Wall clock time and date at job start Tue Mar 31 2020 06:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00128 * 2 1 4 4 H 1.48501 * 109.46992 * 270.00094 * 3 2 1 5 5 H 1.48497 * 109.47333 * 30.00046 * 3 2 1 6 6 H 1.48499 * 109.47124 * 150.00396 * 3 2 1 7 7 C 1.37877 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99916 * 0.02562 * 7 2 1 9 9 C 1.50692 * 120.00063 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47413 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47557 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.47466 * 180.02562 * 11 10 9 13 13 S 1.65592 * 120.00264 * 165.00450 * 12 11 10 14 14 O 1.42104 * 106.40012 * 311.45486 * 13 12 11 15 15 O 1.42102 * 106.40335 * 178.53953 * 13 12 11 16 16 C 1.76197 * 107.22325 * 64.99383 * 13 12 11 17 17 C 1.39866 * 126.04208 * 270.00631 * 16 13 12 18 18 N 1.30838 * 108.20372 * 179.73492 * 17 16 13 19 19 N 1.40087 * 108.20553 * 0.40323 * 18 17 16 20 20 C 1.46501 * 126.04196 * 179.85100 * 19 18 17 21 21 H 1.09004 * 110.98474 * 28.88618 * 20 19 18 22 22 C 1.55300 * 111.12683 * 264.69334 * 20 19 18 23 23 C 1.54377 * 102.25502 * 207.94553 * 22 20 19 24 24 O 1.43245 * 107.58529 * 21.35358 * 23 22 20 25 25 C 1.43641 * 109.97106 * 1.71442 * 24 23 22 26 26 C 1.34954 * 107.92252 * 359.59042 * 19 18 17 27 27 H 0.97002 * 119.99615 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47457 * 60.00472 * 9 7 2 29 29 H 1.08998 * 109.47664 * 299.99891 * 9 7 2 30 30 H 1.09011 * 109.46637 * 59.99849 * 10 9 7 31 31 H 1.08999 * 109.47131 * 300.00887 * 10 9 7 32 32 H 1.08997 * 109.47300 * 60.00058 * 11 10 9 33 33 H 1.09006 * 109.47257 * 300.00580 * 11 10 9 34 34 H 0.97004 * 119.99602 * 344.99722 * 12 11 10 35 35 H 1.08000 * 125.89778 * 359.97438 * 17 16 13 36 36 H 1.09006 * 110.85287 * 89.75179 * 22 20 19 37 37 H 1.09004 * 111.02471 * 326.21329 * 22 20 19 38 38 H 1.09000 * 109.83189 * 261.84669 * 23 22 20 39 39 H 1.09004 * 109.91014 * 140.91129 * 23 22 20 40 40 H 1.08997 * 110.30942 * 94.48681 * 25 24 23 41 41 H 1.08999 * 110.30828 * 216.65652 * 25 24 23 42 42 H 1.07994 * 126.12518 * 180.26696 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.6999 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6367 0.0014 11 6 5.5514 -2.6368 0.0014 12 7 6.0398 -4.0180 0.0022 13 16 7.6217 -4.3372 -0.3687 14 8 7.9063 -3.6210 -1.5626 15 8 7.7864 -5.7434 -0.2480 16 6 8.6108 -3.6101 0.8953 17 6 9.1269 -2.3101 0.8908 18 7 9.8021 -2.1346 1.9977 19 7 9.7446 -3.3222 2.7384 20 6 10.3713 -3.5564 4.0418 21 1 10.4537 -2.6284 4.6077 22 6 11.7569 -4.2394 3.8820 23 6 11.8919 -5.0203 5.2068 24 8 10.5743 -5.2008 5.7391 25 6 9.6024 -4.6352 4.8453 26 6 9.0051 -4.2107 2.0420 27 1 -0.4850 0.8401 0.0004 28 1 3.8752 -0.6798 0.8895 29 1 3.8746 -0.6810 -0.8905 30 1 3.6577 -3.1515 -0.8880 31 1 3.6584 -3.1495 0.8920 32 1 5.9148 -2.1221 0.8909 33 1 5.9149 -2.1237 -0.8890 34 1 5.4363 -4.7456 0.2200 35 1 8.9885 -1.5765 0.1104 36 1 12.5478 -3.4952 3.7880 37 1 11.7622 -4.9183 3.0293 38 1 12.5003 -4.4523 5.9106 39 1 12.3516 -5.9910 5.0203 40 1 9.2142 -5.4016 4.1745 41 1 8.7896 -4.1787 5.4101 42 1 8.7698 -5.2200 2.3456 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332376642.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:29 Heat of formation + Delta-G solvation = -46.237589 kcal Electronic energy + Delta-G solvation = -25680.866248 eV Core-core repulsion = 21789.785889 eV Total energy + Delta-G solvation = -3891.080359 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -41.92357 -39.85992 -37.18874 -36.07176 -35.79797 -34.41460 -33.20892 -31.34044 -31.16655 -30.74334 -29.09682 -26.80369 -24.30340 -22.99263 -22.79494 -22.10506 -20.96054 -20.46327 -19.43031 -18.55935 -17.41295 -17.28440 -16.87447 -16.54042 -15.90916 -15.82346 -15.49482 -15.28284 -14.77979 -14.57840 -14.57102 -14.31612 -14.04037 -13.45060 -13.14442 -12.89774 -12.47017 -12.42836 -12.34095 -12.31631 -12.13937 -12.00383 -11.96022 -11.70382 -11.66361 -11.13012 -10.99721 -10.89637 -10.30849 -10.10680 -10.03232 -9.86921 -9.72695 -9.60892 -9.31398 -9.21341 -8.55803 -6.06326 -4.04913 0.46324 1.10794 1.71353 1.97419 3.04175 3.17650 3.30324 3.37836 3.40211 3.57749 3.71348 3.81842 3.95460 4.08577 4.20553 4.30696 4.39010 4.43504 4.59591 4.85129 4.90301 5.02560 5.06379 5.08981 5.18506 5.23519 5.27100 5.27874 5.56426 5.80907 5.95913 5.99987 6.10123 6.29811 6.42576 6.58915 6.77614 7.01728 7.08635 7.23187 7.36264 7.75949 8.50741 8.98254 9.55777 11.07018 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014182 B = 0.002798 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.883548 B =10004.830464 C =10885.970432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.108 4.108 11 C 0.112 3.888 12 N -1.114 6.114 13 S 2.726 3.274 14 O -0.957 6.957 15 O -0.972 6.972 16 C -0.808 4.808 17 C 0.137 3.863 18 N -0.287 5.287 19 N -0.353 5.353 20 C 0.119 3.881 21 H 0.128 0.872 22 C -0.168 4.168 23 C 0.051 3.949 24 O -0.369 6.369 25 C 0.043 3.957 26 C 0.175 3.825 27 H 0.263 0.737 28 H 0.017 0.983 29 H 0.016 0.984 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.418 0.582 35 H 0.202 0.798 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.187 -10.178 9.239 28.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.090 0.910 9 C -0.052 4.052 10 C -0.147 4.147 11 C -0.014 4.014 12 N -0.875 5.875 13 S 2.812 3.188 14 O -0.947 6.947 15 O -0.962 6.962 16 C -0.906 4.906 17 C -0.052 4.052 18 N -0.104 5.104 19 N -0.131 5.131 20 C 0.016 3.984 21 H 0.146 0.854 22 C -0.207 4.207 23 C -0.025 4.025 24 O -0.287 6.287 25 C -0.035 4.035 26 C 0.022 3.978 27 H 0.073 0.927 28 H 0.036 0.964 29 H 0.034 0.966 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.252 0.748 35 H 0.219 0.781 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.124 0.876 42 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 26.251 -9.632 9.570 29.555 hybrid contribution -0.215 0.633 0.087 0.674 sum 26.036 -8.999 9.657 29.191 Atomic orbital electron populations 1.69918 1.06328 1.26923 1.51045 1.25042 0.94747 0.99233 0.94537 0.86773 0.80312 0.83559 0.78604 1.20179 1.21465 1.18969 1.21107 0.89363 0.94511 1.50961 0.90978 1.19552 0.97361 0.91704 0.96600 1.21666 0.90254 1.00709 1.02093 1.21580 0.98459 0.79773 1.01539 1.55491 1.27771 1.15808 1.88431 1.00858 0.72081 0.72598 0.73246 1.93579 1.84207 1.74625 1.42289 1.93557 1.85864 1.29534 1.87255 1.31804 1.30391 1.08106 1.20283 1.23667 0.92066 0.94243 0.95256 1.77494 1.24025 1.02921 1.06001 1.48970 1.38540 1.09625 1.15954 1.23160 0.92871 1.01735 0.80585 0.85407 1.23596 0.96829 1.00674 0.99563 1.23165 0.85257 1.00484 0.93627 1.88529 1.15200 1.79992 1.44998 1.23749 0.92476 0.94118 0.93116 1.22426 0.89448 0.96219 0.89705 0.92718 0.96428 0.96599 0.91732 0.92051 0.92261 0.90438 0.74768 0.78127 0.88386 0.89360 0.90150 0.90236 0.90701 0.87583 0.79152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 2 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.32 27.47 -169.99 -4.67 16.65 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 7 C -0.52 -14.46 9.66 -34.44 -0.33 -14.79 16 8 H 0.07 2.14 7.99 -52.48 -0.42 1.73 16 9 C -0.01 -0.31 4.04 -27.89 -0.11 -0.43 16 10 C -0.11 -1.93 5.29 -26.73 -0.14 -2.07 16 11 C 0.11 1.60 6.22 -4.04 -0.03 1.57 16 12 N -1.11 -13.34 6.00 -10.61 -0.06 -13.40 16 13 S 2.73 33.40 5.88 -107.50 -0.63 32.77 16 14 O -0.96 -14.61 17.34 -57.17 -0.99 -15.60 16 15 O -0.97 -13.39 17.85 -57.17 -1.02 -14.41 16 16 C -0.81 -8.84 6.14 -40.01 -0.25 -9.08 16 17 C 0.14 1.55 11.81 -17.37 -0.21 1.35 16 18 N -0.29 -3.33 12.58 30.62 0.39 -2.94 16 19 N -0.35 -3.28 3.68 -52.69 -0.19 -3.48 16 20 C 0.12 0.78 4.26 -65.69 -0.28 0.50 16 21 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 22 C -0.17 -0.85 6.72 -24.79 -0.17 -1.01 16 23 C 0.05 0.24 7.79 37.88 0.30 0.54 16 24 O -0.37 -2.63 11.36 -35.23 -0.40 -3.03 16 25 C 0.04 0.25 7.15 38.18 0.27 0.53 16 26 C 0.17 1.61 10.33 -17.22 -0.18 1.43 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 29 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 30 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.11 7.75 -51.93 -0.40 0.70 16 34 H 0.42 4.33 8.65 -34.47 -0.30 4.03 16 35 H 0.20 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.38 6.20 -51.93 -0.32 0.06 16 41 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.19 1.18 6.75 -52.49 -0.35 0.82 16 LS Contribution 363.52 15.07 5.48 5.48 Total: -1.00 -36.44 363.52 -8.51 -44.94 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.96 Total: -0.51 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -1.22 Total: -19.69 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.90 Total: -46.60 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -2.41 Total: -33.05 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Atomic # 16 Polarization: 33.40 SS G_CDS: -0.63 Total: 32.77 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.44 -8.51 -44.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332376642.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.293 kcal (2) G-P(sol) polarization free energy of solvation -36.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds