Wall clock time and date at job start Tue Mar 31 2020 07:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47315 * 2 1 4 4 C 1.50699 * 109.47030 * 119.99958 * 2 1 3 5 5 H 1.07999 * 120.00803 * 119.99828 * 4 2 1 6 6 C 1.37881 * 119.99889 * 299.99649 * 4 2 1 7 7 N 1.31520 * 120.00186 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00030 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47297 * 89.99863 * 8 6 4 10 10 H 1.48503 * 109.47261 * 330.00044 * 8 6 4 11 11 H 1.48500 * 109.47454 * 210.00037 * 8 6 4 12 12 N 1.46503 * 109.46794 * 239.99336 * 2 1 3 13 13 C 1.46502 * 120.00141 * 300.00198 * 12 2 1 14 14 S 1.65598 * 119.99487 * 120.00245 * 12 2 1 15 15 O 1.42106 * 106.40008 * 203.53842 * 14 12 2 16 16 O 1.42096 * 106.40484 * 336.46230 * 14 12 2 17 17 C 1.76205 * 107.21725 * 90.00129 * 14 12 2 18 18 C 1.39869 * 126.04148 * 90.02491 * 17 14 12 19 19 N 1.30838 * 108.20212 * 179.97438 * 18 17 14 20 20 N 1.40081 * 108.20525 * 359.97438 * 19 18 17 21 21 C 1.46505 * 126.03484 * 180.02562 * 20 19 18 22 22 H 1.08993 * 110.45350 * 334.27291 * 21 20 19 23 23 C 1.54512 * 110.50913 * 96.87733 * 21 20 19 24 24 C 1.54481 * 104.06092 * 118.64548 * 23 21 20 25 25 O 1.44421 * 104.80296 * 23.97554 * 24 23 21 26 26 C 1.44644 * 105.37120 * 319.56352 * 25 24 23 27 27 C 1.34948 * 107.92607 * 359.75757 * 20 19 18 28 28 H 1.09002 * 109.47140 * 300.00483 * 1 2 3 29 29 H 1.09002 * 109.47215 * 60.00272 * 1 2 3 30 30 H 1.08995 * 109.47372 * 180.02562 * 1 2 3 31 31 H 0.96998 * 120.00124 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47030 * 89.99917 * 13 12 2 33 33 H 1.09000 * 109.46652 * 209.99917 * 13 12 2 34 34 H 1.09003 * 109.46787 * 329.99974 * 13 12 2 35 35 H 1.07998 * 125.89660 * 359.97438 * 18 17 14 36 36 H 1.08996 * 110.50804 * 237.28746 * 23 21 20 37 37 H 1.08991 * 110.51350 * 0.02562 * 23 21 20 38 38 H 1.09001 * 110.37058 * 142.80638 * 24 23 21 39 39 H 1.09004 * 110.37018 * 265.03426 * 24 23 21 40 40 H 1.08999 * 110.34517 * 281.59261 * 26 25 24 41 41 H 1.08997 * 110.50658 * 159.18416 * 26 25 24 42 42 H 1.07999 * 126.12812 * 180.24197 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4827 7 7 2.1380 -0.8589 3.5566 8 14 0.6248 1.2792 2.6541 9 1 -0.8028 0.8728 2.6998 10 1 0.8471 2.1766 1.4919 11 1 0.9759 1.9953 3.9067 12 7 2.0183 -0.6908 -1.1961 13 6 1.6643 -2.0934 -1.4278 14 16 2.9703 0.1140 -2.2862 15 8 2.8227 -0.5649 -3.5259 16 8 2.6904 1.4970 -2.1193 17 6 4.6444 -0.1185 -1.7880 18 6 5.4863 -1.1597 -2.1922 19 7 6.6485 -0.9932 -1.6147 20 7 6.5830 0.1614 -0.8242 21 6 7.6688 0.7096 -0.0077 22 1 8.3644 -0.0786 0.2800 23 6 8.4075 1.8312 -0.7718 24 6 8.1991 3.0844 0.1071 25 8 7.9537 2.5682 1.4334 26 6 7.1016 1.4147 1.2443 27 6 5.3448 0.6827 -0.9522 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.9034 -0.5277 4.4376 32 1 0.7374 -2.1446 -1.9991 33 1 2.4627 -2.5821 -1.9862 34 1 1.5294 -2.5969 -0.4706 35 1 5.2226 -1.9625 -2.8647 36 1 9.4687 1.5985 -0.8597 37 1 7.9645 1.9781 -1.7568 38 1 9.0950 3.7052 0.1013 39 1 7.3400 3.6558 -0.2445 40 1 6.0725 1.7283 1.0697 41 1 7.1562 0.7538 2.1093 42 1 4.9778 1.5773 -0.4713 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332373113.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:34 Heat of formation + Delta-G solvation = -45.653433 kcal Electronic energy + Delta-G solvation = -27578.059024 eV Core-core repulsion = 23687.003996 eV Total energy + Delta-G solvation = -3891.055029 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 5.24 seconds Orbital eigenvalues (eV) -42.60418 -40.26749 -38.28156 -37.98350 -36.81802 -34.93441 -34.48158 -31.79981 -31.75192 -31.33094 -29.56680 -27.23440 -26.91982 -24.96348 -23.53416 -22.86238 -22.51970 -21.39256 -19.97277 -19.13198 -18.80203 -18.24066 -17.69469 -17.37794 -17.09223 -16.44596 -16.35056 -16.03077 -15.92070 -15.54187 -15.30339 -14.84693 -14.48217 -14.32847 -14.20920 -14.08843 -13.80963 -13.44963 -13.40058 -13.18664 -13.06079 -13.02397 -12.89780 -12.88112 -12.66972 -12.55716 -12.19134 -12.05648 -11.96507 -11.78159 -11.42628 -11.27988 -11.02687 -10.72593 -10.70674 -10.32017 -9.66636 -8.26410 -6.29960 -0.42209 0.44211 1.13866 1.21123 1.34265 1.42296 1.49683 2.23489 2.34121 2.71838 2.89872 3.08773 3.14502 3.25142 3.31228 3.60593 3.67279 3.80773 3.89032 4.05189 4.08865 4.29609 4.39733 4.49749 4.51837 4.55264 4.66702 4.69239 4.71776 4.72723 4.82783 4.91525 4.95890 5.17986 5.27563 5.30992 5.42687 5.52194 5.58807 5.72042 5.90353 6.28734 6.37558 6.75648 7.35216 8.88843 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010664 B = 0.005843 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.911613 B = 4791.006747 C = 6370.519157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.238 3.762 3 H 0.052 0.948 4 C -0.513 4.513 5 H 0.052 0.948 6 C 0.027 3.973 7 N -0.939 5.939 8 Si 0.922 3.078 9 H -0.264 1.264 10 H -0.246 1.246 11 H -0.299 1.299 12 N -0.982 5.982 13 C 0.096 3.904 14 S 2.734 3.266 15 O -0.978 6.978 16 O -0.991 6.991 17 C -0.817 4.817 18 C 0.129 3.871 19 N -0.307 5.307 20 N -0.351 5.351 21 C 0.116 3.884 22 H 0.132 0.868 23 C -0.158 4.158 24 C 0.037 3.963 25 O -0.376 6.376 26 C 0.034 3.966 27 C 0.177 3.823 28 H 0.041 0.959 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.265 0.735 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.219 0.781 36 H 0.115 0.885 37 H 0.085 0.915 38 H 0.126 0.874 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.113 0.887 42 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.442 4.436 -9.285 13.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.133 3.867 3 H 0.069 0.931 4 C -0.553 4.553 5 H 0.070 0.930 6 C -0.172 4.172 7 N -0.579 5.579 8 Si 0.749 3.251 9 H -0.190 1.190 10 H -0.170 1.170 11 H -0.227 1.227 12 N -0.820 5.820 13 C -0.050 4.050 14 S 2.825 3.175 15 O -0.969 6.969 16 O -0.982 6.982 17 C -0.917 4.917 18 C -0.060 4.060 19 N -0.125 5.125 20 N -0.129 5.129 21 C 0.014 3.986 22 H 0.149 0.851 23 C -0.196 4.196 24 C -0.039 4.039 25 O -0.294 6.294 26 C -0.044 4.044 27 C 0.023 3.977 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.236 0.764 36 H 0.134 0.866 37 H 0.103 0.897 38 H 0.143 0.857 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.131 0.869 42 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 10.621 4.562 -9.373 14.882 hybrid contribution -0.903 0.292 0.934 1.331 sum 9.719 4.854 -8.439 13.756 Atomic orbital electron populations 1.22380 0.97186 1.02352 0.99984 1.18907 0.92243 0.92802 0.82779 0.93077 1.21374 1.31160 1.13076 0.89666 0.92987 1.25554 0.96931 0.99157 0.95532 1.70004 1.47299 1.42088 0.98516 0.86274 0.80044 0.81136 0.77647 1.18992 1.16972 1.22728 1.57139 1.64204 1.22725 1.37960 1.21472 1.01175 0.80102 1.02203 1.00356 0.72446 0.72375 0.72370 1.93495 1.86541 1.75760 1.41069 1.93487 1.84780 1.33078 1.86848 1.31642 1.26932 1.10432 1.22681 1.23906 0.88815 0.96813 0.96475 1.77307 1.22842 1.01990 1.10395 1.49303 1.09982 1.18852 1.34753 1.23106 0.87124 0.98469 0.89862 0.85055 1.23418 1.03167 0.93323 0.99695 1.23724 1.03523 0.95683 0.80989 1.89241 1.68735 1.43444 1.27992 1.23878 0.94979 0.88156 0.97405 1.22579 0.84930 0.97632 0.92543 0.94017 0.92234 0.91394 0.92576 0.91501 0.90418 0.91257 0.76415 0.86633 0.89677 0.85653 0.91276 0.91321 0.86935 0.78491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.28 8.67 71.98 0.62 -5.66 16 2 C 0.24 10.28 2.21 44.24 0.10 10.38 16 3 H 0.05 2.28 5.97 -2.39 -0.01 2.27 16 4 C -0.51 -26.09 8.57 25.60 0.22 -25.87 16 5 H 0.05 2.92 7.58 -2.91 -0.02 2.89 16 6 C 0.03 1.44 5.45 84.65 0.46 1.91 16 7 N -0.94 -54.40 13.96 21.45 0.30 -54.10 16 8 Si 0.92 41.55 24.37 68.60 1.67 43.22 16 9 H -0.26 -11.36 6.87 99.48 0.68 -10.67 16 10 H -0.25 -10.43 6.53 99.48 0.65 -9.79 16 11 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 12 N -0.98 -36.61 3.06 -520.44 -1.59 -38.20 16 13 C 0.10 3.06 9.29 127.77 1.19 4.24 16 14 S 2.73 96.72 5.78 -56.49 -0.33 96.39 16 15 O -0.98 -35.19 16.94 -128.00 -2.17 -37.36 16 16 O -0.99 -39.24 16.41 -128.00 -2.10 -41.34 16 17 C -0.82 -26.70 6.17 21.99 0.14 -26.56 16 18 C 0.13 3.86 11.81 85.24 1.01 4.87 16 19 N -0.31 -9.37 12.58 -57.02 -0.72 -10.09 16 20 N -0.35 -9.92 3.51 -322.67 -1.13 -11.05 16 21 C 0.12 2.53 4.23 46.01 0.19 2.72 16 22 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 23 C -0.16 -2.55 6.88 31.61 0.22 -2.33 16 24 C 0.04 0.59 7.64 72.49 0.55 1.15 16 25 O -0.38 -8.54 11.65 -148.98 -1.74 -10.27 16 26 C 0.03 0.80 7.21 72.48 0.52 1.32 16 27 C 0.18 5.47 10.19 83.54 0.85 6.32 16 28 H 0.04 1.69 3.27 -2.39 -0.01 1.68 16 29 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.07 2.52 7.67 -2.39 -0.02 2.50 16 31 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.08 2.11 7.79 -2.39 -0.02 2.09 16 34 H 0.07 2.42 7.02 -2.39 -0.02 2.40 16 35 H 0.22 5.12 8.06 -2.91 -0.02 5.09 16 36 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.48 7.96 -2.39 -0.02 1.46 16 38 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.07 1.75 5.98 -2.39 -0.01 1.74 16 41 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 42 H 0.20 5.52 6.90 -2.91 -0.02 5.50 16 Total: -1.00 -68.63 350.60 -0.77 -69.40 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.96 Total: 20.91 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 6.07 Total: -27.52 kcal Atomic # 7 Polarization: -110.29 SS G_CDS: -3.14 Total: -113.44 kcal Atomic # 8 Polarization: -82.97 SS G_CDS: -6.00 Total: -88.97 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 1.67 Total: 43.22 kcal Atomic # 16 Polarization: 96.72 SS G_CDS: -0.33 Total: 96.39 kcal Total: -68.63 -0.77 -69.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332373113.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.751 kcal (2) G-P(sol) polarization free energy of solvation -68.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.24 seconds