 6.68212 6.79096 6.82205 6.96226 7.52755 7.57342 7.59026 7.87627 7.99114 8.28643 8.86571 9.48517 10.95963 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018627 B = 0.003317 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.834484 B = 8440.239605 C = 8974.165583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.523 4.523 5 H 0.064 0.936 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.273 1.273 12 N -1.101 6.101 13 S 2.719 3.281 14 O -0.962 6.962 15 O -0.990 6.990 16 C -0.800 4.800 17 C 0.144 3.856 18 N -0.297 5.297 19 N -0.361 5.361 20 C 0.157 3.843 21 C -0.170 4.170 22 C 0.066 3.934 23 O -0.380 6.380 24 C 0.068 3.932 25 C -0.173 4.173 26 C 0.172 3.828 27 H 0.017 0.983 28 H 0.074 0.926 29 H 0.033 0.967 30 H 0.264 0.736 31 H 0.407 0.593 32 H 0.198 0.802 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.057 0.943 38 H 0.106 0.894 39 H 0.057 0.943 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.700 -1.036 17.400 20.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.164 3.836 3 H 0.077 0.923 4 C -0.563 4.563 5 H 0.082 0.918 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.861 5.861 13 S 2.805 3.195 14 O -0.952 6.952 15 O -0.981 6.981 16 C -0.897 4.897 17 C -0.046 4.046 18 N -0.115 5.115 19 N -0.139 5.139 20 C 0.055 3.945 21 C -0.208 4.208 22 C -0.011 4.011 23 O -0.298 6.298 24 C -0.010 4.010 25 C -0.212 4.212 26 C 0.020 3.980 27 H 0.036 0.964 28 H 0.093 0.907 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.240 0.760 32 H 0.215 0.785 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.121 0.879 37 H 0.075 0.925 38 H 0.124 0.876 39 H 0.076 0.924 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -11.102 0.128 18.105 21.239 hybrid contribution 0.061 -1.068 -1.452 1.803 sum -11.041 -0.940 16.653 20.003 Atomic orbital electron populations 1.22204 0.99188 0.99074 1.00493 1.18583 0.90117 0.93719 0.81181 0.92341 1.21186 1.36460 1.08690 0.89978 0.91757 1.24911 0.95102 0.94698 0.99033 1.69949 1.44361 1.13733 1.24223 0.86529 0.78735 0.79966 0.82287 1.20584 1.21222 1.19831 1.55529 1.83926 1.18935 1.27732 1.00942 0.73040 0.73184 0.72362 1.93558 1.63333 1.56768 1.81519 1.93494 1.81643 1.62302 1.60614 1.31912 1.28518 1.09623 1.19597 1.23582 0.91040 0.94137 0.95816 1.77407 1.18472 1.06229 1.09435 1.49241 1.18149 1.13383 1.33083 1.21359 0.86683 0.97920 0.88555 1.22709 1.00703 1.03737 0.93672 1.22578 0.95500 0.82660 1.00395 1.87982 1.86754 1.25316 1.29754 1.22560 0.94657 1.01443 0.82307 1.22715 1.01457 0.94665 1.02352 1.22275 0.86370 0.95503 0.93885 0.96391 0.90706 0.94827 0.92597 0.75951 0.78484 0.87487 0.89532 0.89959 0.87908 0.92517 0.87641 0.92436 0.89546 0.89098 0.79814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.40 37.16 0.35 -2.95 16 2 C 0.27 6.33 2.76 -69.08 -0.19 6.14 16 3 H 0.06 1.53 7.45 -51.93 -0.39 1.14 16 4 C -0.52 -13.67 8.68 -34.44 -0.30 -13.97 16 5 H 0.06 1.64 7.83 -52.48 -0.41 1.23 16 6 C 0.07 1.75 5.17 -17.82 -0.09 1.66 16 7 N -0.89 -24.38 12.16 55.43 0.67 -23.71 16 8 Si 0.90 20.58 29.55 -169.99 -5.02 15.56 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 N -1.10 -21.79 5.46 -5.88 -0.03 -21.82 16 13 S 2.72 51.03 5.86 -107.50 -0.63 50.40 16 14 O -0.96 -21.34 17.21 -57.17 -0.98 -22.32 16 15 O -0.99 -19.09 17.85 -57.17 -1.02 -20.11 16 16 C -0.80 -13.19 5.33 -40.01 -0.21 -13.40 16 17 C 0.14 2.40 10.88 -17.36 -0.19 2.21 16 18 N -0.30 -4.72 12.58 30.63 0.39 -4.34 16 19 N -0.36 -4.76 3.54 -54.68 -0.19 -4.95 16 20 C 0.16 1.47 3.30 -67.75 -0.22 1.25 16 21 C -0.17 -1.36 5.74 -26.60 -0.15 -1.51 16 22 C 0.07 0.43 6.84 37.20 0.25 0.68 16 23 O -0.38 -3.09 10.77 -35.23 -0.38 -3.47 16 24 C 0.07 0.43 6.84 37.21 0.25 0.68 16 25 C -0.17 -1.32 5.13 -26.58 -0.14 -1.45 16 26 C 0.17 2.38 10.33 -17.22 -0.18 2.20 16 27 H 0.02 0.35 6.26 -51.93 -0.33 0.02 16 28 H 0.07 1.82 6.83 -51.93 -0.35 1.47 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.41 7.25 8.82 -34.47 -0.30 6.95 16 32 H 0.20 3.15 8.06 -52.48 -0.42 2.72 16 33 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.09 0.66 7.01 -51.93 -0.36 0.29 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.18 2.00 7.18 -52.49 -0.38 1.62 16 LS Contribution 357.70 15.07 5.39 5.39 Total: -1.00 -33.53 357.70 -8.51 -42.04 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.88 Total: 5.78 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -0.82 Total: -18.46 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.83 Total: -54.81 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -2.38 Total: -45.90 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 51.03 SS G_CDS: -0.63 Total: 50.40 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.53 -8.51 -42.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331260036.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.506 kcal (2) G-P(sol) polarization free energy of solvation -33.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds