Wall clock time and date at job start Tue Mar 31 2020 07:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47539 * 2 1 4 4 C 1.50701 * 109.47099 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00345 * 274.98857 * 4 2 1 6 6 C 1.37881 * 120.00001 * 94.98821 * 4 2 1 7 7 N 1.31509 * 119.99913 * 184.90771 * 6 4 2 8 8 Si 1.86801 * 119.99805 * 4.90402 * 6 4 2 9 9 H 1.48503 * 109.46924 * 84.83717 * 8 6 4 10 10 H 1.48503 * 109.46976 * 204.83395 * 8 6 4 11 11 H 1.48496 * 109.47112 * 324.83284 * 8 6 4 12 12 N 1.46505 * 109.47029 * 119.99972 * 2 1 3 13 13 C 1.46501 * 120.00085 * 60.00364 * 12 2 1 14 14 S 1.65599 * 119.99979 * 239.99548 * 12 2 1 15 15 O 1.42094 * 106.40423 * 156.46146 * 14 12 2 16 16 O 1.42105 * 106.40133 * 23.54268 * 14 12 2 17 17 C 1.76201 * 107.22103 * 270.00183 * 14 12 2 18 18 C 1.39872 * 126.03688 * 89.97583 * 17 14 12 19 19 N 1.30841 * 108.19946 * 180.02562 * 18 17 14 20 20 N 1.40084 * 108.20738 * 0.02562 * 19 18 17 21 21 C 1.46499 * 126.04083 * 180.02562 * 20 19 18 22 22 H 1.09003 * 110.80034 * 331.38924 * 21 20 19 23 23 C 1.54815 * 110.90894 * 95.01466 * 21 20 19 24 24 C 1.54102 * 104.18418 * 139.11650 * 23 21 20 25 25 O 1.43740 * 107.42173 * 1.95454 * 24 23 21 26 26 C 1.44580 * 106.87310 * 333.67297 * 25 24 23 27 27 C 1.34948 * 107.92391 * 0.25733 * 20 19 18 28 28 H 1.08995 * 109.47491 * 54.97932 * 1 2 3 29 29 H 1.09006 * 109.47466 * 174.97774 * 1 2 3 30 30 H 1.09003 * 109.46935 * 294.97728 * 1 2 3 31 31 H 0.97002 * 120.00282 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.46444 * 269.99606 * 13 12 2 33 33 H 1.08999 * 109.47332 * 29.99192 * 13 12 2 34 34 H 1.08994 * 109.47382 * 149.99886 * 13 12 2 35 35 H 1.07997 * 125.90366 * 0.02562 * 18 17 14 36 36 H 1.08997 * 110.48444 * 20.43973 * 23 21 20 37 37 H 1.08994 * 110.48530 * 257.79229 * 23 21 20 38 38 H 1.09000 * 109.88040 * 121.45464 * 24 23 21 39 39 H 1.08999 * 109.87399 * 242.45898 * 24 23 21 40 40 H 1.09005 * 110.50333 * 281.37986 * 26 25 24 41 41 H 1.08994 * 110.77760 * 158.51029 * 26 25 24 42 42 H 1.07997 * 126.12844 * 179.73669 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1356 -1.7855 -1.2289 6 6 2.3599 0.0120 -2.3582 7 7 2.7058 -0.6133 -3.4622 8 14 2.3126 1.8789 -2.3178 9 1 3.5980 2.3952 -1.7827 10 1 2.1046 2.3987 -3.6933 11 1 1.1975 2.3270 -1.4455 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 16 2.9704 0.1141 2.2862 15 8 2.8228 -0.5645 3.5259 16 8 2.6904 1.4973 2.1192 17 6 4.6444 -0.1183 1.7880 18 6 5.3662 0.7059 0.9185 19 7 6.5707 0.2108 0.7916 20 7 6.6533 -0.9461 1.5771 21 6 7.8293 -1.8078 1.7214 22 1 8.4473 -1.7727 0.8241 23 6 8.6509 -1.4162 2.9737 24 6 9.0687 -2.7661 3.5885 25 8 8.5681 -3.8038 2.7290 26 6 7.4120 -3.2641 2.0490 27 6 5.4567 -1.1296 2.1734 28 1 -0.3634 0.5897 -0.8415 29 1 -0.3634 -1.0238 -0.0900 30 1 -0.3633 0.4340 0.9316 31 1 2.9359 -0.1051 -4.2557 32 1 0.7375 -2.1443 1.9994 33 1 1.5294 -2.5969 0.4709 34 1 2.4628 -2.5819 1.9864 35 1 4.9937 1.5971 0.4352 36 1 8.0340 -0.8527 3.6737 37 1 9.5299 -0.8387 2.6880 38 1 10.1555 -2.8259 3.6476 39 1 8.6372 -2.8692 4.5841 40 1 6.5425 -3.2756 2.7063 41 1 7.2073 -3.8198 1.1340 42 1 5.1952 -1.9372 2.8410 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332373110.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:20 Heat of formation + Delta-G solvation = -28.039113 kcal Electronic energy + Delta-G solvation = -27421.956403 eV Core-core repulsion = 23531.665188 eV Total energy + Delta-G solvation = -3890.291214 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 4.13 seconds Orbital eigenvalues (eV) -41.42871 -39.49748 -36.70413 -36.28681 -35.27052 -34.00618 -32.49427 -30.91574 -30.25805 -29.91631 -28.66033 -25.68921 -25.17421 -23.97548 -22.63371 -21.60017 -20.56948 -20.44512 -18.70311 -17.78228 -17.33447 -17.01685 -16.49839 -16.17262 -15.63746 -15.41448 -14.93729 -14.86800 -14.53280 -14.27139 -13.78920 -13.68478 -13.15441 -13.05076 -12.70684 -12.62057 -12.51879 -12.11070 -11.96427 -11.94532 -11.77157 -11.71052 -11.53431 -11.40894 -11.20953 -11.16579 -10.79669 -10.69685 -10.49937 -10.29219 -10.22150 -9.82490 -9.49930 -9.40505 -9.05930 -8.65065 -8.03689 -6.21795 -4.22122 1.03997 1.62503 2.19094 2.54606 3.22777 3.32579 3.38588 3.42385 3.70892 3.98150 4.03245 4.31132 4.35412 4.38555 4.43235 4.55903 4.64984 4.76526 5.06270 5.13414 5.18078 5.22905 5.26895 5.40692 5.46799 5.57789 5.61161 5.70617 6.09011 6.15684 6.22131 6.37317 6.46580 6.53860 6.58397 6.69140 6.79467 6.97816 7.20253 7.44209 7.54174 7.65633 8.39076 8.82998 9.39895 10.90172 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014368 B = 0.004656 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.365373 B = 6012.884698 C = 6668.215755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.232 3.768 3 H 0.058 0.942 4 C -0.519 4.519 5 H 0.082 0.918 6 C 0.080 3.920 7 N -0.888 5.888 8 Si 0.856 3.144 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.256 1.256 12 N -0.977 5.977 13 C 0.105 3.895 14 S 2.708 3.292 15 O -0.981 6.981 16 O -0.966 6.966 17 C -0.794 4.794 18 C 0.147 3.853 19 N -0.290 5.290 20 N -0.357 5.357 21 C 0.124 3.876 22 H 0.124 0.876 23 C -0.169 4.169 24 C 0.047 3.953 25 O -0.364 6.364 26 C 0.038 3.962 27 C 0.167 3.833 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.029 0.971 31 H 0.266 0.734 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.195 0.805 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.114 0.886 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.810 -3.754 12.226 15.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.129 3.871 3 H 0.076 0.924 4 C -0.558 4.558 5 H 0.100 0.900 6 C -0.124 4.124 7 N -0.525 5.525 8 Si 0.682 3.318 9 H -0.194 1.194 10 H -0.210 1.210 11 H -0.180 1.180 12 N -0.817 5.817 13 C -0.041 4.041 14 S 2.798 3.202 15 O -0.972 6.972 16 O -0.956 6.956 17 C -0.891 4.891 18 C -0.043 4.043 19 N -0.108 5.108 20 N -0.135 5.135 21 C 0.021 3.979 22 H 0.142 0.858 23 C -0.208 4.208 24 C -0.030 4.030 25 O -0.282 6.282 26 C -0.040 4.040 27 C 0.015 3.985 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.212 0.788 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.132 0.868 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 10.040 -3.441 12.190 16.163 hybrid contribution -0.183 0.832 -0.360 0.924 sum 9.858 -2.609 11.830 15.618 Atomic orbital electron populations 1.22158 0.97714 1.01168 0.99242 1.19134 0.91852 0.93056 0.83047 0.92385 1.21188 1.43958 0.95989 0.94705 0.90037 1.24960 0.94036 0.98137 0.95310 1.69875 1.44952 1.36003 1.01693 0.87180 0.80209 0.86574 0.77878 1.19398 1.21003 1.18044 1.57643 1.63384 1.21514 1.39115 1.21229 0.99090 0.81761 1.02050 1.01359 0.72510 0.73452 0.72919 1.93490 1.86317 1.75871 1.41479 1.93521 1.83917 1.31688 1.86513 1.31908 1.27490 1.08424 1.21239 1.23514 0.89601 0.98079 0.93060 1.77436 1.20943 0.97518 1.14952 1.48943 1.09449 1.20477 1.34677 1.22929 0.85184 0.88793 1.01022 0.85782 1.23414 1.01574 0.98985 0.96785 1.23198 1.00442 0.85297 0.94101 1.89013 1.44194 1.35964 1.59021 1.23968 0.89903 0.91252 0.98846 1.22266 0.84820 0.97153 0.94287 0.92640 0.92842 0.95197 0.92368 0.93558 0.90029 0.92985 0.78807 0.89470 0.88864 0.88963 0.91468 0.90681 0.86830 0.79691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.10 37.15 0.34 -2.55 16 2 C 0.23 5.20 2.28 -69.08 -0.16 5.04 16 3 H 0.06 1.37 4.06 -51.93 -0.21 1.16 16 4 C -0.52 -13.23 8.72 -34.44 -0.30 -13.53 16 5 H 0.08 2.22 6.82 -52.49 -0.36 1.86 16 6 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 7 N -0.89 -25.49 13.96 55.43 0.77 -24.72 16 8 Si 0.86 20.41 26.99 -169.99 -4.59 15.82 16 9 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.26 -5.89 6.82 56.52 0.39 -5.50 16 12 N -0.98 -19.11 3.06 -115.86 -0.35 -19.46 16 13 C 0.10 1.72 9.44 59.85 0.57 2.29 16 14 S 2.71 51.43 5.78 -107.50 -0.62 50.81 16 15 O -0.98 -18.59 16.92 -57.17 -0.97 -19.56 16 16 O -0.97 -20.75 16.44 -57.17 -0.94 -21.69 16 17 C -0.79 -13.97 6.17 -40.01 -0.25 -14.21 16 18 C 0.15 2.72 11.82 -17.36 -0.21 2.51 16 19 N -0.29 -5.12 12.58 30.63 0.39 -4.74 16 20 N -0.36 -5.15 3.61 -52.92 -0.19 -5.35 16 21 C 0.12 1.32 4.28 -65.92 -0.28 1.04 16 22 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 23 C -0.17 -1.42 6.76 -25.20 -0.17 -1.59 16 24 C 0.05 0.35 7.69 37.73 0.29 0.64 16 25 O -0.36 -3.60 11.54 -35.23 -0.41 -4.00 16 26 C 0.04 0.36 7.06 38.21 0.27 0.63 16 27 C 0.17 2.44 10.33 -17.22 -0.18 2.26 16 28 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.05 1.01 7.84 -51.93 -0.41 0.61 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 1.40 6.56 -51.93 -0.34 1.06 16 34 H 0.05 0.73 7.79 -51.93 -0.40 0.32 16 35 H 0.20 3.48 8.06 -52.49 -0.42 3.05 16 36 H 0.09 0.78 8.05 -51.93 -0.42 0.36 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.64 6.26 -51.93 -0.33 0.31 16 41 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.19 2.05 6.78 -52.49 -0.36 1.69 16 LS Contribution 356.70 15.07 5.38 5.38 Total: -1.00 -32.85 356.70 -7.49 -40.34 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -5.78 Total: 2.61 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -0.17 Total: -15.43 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.61 Total: -54.27 kcal Atomic # 8 Polarization: -42.93 SS G_CDS: -2.31 Total: -45.25 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.59 Total: 15.82 kcal Atomic # 16 Polarization: 51.43 SS G_CDS: -0.62 Total: 50.81 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.85 -7.49 -40.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332373110.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.297 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.13 seconds