Wall clock time and date at job start Tue Mar 31 2020 07:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47774 * 2 1 4 4 C 1.50703 * 109.46748 * 240.00261 * 2 1 3 5 5 H 1.08006 * 120.00216 * 245.45648 * 4 2 1 6 6 C 1.37878 * 120.00274 * 65.45899 * 4 2 1 7 7 N 1.31515 * 119.99673 * 9.61972 * 6 4 2 8 8 Si 1.86800 * 120.00412 * 189.61701 * 6 4 2 9 9 H 1.48492 * 109.47015 * 84.99293 * 8 6 4 10 10 H 1.48500 * 109.47123 * 204.99685 * 8 6 4 11 11 H 1.48498 * 109.46780 * 324.99490 * 8 6 4 12 12 N 1.46500 * 109.47032 * 120.00527 * 2 1 3 13 13 C 1.46500 * 119.99809 * 59.99967 * 12 2 1 14 14 S 1.65597 * 120.00131 * 239.99593 * 12 2 1 15 15 O 1.42103 * 106.40040 * 336.46031 * 14 12 2 16 16 O 1.42103 * 106.40265 * 203.54277 * 14 12 2 17 17 C 1.76199 * 107.21858 * 89.99838 * 14 12 2 18 18 C 1.39868 * 126.03981 * 270.00377 * 17 14 12 19 19 N 1.30840 * 108.20076 * 179.73985 * 18 17 14 20 20 N 1.40084 * 108.20406 * 0.40306 * 19 18 17 21 21 C 1.46499 * 126.03718 * 179.85778 * 20 19 18 22 22 H 1.08997 * 110.46052 * 25.38415 * 21 20 19 23 23 C 1.54511 * 110.51064 * 262.78338 * 21 20 19 24 24 C 1.54481 * 104.06409 * 241.22086 * 23 21 20 25 25 O 1.44420 * 104.80444 * 23.97658 * 24 23 21 26 26 C 1.44644 * 105.36844 * 319.56879 * 25 24 23 27 27 C 1.34950 * 107.92544 * 359.59009 * 20 19 18 28 28 H 1.09006 * 109.46682 * 303.29326 * 1 2 3 29 29 H 1.08998 * 109.46919 * 63.28837 * 1 2 3 30 30 H 1.08995 * 109.47627 * 183.29130 * 1 2 3 31 31 H 0.97001 * 120.00226 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.47101 * 269.99433 * 13 12 2 33 33 H 1.08998 * 109.47575 * 29.99573 * 13 12 2 34 34 H 1.09004 * 109.47002 * 150.00008 * 13 12 2 35 35 H 1.08002 * 125.90069 * 359.97438 * 18 17 14 36 36 H 1.08998 * 110.51110 * 359.86209 * 23 21 20 37 37 H 1.08998 * 110.51167 * 122.57247 * 23 21 20 38 38 H 1.08996 * 110.37425 * 142.81510 * 24 23 21 39 39 H 1.09007 * 110.36790 * 265.14612 * 24 23 21 40 40 H 1.09008 * 110.33933 * 281.59112 * 26 25 24 41 41 H 1.08996 * 110.51184 * 159.18936 * 26 25 24 42 42 H 1.08005 * 126.12747 * 180.26168 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5785 -1.6371 -1.1340 6 6 1.7944 -0.1773 -2.4797 7 7 1.3003 1.0361 -2.5935 8 14 2.1742 -1.1786 -4.0103 9 1 1.0213 -2.0604 -4.3235 10 1 2.4213 -0.2623 -5.1525 11 1 3.3819 -2.0089 -3.7715 12 7 2.0183 -0.6907 1.1961 13 6 1.6643 -2.0933 1.4278 14 16 2.9704 0.1139 2.2862 15 8 3.5795 1.1827 1.5748 16 8 3.7118 -0.8793 2.9813 17 6 1.8962 0.8532 3.4711 18 6 1.3346 2.1315 3.3880 19 7 0.5920 2.3214 4.4484 20 7 0.6651 1.1717 5.2454 21 6 -0.0157 0.9661 6.5262 22 1 -0.9095 1.5870 6.5866 23 6 0.9381 1.2747 7.7020 24 6 1.0398 -0.0651 8.4644 25 8 0.7169 -1.0738 7.4826 26 6 -0.3779 -0.5239 6.7137 27 6 1.4687 0.2846 4.6221 28 1 -0.3633 0.5642 0.8591 29 1 -0.3633 0.4619 -0.9180 30 1 -0.3634 -1.0259 0.0590 31 1 1.1326 1.4111 -3.4723 32 1 0.7375 -2.1445 1.9992 33 1 1.5293 -2.5969 0.4706 34 1 2.4628 -2.5821 1.9861 35 1 1.4846 2.8382 2.5852 36 1 1.9169 1.5778 7.3303 37 1 0.5159 2.0481 8.3435 38 1 2.0523 -0.2118 8.8404 39 1 0.3223 -0.0903 9.2845 40 1 -1.3137 -0.6205 7.2644 41 1 -0.4529 -1.0208 5.7465 42 1 1.7246 -0.7025 4.9781 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332373108.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:17 Heat of formation + Delta-G solvation = -29.593429 kcal Electronic energy + Delta-G solvation = -27174.380269 eV Core-core repulsion = 23284.021654 eV Total energy + Delta-G solvation = -3890.358615 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.52404 -39.50604 -36.51167 -36.08003 -35.07287 -33.95139 -32.49135 -31.00779 -30.24896 -29.14523 -28.78506 -25.46541 -25.09978 -23.98518 -22.73596 -21.70723 -20.64552 -20.43314 -18.61694 -17.66521 -16.93022 -16.72239 -16.47337 -16.20796 -15.67591 -15.42482 -15.15440 -14.77451 -14.52519 -14.30665 -13.51017 -13.39260 -13.17342 -12.91406 -12.66362 -12.58760 -12.20678 -12.10976 -11.96703 -11.73000 -11.70408 -11.50157 -11.38213 -11.23128 -11.11212 -10.89045 -10.77767 -10.54255 -10.42895 -10.32142 -10.23837 -9.96201 -9.55026 -9.27255 -9.11759 -8.37327 -7.91139 -6.04669 -4.07407 1.15945 1.59330 2.19708 2.46147 3.28933 3.32334 3.39166 3.42244 3.89006 3.91150 4.00996 4.36773 4.42712 4.44045 4.47785 4.57211 4.61253 4.87140 4.94166 5.04737 5.13965 5.20130 5.27471 5.28123 5.43842 5.55387 5.75715 5.79523 6.12815 6.13873 6.39308 6.47673 6.67400 6.74637 6.79615 6.81214 7.03967 7.42474 7.47244 7.67505 7.81898 8.00592 8.31124 8.94114 9.56367 11.03269 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.023552 B = 0.003463 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.561390 B = 8084.657276 C = 8192.060531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.266 3.734 3 H 0.068 0.932 4 C -0.523 4.523 5 H 0.064 0.936 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.980 5.980 13 C 0.095 3.905 14 S 2.712 3.288 15 O -0.953 6.953 16 O -0.982 6.982 17 C -0.805 4.805 18 C 0.141 3.859 19 N -0.299 5.299 20 N -0.363 5.363 21 C 0.122 3.878 22 H 0.122 0.878 23 C -0.168 4.168 24 C 0.044 3.956 25 O -0.366 6.366 26 C 0.033 3.967 27 C 0.175 3.825 28 H 0.014 0.986 29 H 0.074 0.926 30 H 0.034 0.966 31 H 0.263 0.737 32 H 0.034 0.966 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.199 0.801 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.266 -1.538 20.665 21.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.163 3.837 3 H 0.086 0.914 4 C -0.563 4.563 5 H 0.082 0.918 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.820 5.820 13 C -0.052 4.052 14 S 2.800 3.200 15 O -0.943 6.943 16 O -0.972 6.972 17 C -0.901 4.901 18 C -0.049 4.049 19 N -0.117 5.117 20 N -0.141 5.141 21 C 0.019 3.981 22 H 0.140 0.860 23 C -0.207 4.207 24 C -0.033 4.033 25 O -0.285 6.285 26 C -0.045 4.045 27 C 0.024 3.976 28 H 0.033 0.967 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.216 0.784 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.125 0.875 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -5.213 -0.716 21.310 21.950 hybrid contribution -0.251 -0.571 -0.973 1.156 sum -5.463 -1.287 20.337 21.097 Atomic orbital electron populations 1.22040 0.98761 0.99138 1.00122 1.18765 0.90747 0.93792 0.80398 0.91397 1.21293 1.36217 1.08664 0.90077 0.91777 1.24908 0.95186 0.94650 0.98940 1.69950 1.44616 1.13716 1.24093 0.86576 0.78719 0.80037 0.82481 1.20614 1.21275 1.19851 1.57391 1.70397 1.19417 1.34785 1.21327 0.98768 0.82355 1.02714 1.01301 0.73426 0.73078 0.72237 1.93564 1.73355 1.56080 1.71283 1.93479 1.68836 1.59603 1.75301 1.32213 1.31132 1.08609 1.18133 1.23616 0.91183 0.94320 0.95738 1.77395 1.24038 1.05126 1.05150 1.49174 1.36090 1.11923 1.16953 1.22770 0.96388 0.98950 0.79947 0.86013 1.23484 1.01289 0.99480 0.96443 1.23518 1.02434 0.85755 0.91579 1.89261 1.51515 1.40044 1.47652 1.23931 0.91609 0.90558 0.98407 1.22411 0.88679 0.95919 0.90632 0.96732 0.90694 0.94686 0.92696 0.94695 0.89716 0.91667 0.78388 0.89307 0.88627 0.88175 0.91379 0.89333 0.87523 0.79422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 9.12 37.16 0.34 -2.81 16 2 C 0.27 6.43 2.49 -69.08 -0.17 6.26 16 3 H 0.07 1.82 6.85 -51.93 -0.36 1.47 16 4 C -0.52 -13.92 8.01 -34.44 -0.28 -14.19 16 5 H 0.06 1.68 7.16 -52.48 -0.38 1.31 16 6 C 0.07 1.79 5.17 -17.82 -0.09 1.70 16 7 N -0.89 -24.81 12.16 55.43 0.67 -24.14 16 8 Si 0.89 20.95 29.55 -169.99 -5.02 15.92 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.98 -20.21 3.06 -115.85 -0.35 -20.56 16 13 C 0.09 1.65 9.58 59.85 0.57 2.22 16 14 S 2.71 53.92 5.83 -107.50 -0.63 53.30 16 15 O -0.95 -22.26 16.43 -57.17 -0.94 -23.20 16 16 O -0.98 -20.06 16.45 -57.17 -0.94 -21.00 16 17 C -0.81 -13.51 6.17 -40.02 -0.25 -13.76 16 18 C 0.14 2.32 11.82 -17.36 -0.21 2.12 16 19 N -0.30 -4.62 12.58 30.62 0.39 -4.24 16 20 N -0.36 -4.70 3.50 -53.34 -0.19 -4.89 16 21 C 0.12 1.06 4.23 -66.36 -0.28 0.78 16 22 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 23 C -0.17 -1.19 6.88 -25.16 -0.17 -1.37 16 24 C 0.04 0.28 7.64 37.93 0.29 0.57 16 25 O -0.37 -3.33 11.65 -35.23 -0.41 -3.74 16 26 C 0.03 0.25 6.64 37.93 0.25 0.50 16 27 C 0.18 2.49 10.00 -17.22 -0.17 2.31 16 28 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 1.83 6.84 -51.93 -0.36 1.48 16 30 H 0.03 0.72 7.56 -51.93 -0.39 0.33 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 1.52 6.92 -51.93 -0.36 1.17 16 34 H 0.06 1.05 7.02 -51.93 -0.36 0.68 16 35 H 0.20 3.05 8.06 -52.49 -0.42 2.62 16 36 H 0.09 0.80 7.96 -51.93 -0.41 0.39 16 37 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.09 0.44 8.14 -51.92 -0.42 0.01 16 41 H 0.11 0.86 7.38 -51.93 -0.38 0.48 16 42 H 0.19 2.30 7.80 -52.48 -0.41 1.89 16 LS Contribution 359.13 15.07 5.41 5.41 Total: -1.00 -34.04 359.13 -8.10 -42.14 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -5.93 Total: 0.67 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -0.16 Total: -15.67 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.52 Total: -53.83 kcal Atomic # 8 Polarization: -45.65 SS G_CDS: -2.29 Total: -47.94 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 53.92 SS G_CDS: -0.63 Total: 53.30 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.04 -8.10 -42.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332373108.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.552 kcal (2) G-P(sol) polarization free energy of solvation -34.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds