Wall clock time and date at job start Tue Mar 31 2020 07:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47315 * 2 1 4 4 C 1.50699 * 109.47030 * 119.99958 * 2 1 3 5 5 H 1.07999 * 120.00803 * 119.99828 * 4 2 1 6 6 C 1.37881 * 119.99889 * 299.99649 * 4 2 1 7 7 N 1.31520 * 120.00186 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00030 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47297 * 89.99863 * 8 6 4 10 10 H 1.48503 * 109.47261 * 330.00044 * 8 6 4 11 11 H 1.48500 * 109.47454 * 210.00037 * 8 6 4 12 12 N 1.46503 * 109.46794 * 239.99336 * 2 1 3 13 13 C 1.46502 * 120.00141 * 300.00198 * 12 2 1 14 14 S 1.65598 * 119.99487 * 120.00245 * 12 2 1 15 15 O 1.42106 * 106.40008 * 203.53842 * 14 12 2 16 16 O 1.42096 * 106.40484 * 336.46230 * 14 12 2 17 17 C 1.76205 * 107.21725 * 90.00129 * 14 12 2 18 18 C 1.39869 * 126.04148 * 90.02491 * 17 14 12 19 19 N 1.30838 * 108.20212 * 179.97438 * 18 17 14 20 20 N 1.40081 * 108.20525 * 359.97438 * 19 18 17 21 21 C 1.46505 * 126.03484 * 180.02562 * 20 19 18 22 22 H 1.08993 * 110.45350 * 334.27291 * 21 20 19 23 23 C 1.54512 * 110.50913 * 96.87733 * 21 20 19 24 24 C 1.54481 * 104.06092 * 118.64548 * 23 21 20 25 25 O 1.44421 * 104.80296 * 23.97554 * 24 23 21 26 26 C 1.44644 * 105.37120 * 319.56352 * 25 24 23 27 27 C 1.34948 * 107.92607 * 359.75757 * 20 19 18 28 28 H 1.09002 * 109.47140 * 300.00483 * 1 2 3 29 29 H 1.09002 * 109.47215 * 60.00272 * 1 2 3 30 30 H 1.08995 * 109.47372 * 180.02562 * 1 2 3 31 31 H 0.96998 * 120.00124 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47030 * 89.99917 * 13 12 2 33 33 H 1.09000 * 109.46652 * 209.99917 * 13 12 2 34 34 H 1.09003 * 109.46787 * 329.99974 * 13 12 2 35 35 H 1.07998 * 125.89660 * 359.97438 * 18 17 14 36 36 H 1.08996 * 110.50804 * 237.28746 * 23 21 20 37 37 H 1.08991 * 110.51350 * 0.02562 * 23 21 20 38 38 H 1.09001 * 110.37058 * 142.80638 * 24 23 21 39 39 H 1.09004 * 110.37018 * 265.03426 * 24 23 21 40 40 H 1.08999 * 110.34517 * 281.59261 * 26 25 24 41 41 H 1.08997 * 110.50658 * 159.18416 * 26 25 24 42 42 H 1.07999 * 126.12812 * 180.24197 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4827 7 7 2.1380 -0.8589 3.5566 8 14 0.6248 1.2792 2.6541 9 1 -0.8028 0.8728 2.6998 10 1 0.8471 2.1766 1.4919 11 1 0.9759 1.9953 3.9067 12 7 2.0183 -0.6908 -1.1961 13 6 1.6643 -2.0934 -1.4278 14 16 2.9703 0.1140 -2.2862 15 8 2.8227 -0.5649 -3.5259 16 8 2.6904 1.4970 -2.1193 17 6 4.6444 -0.1185 -1.7880 18 6 5.4863 -1.1597 -2.1922 19 7 6.6485 -0.9932 -1.6147 20 7 6.5830 0.1614 -0.8242 21 6 7.6688 0.7096 -0.0077 22 1 8.3644 -0.0786 0.2800 23 6 8.4075 1.8312 -0.7718 24 6 8.1991 3.0844 0.1071 25 8 7.9537 2.5682 1.4334 26 6 7.1016 1.4147 1.2443 27 6 5.3448 0.6827 -0.9522 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.9034 -0.5277 4.4376 32 1 0.7374 -2.1446 -1.9991 33 1 2.4627 -2.5821 -1.9862 34 1 1.5294 -2.5969 -0.4706 35 1 5.2226 -1.9625 -2.8647 36 1 9.4687 1.5985 -0.8597 37 1 7.9645 1.9781 -1.7568 38 1 9.0950 3.7052 0.1013 39 1 7.3400 3.6558 -0.2445 40 1 6.0725 1.7283 1.0697 41 1 7.1562 0.7538 2.1093 42 1 4.9778 1.5773 -0.4713 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332373113.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:40 Heat of formation + Delta-G solvation = -20.714058 kcal Electronic energy + Delta-G solvation = -27576.977572 eV Core-core repulsion = 23687.003996 eV Total energy + Delta-G solvation = -3889.973576 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.45478 -39.35269 -36.74618 -36.38059 -35.30949 -33.92111 -32.55596 -30.78792 -30.23558 -30.03654 -28.58550 -25.72283 -25.07405 -23.93858 -22.65420 -21.60513 -20.85937 -20.30906 -18.68209 -17.73876 -17.15172 -16.84154 -16.50413 -16.16614 -15.52678 -15.45631 -14.98479 -14.78857 -14.63695 -14.51850 -13.70925 -13.48590 -13.18823 -13.02295 -12.86046 -12.53826 -12.33069 -12.15038 -12.08183 -11.91633 -11.77876 -11.70447 -11.59359 -11.47748 -11.22940 -11.19262 -10.96046 -10.60294 -10.42358 -10.17402 -10.16200 -9.62366 -9.52777 -9.46748 -9.07882 -8.70778 -8.09844 -6.21539 -4.22953 1.01123 1.67033 2.23071 2.44730 3.19308 3.32109 3.33175 3.58487 3.67779 4.09199 4.13969 4.28261 4.34636 4.46192 4.50004 4.66062 4.79951 4.85497 5.03511 5.10273 5.26986 5.34108 5.44598 5.48118 5.52631 5.55318 5.58843 5.70223 6.11198 6.17447 6.25240 6.29208 6.39577 6.46135 6.54344 6.65728 6.81504 6.85875 7.26516 7.32682 7.49053 7.59517 8.38136 8.82305 9.39222 10.90640 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010664 B = 0.005843 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.911613 B = 4791.006747 C = 6370.519157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.238 3.762 3 H 0.057 0.943 4 C -0.528 4.528 5 H 0.083 0.917 6 C 0.076 3.924 7 N -0.893 5.893 8 Si 0.874 3.126 9 H -0.275 1.275 10 H -0.260 1.260 11 H -0.295 1.295 12 N -0.976 5.976 13 C 0.103 3.897 14 S 2.719 3.281 15 O -0.973 6.973 16 O -0.970 6.970 17 C -0.802 4.802 18 C 0.133 3.867 19 N -0.294 5.294 20 N -0.356 5.356 21 C 0.124 3.876 22 H 0.122 0.878 23 C -0.168 4.168 24 C 0.041 3.959 25 O -0.362 6.362 26 C 0.034 3.966 27 C 0.186 3.814 28 H 0.048 0.952 29 H 0.036 0.964 30 H 0.059 0.941 31 H 0.266 0.734 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.196 0.804 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.116 0.884 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.176 3.653 -7.995 12.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.133 3.867 3 H 0.075 0.925 4 C -0.567 4.567 5 H 0.101 0.899 6 C -0.127 4.127 7 N -0.531 5.531 8 Si 0.704 3.296 9 H -0.202 1.202 10 H -0.185 1.185 11 H -0.222 1.222 12 N -0.815 5.815 13 C -0.043 4.043 14 S 2.807 3.193 15 O -0.964 6.964 16 O -0.960 6.960 17 C -0.899 4.899 18 C -0.056 4.056 19 N -0.113 5.113 20 N -0.135 5.135 21 C 0.021 3.979 22 H 0.140 0.860 23 C -0.206 4.206 24 C -0.036 4.036 25 O -0.280 6.280 26 C -0.044 4.044 27 C 0.034 3.966 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.212 0.788 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.134 0.866 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 10.368 3.783 -8.050 13.661 hybrid contribution -0.938 0.585 0.567 1.243 sum 9.430 4.368 -7.484 12.806 Atomic orbital electron populations 1.22409 0.98629 1.01472 0.99218 1.19098 0.91091 0.93367 0.83139 0.92527 1.21235 1.32692 1.14424 0.88313 0.89941 1.24894 0.95529 0.96565 0.95738 1.69878 1.45126 1.40090 0.97992 0.87063 0.81047 0.83966 0.77564 1.20198 1.18462 1.22203 1.57157 1.63568 1.21787 1.38959 1.21284 0.99265 0.81356 1.02375 1.00977 0.72375 0.73138 0.72797 1.93508 1.86174 1.75784 1.40903 1.93522 1.84148 1.31766 1.86585 1.31841 1.27557 1.09179 1.21352 1.23465 0.89252 0.96563 0.96366 1.77346 1.22541 1.01405 1.09963 1.49068 1.09727 1.19457 1.35269 1.22811 0.87690 0.97450 0.89970 0.86004 1.23438 1.02337 0.94465 1.00404 1.23506 1.02213 0.95541 0.82348 1.89252 1.68926 1.43541 1.26244 1.23949 0.95367 0.87872 0.97209 1.22330 0.84380 0.97262 0.92658 0.93341 0.94531 0.92194 0.92448 0.93503 0.92590 0.89734 0.78770 0.88824 0.89316 0.88205 0.91437 0.90209 0.86623 0.79460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 8.67 37.16 0.32 -2.95 16 2 C 0.24 5.25 2.21 -69.08 -0.15 5.09 16 3 H 0.06 1.29 5.97 -51.93 -0.31 0.98 16 4 C -0.53 -13.32 8.57 -34.44 -0.30 -13.62 16 5 H 0.08 2.25 7.58 -52.49 -0.40 1.86 16 6 C 0.08 2.01 5.45 -17.82 -0.10 1.92 16 7 N -0.89 -25.35 13.96 55.43 0.77 -24.58 16 8 Si 0.87 20.43 24.37 -169.99 -4.14 16.28 16 9 H -0.28 -6.28 6.87 56.52 0.39 -5.90 16 10 H -0.26 -5.86 6.53 56.52 0.37 -5.49 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 N -0.98 -18.76 3.06 -115.85 -0.35 -19.12 16 13 C 0.10 1.72 9.29 59.85 0.56 2.28 16 14 S 2.72 49.76 5.78 -107.50 -0.62 49.14 16 15 O -0.97 -18.38 16.94 -57.17 -0.97 -19.35 16 16 O -0.97 -19.71 16.41 -57.17 -0.94 -20.65 16 17 C -0.80 -13.45 6.17 -40.01 -0.25 -13.69 16 18 C 0.13 2.07 11.81 -17.36 -0.21 1.87 16 19 N -0.29 -4.66 12.58 30.62 0.39 -4.28 16 20 N -0.36 -5.19 3.51 -53.34 -0.19 -5.38 16 21 C 0.12 1.41 4.23 -66.36 -0.28 1.13 16 22 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 23 C -0.17 -1.53 6.88 -25.16 -0.17 -1.70 16 24 C 0.04 0.37 7.64 37.93 0.29 0.66 16 25 O -0.36 -4.30 11.65 -35.23 -0.41 -4.71 16 26 C 0.03 0.40 7.21 37.93 0.27 0.68 16 27 C 0.19 2.92 10.19 -17.22 -0.18 2.75 16 28 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 1.17 7.67 -51.93 -0.40 0.77 16 31 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.81 7.79 -51.93 -0.40 0.40 16 34 H 0.08 1.49 7.02 -51.93 -0.36 1.13 16 35 H 0.20 2.46 8.06 -52.49 -0.42 2.04 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.86 7.96 -51.93 -0.41 0.44 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 1.00 5.98 -51.93 -0.31 0.69 16 41 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.19 2.63 6.90 -52.49 -0.36 2.27 16 LS Contribution 350.60 15.07 5.28 5.28 Total: -1.00 -32.55 350.60 -7.06 -39.61 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -5.69 Total: 3.34 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -0.19 Total: -15.59 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.62 Total: -53.35 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: -2.32 Total: -44.71 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.14 Total: 16.28 kcal Atomic # 16 Polarization: 49.76 SS G_CDS: -0.62 Total: 49.14 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.55 -7.06 -39.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332373113.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.894 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds