Wall clock time and date at job start Tue Mar 31 2020 07:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46892 * 2 1 4 4 C 1.50697 * 109.47285 * 120.00324 * 2 1 3 5 5 H 1.07997 * 120.00244 * 120.00097 * 4 2 1 6 6 C 1.37874 * 119.99831 * 300.00020 * 4 2 1 7 7 N 1.31520 * 120.00249 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99854 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47042 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47220 * 120.00041 * 8 6 4 11 11 H 1.48501 * 109.46600 * 239.99868 * 8 6 4 12 12 N 1.46503 * 109.46867 * 240.00751 * 2 1 3 13 13 C 1.46507 * 119.99756 * 299.99543 * 12 2 1 14 14 S 1.65592 * 120.00388 * 120.00278 * 12 2 1 15 15 O 1.42100 * 106.40216 * 336.45145 * 14 12 2 16 16 O 1.42102 * 106.40584 * 203.53496 * 14 12 2 17 17 C 1.76203 * 107.22242 * 89.99351 * 14 12 2 18 18 C 1.39869 * 126.04031 * 270.00333 * 17 14 12 19 19 N 1.30835 * 108.20052 * 179.74087 * 18 17 14 20 20 N 1.40085 * 108.20827 * 0.39874 * 19 18 17 21 21 C 1.46499 * 126.04124 * 179.85402 * 20 19 18 22 22 H 1.09000 * 110.74754 * 22.67712 * 21 20 19 23 23 C 1.55566 * 111.01500 * 259.10326 * 21 20 19 24 24 C 1.54944 * 100.82489 * 207.60490 * 23 21 20 25 25 O 1.43645 * 105.22260 * 36.43849 * 24 23 21 26 26 C 1.43235 * 109.97529 * 335.52671 * 25 24 23 27 27 C 1.34950 * 107.92306 * 359.59512 * 20 19 18 28 28 H 1.09006 * 109.47179 * 59.99468 * 1 2 3 29 29 H 1.08995 * 109.47424 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47183 * 300.00295 * 1 2 3 31 31 H 0.96995 * 119.99862 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.47066 * 270.00862 * 13 12 2 33 33 H 1.08998 * 109.46950 * 30.00094 * 13 12 2 34 34 H 1.08997 * 109.46742 * 150.00583 * 13 12 2 35 35 H 1.08001 * 125.89846 * 359.97438 * 18 17 14 36 36 H 1.08997 * 111.22347 * 89.69928 * 23 21 20 37 37 H 1.09003 * 111.13190 * 325.46525 * 23 21 20 38 38 H 1.09002 * 110.30953 * 277.47426 * 24 23 21 39 39 H 1.09000 * 110.30834 * 155.40499 * 24 23 21 40 40 H 1.08995 * 109.83514 * 121.22466 * 26 25 24 41 41 H 1.08997 * 109.82880 * 242.11056 * 26 25 24 42 42 H 1.07995 * 126.13100 * 180.21607 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4826 7 7 0.9435 0.8301 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.1475 -2.2864 3.6036 10 1 3.1473 -0.1860 4.8160 11 1 1.1678 -1.5868 4.8163 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4282 14 16 2.9703 0.1143 -2.2863 15 8 2.6903 1.4974 -2.1193 16 8 2.8227 -0.5644 -3.5260 17 6 4.6444 -0.1181 -1.7881 18 6 5.3664 0.7063 -0.9189 19 7 6.5692 0.2084 -0.7881 20 7 6.6537 -0.9453 -1.5782 21 6 7.8295 -1.8072 -1.7222 22 1 8.4966 -1.6962 -0.8674 23 6 8.5799 -1.5095 -3.0520 24 6 9.2358 -2.8854 -3.3303 25 8 8.2731 -3.8576 -2.8928 26 6 7.4107 -3.2819 -1.9046 27 6 5.4588 -1.1257 -2.1789 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.7096 1.1617 3.4844 32 1 2.4157 -2.7376 -0.9718 33 1 0.6904 -2.3001 -0.9848 34 1 1.6238 -2.2850 -2.5004 35 1 4.9940 1.5977 -0.4360 36 1 9.3345 -0.7351 -2.9145 37 1 7.8824 -1.2393 -3.8449 38 1 10.1602 -2.9858 -2.7615 39 1 9.4335 -3.0017 -4.3959 40 1 6.3756 -3.3333 -2.2419 41 1 7.5193 -3.8177 -0.9617 42 1 5.1990 -1.9299 -2.8512 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332373122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:43 Heat of formation + Delta-G solvation = -28.366501 kcal Electronic energy + Delta-G solvation = -27218.128482 eV Core-core repulsion = 23327.823071 eV Total energy + Delta-G solvation = -3890.305411 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.45519 -39.53778 -36.60973 -36.12778 -35.18648 -34.03818 -32.58573 -30.97639 -30.25911 -29.04810 -28.73466 -25.56200 -25.12124 -23.77122 -22.81462 -21.66055 -20.65576 -20.44489 -18.73774 -17.67795 -17.01455 -16.80022 -16.40149 -16.23125 -15.54448 -15.25811 -15.06011 -14.75781 -14.57698 -14.30604 -13.94022 -13.51641 -13.19504 -12.94934 -12.78805 -12.73481 -12.19138 -12.04900 -11.91798 -11.75981 -11.67041 -11.51717 -11.34151 -11.26947 -11.13360 -10.98553 -10.81921 -10.44921 -10.40686 -10.23488 -10.09303 -10.01324 -9.50277 -9.27756 -9.03808 -8.47383 -7.92493 -6.08480 -4.16187 1.11973 1.59981 2.17148 2.53995 3.23852 3.29673 3.32615 3.34813 3.80689 3.85487 4.06739 4.35422 4.36680 4.37860 4.44410 4.54251 4.65371 4.78519 5.07138 5.13489 5.20505 5.22356 5.26493 5.32344 5.48268 5.58178 5.72230 5.75302 6.18194 6.34195 6.36244 6.54311 6.65593 6.76108 6.85538 6.90594 7.11900 7.48995 7.52175 7.65133 7.79986 8.05858 8.27618 8.87269 9.50258 10.96558 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.012998 B = 0.004493 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.674714 B = 6230.553604 C = 7275.074856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.267 3.733 3 H 0.062 0.938 4 C -0.522 4.522 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.981 5.981 13 C 0.098 3.902 14 S 2.716 3.284 15 O -0.960 6.960 16 O -0.984 6.984 17 C -0.794 4.794 18 C 0.150 3.850 19 N -0.295 5.295 20 N -0.360 5.360 21 C 0.124 3.876 22 H 0.124 0.876 23 C -0.169 4.169 24 C 0.052 3.948 25 O -0.373 6.373 26 C 0.040 3.960 27 C 0.166 3.834 28 H 0.014 0.986 29 H 0.033 0.967 30 H 0.094 0.906 31 H 0.263 0.737 32 H 0.041 0.959 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.201 0.799 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.674 -6.574 -9.749 17.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.080 0.920 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.821 5.821 13 C -0.048 4.048 14 S 2.803 3.197 15 O -0.950 6.950 16 O -0.975 6.975 17 C -0.891 4.891 18 C -0.040 4.040 19 N -0.113 5.113 20 N -0.139 5.139 21 C 0.020 3.980 22 H 0.142 0.858 23 C -0.207 4.207 24 C -0.024 4.024 25 O -0.291 6.291 26 C -0.038 4.038 27 C 0.014 3.986 28 H 0.033 0.967 29 H 0.052 0.948 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.217 0.783 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.113 0.887 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 13.647 -6.163 -9.830 17.913 hybrid contribution 0.151 -0.648 1.281 1.444 sum 13.798 -6.811 -8.548 17.603 Atomic orbital electron populations 1.22073 0.97872 0.99659 1.00946 1.18770 0.91853 0.92876 0.80109 0.92028 1.21410 1.31602 1.13010 0.90183 0.92070 1.24891 0.94989 0.94968 0.98867 1.69883 1.36372 1.22590 1.23647 0.86527 0.78614 0.79616 0.83110 1.20030 1.20996 1.20967 1.57392 1.63220 1.21504 1.39967 1.21284 1.01876 0.81701 0.99960 1.01092 0.72378 0.73443 0.72740 1.93541 1.83718 1.31402 1.86384 1.93479 1.86354 1.76052 1.41567 1.32029 1.27687 1.08313 1.21030 1.23599 0.89362 0.98036 0.92980 1.77423 1.21103 0.97655 1.15156 1.48936 1.09475 1.20795 1.34651 1.22940 0.85608 0.88747 1.00662 0.85824 1.23805 1.01093 0.99241 0.96581 1.23390 0.92056 0.85773 1.01210 1.88497 1.46190 1.36512 1.57932 1.23537 0.95811 0.90649 0.93756 1.22286 0.84744 0.97279 0.94249 0.96658 0.94813 0.88798 0.92714 0.94044 0.90399 0.91854 0.78282 0.88402 0.89188 0.91265 0.88685 0.89788 0.89264 0.79663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.95 37.16 0.33 -3.05 16 2 C 0.27 6.35 2.62 -69.08 -0.18 6.17 16 3 H 0.06 1.61 6.91 -51.93 -0.36 1.25 16 4 C -0.52 -13.28 8.37 -34.44 -0.29 -13.57 16 5 H 0.06 1.54 7.65 -52.49 -0.40 1.14 16 6 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.05 11.32 55.43 0.63 -23.42 16 8 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.98 -19.77 3.06 -115.85 -0.35 -20.13 16 13 C 0.10 1.67 9.90 59.85 0.59 2.27 16 14 S 2.72 52.03 5.83 -107.50 -0.63 51.41 16 15 O -0.96 -21.13 16.44 -57.17 -0.94 -22.07 16 16 O -0.98 -18.97 16.45 -57.17 -0.94 -19.91 16 17 C -0.79 -13.65 6.17 -40.01 -0.25 -13.89 16 18 C 0.15 2.61 11.82 -17.37 -0.21 2.41 16 19 N -0.30 -4.90 12.58 30.62 0.39 -4.51 16 20 N -0.36 -4.98 3.65 -52.84 -0.19 -5.17 16 21 C 0.12 1.23 4.11 -65.84 -0.27 0.96 16 22 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 23 C -0.17 -1.32 6.87 -24.34 -0.17 -1.49 16 24 C 0.05 0.36 7.77 38.18 0.30 0.65 16 25 O -0.37 -3.61 11.36 -35.23 -0.40 -4.01 16 26 C 0.04 0.37 7.42 37.88 0.28 0.66 16 27 C 0.17 2.39 10.16 -17.22 -0.17 2.22 16 28 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.03 0.72 6.66 -51.93 -0.35 0.38 16 30 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 31 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.32 6.43 -51.93 -0.33 0.99 16 34 H 0.06 0.96 7.02 -51.93 -0.36 0.59 16 35 H 0.20 3.29 8.06 -52.49 -0.42 2.86 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.79 6.02 -51.93 -0.31 0.47 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.19 2.10 7.03 -52.49 -0.37 1.73 16 LS Contribution 356.28 15.07 5.37 5.37 Total: -1.00 -32.42 356.28 -7.96 -40.38 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.74 Total: 1.62 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -0.13 Total: -15.05 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.47 Total: -53.23 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -2.28 Total: -45.99 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 52.03 SS G_CDS: -0.63 Total: 51.41 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.42 -7.96 -40.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332373122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.011 kcal (2) G-P(sol) polarization free energy of solvation -32.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds