Wall clock time and date at job start Tue Mar 31 2020 06:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00017 * 2 1 4 4 H 1.48509 * 109.47011 * 240.00292 * 3 2 1 5 5 H 1.48491 * 109.47449 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46939 * 120.00398 * 3 2 1 7 7 C 1.37880 * 119.99692 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99783 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47199 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.46845 * 179.97438 * 11 10 9 13 13 S 1.65604 * 119.99578 * 164.99744 * 12 11 10 14 14 O 1.42101 * 106.40482 * 311.45954 * 13 12 11 15 15 O 1.42100 * 106.39750 * 178.54186 * 13 12 11 16 16 C 1.76196 * 107.21811 * 64.99977 * 13 12 11 17 17 C 1.39875 * 126.03760 * 89.97473 * 16 13 12 18 18 N 1.30839 * 108.20184 * 180.02562 * 17 16 13 19 19 N 1.40085 * 108.20364 * 0.02562 * 18 17 16 20 20 C 1.46506 * 126.03688 * 180.02562 * 19 18 17 21 21 H 1.09006 * 110.45444 * 334.29518 * 20 19 18 22 22 C 1.54509 * 110.51020 * 96.90323 * 20 19 18 23 23 C 1.54481 * 104.06178 * 118.64750 * 22 20 19 24 24 O 1.44425 * 104.80488 * 23.97400 * 23 22 20 25 25 C 1.44646 * 105.36967 * 319.56747 * 24 23 22 26 26 C 1.34949 * 107.93019 * 359.97438 * 19 18 17 27 27 H 0.97003 * 119.99924 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47218 * 59.99641 * 9 7 2 29 29 H 1.09004 * 109.47160 * 300.00003 * 9 7 2 30 30 H 1.08996 * 109.47272 * 59.99877 * 10 9 7 31 31 H 1.09004 * 109.46877 * 299.99968 * 10 9 7 32 32 H 1.08996 * 109.47334 * 59.99638 * 11 10 9 33 33 H 1.09004 * 109.46954 * 299.99645 * 11 10 9 34 34 H 0.96997 * 120.00491 * 345.00206 * 12 11 10 35 35 H 1.08003 * 125.89835 * 359.75947 * 17 16 13 36 36 H 1.09000 * 110.50544 * 237.29105 * 22 20 19 37 37 H 1.08991 * 110.51191 * 359.97438 * 22 20 19 38 38 H 1.08999 * 110.37135 * 142.80427 * 23 22 20 39 39 H 1.08995 * 110.36689 * 265.03188 * 23 22 20 40 40 H 1.09001 * 110.34118 * 281.59349 * 25 24 23 41 41 H 1.08995 * 110.50639 * 159.18336 * 25 24 23 42 42 H 1.07998 * 126.13002 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 7 2.4320 -6.1007 -0.0018 13 16 1.9171 -7.6304 0.3687 14 8 1.1541 -7.5189 1.5623 15 8 3.0526 -8.4761 0.2483 16 6 0.7933 -8.1230 -0.8958 17 6 1.1277 -8.7859 -2.0813 18 7 0.0290 -8.9803 -2.7647 19 7 -1.0407 -8.4459 -2.0348 20 6 -2.4486 -8.4515 -2.4399 21 1 -2.5325 -8.4997 -3.5256 22 6 -3.1953 -9.6357 -1.7860 23 6 -4.2838 -8.9617 -0.9215 24 8 -4.4922 -7.6694 -1.5318 25 6 -3.1733 -7.2003 -1.8960 26 6 -0.5454 -7.9261 -0.8922 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 2.8717 -3.6045 0.8894 31 1 2.8717 -3.6044 -0.8906 32 1 0.8536 -5.0446 -0.8913 33 1 0.8531 -5.0451 0.8886 34 1 3.3639 -5.9420 -0.2191 35 1 2.1217 -9.0819 -2.3827 36 1 -3.6504 -10.2679 -2.5485 37 1 -2.5169 -10.2171 -1.1619 38 1 -5.2037 -9.5458 -0.9463 39 1 -3.9356 -8.8467 0.1050 40 1 -2.6540 -6.8119 -1.0199 41 1 -3.2403 -6.4347 -2.6689 42 1 -1.1153 -7.4395 -0.1145 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332376643.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:47 Heat of formation + Delta-G solvation = -49.483443 kcal Electronic energy + Delta-G solvation = -25945.091622 eV Core-core repulsion = 22053.870512 eV Total energy + Delta-G solvation = -3891.221110 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.85812 -39.64222 -37.11345 -35.96072 -35.73285 -34.24942 -33.24408 -31.11677 -30.86293 -30.62243 -28.91333 -26.39336 -24.27601 -23.03320 -22.92356 -22.03326 -20.72497 -20.54936 -19.32702 -18.40833 -17.27704 -17.07691 -16.60168 -16.46419 -15.80827 -15.68904 -15.30160 -15.17775 -14.87338 -14.57506 -14.49608 -14.30092 -13.76151 -13.41605 -12.83850 -12.53329 -12.41403 -12.35115 -12.14943 -12.09703 -12.01697 -11.97002 -11.89206 -11.54429 -11.48345 -10.94204 -10.84915 -10.77040 -10.58918 -10.42252 -9.94631 -9.93947 -9.56445 -9.45689 -9.26135 -9.12063 -8.39034 -6.04562 -4.07056 0.54526 1.21861 1.85274 2.04194 3.25463 3.30400 3.31225 3.35917 3.38372 3.79909 3.84309 3.89474 4.07430 4.20835 4.36552 4.42761 4.44849 4.55122 4.68537 4.97694 5.09710 5.14835 5.17842 5.23005 5.26509 5.29829 5.31679 5.35772 5.64090 5.92668 6.02706 6.06520 6.07798 6.42003 6.55356 6.75109 6.94696 7.09977 7.17772 7.59671 7.72579 7.94131 8.36249 8.99229 9.57330 11.06691 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010944 B = 0.003231 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.826582 B = 8664.099679 C =10501.402259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.116 4.116 11 C 0.115 3.885 12 N -1.114 6.114 13 S 2.726 3.274 14 O -0.964 6.964 15 O -0.968 6.968 16 C -0.809 4.809 17 C 0.136 3.864 18 N -0.290 5.290 19 N -0.353 5.353 20 C 0.120 3.880 21 H 0.125 0.875 22 C -0.168 4.168 23 C 0.041 3.959 24 O -0.359 6.359 25 C 0.034 3.966 26 C 0.176 3.824 27 H 0.261 0.739 28 H 0.017 0.983 29 H 0.020 0.980 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.417 0.583 35 H 0.199 0.801 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.116 0.884 42 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.611 -20.599 -4.342 21.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.155 4.155 11 C -0.011 4.011 12 N -0.875 5.875 13 S 2.812 3.188 14 O -0.954 6.954 15 O -0.958 6.958 16 C -0.907 4.907 17 C -0.054 4.054 18 N -0.108 5.108 19 N -0.131 5.131 20 C 0.017 3.983 21 H 0.143 0.857 22 C -0.207 4.207 23 C -0.036 4.036 24 O -0.277 6.277 25 C -0.044 4.044 26 C 0.023 3.977 27 H 0.071 0.929 28 H 0.036 0.964 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.252 0.748 35 H 0.216 0.784 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.134 0.866 42 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -6.661 -21.409 -4.792 22.928 hybrid contribution 0.963 1.334 -0.092 1.648 sum -5.698 -20.075 -4.884 21.432 Atomic orbital electron populations 1.69944 1.06046 1.26797 1.50637 1.25015 0.94863 0.99279 0.95240 0.86645 0.79575 0.83061 0.78637 1.20266 1.21300 1.20205 1.21182 0.93046 0.90950 1.50903 0.92645 1.19069 0.93941 0.91076 0.97503 1.21849 0.99637 0.92716 1.01337 1.21547 0.91398 0.86875 1.01251 1.55506 1.19360 1.24220 1.88411 1.00830 0.72831 0.72020 0.73073 1.93573 1.72883 1.86260 1.42658 1.93555 1.49477 1.65637 1.87143 1.31768 1.09571 1.27349 1.22017 1.23571 0.98340 0.93604 0.89878 1.77448 0.93572 1.20795 1.18963 1.49197 1.06998 1.42729 1.14218 1.22920 0.75434 0.97114 1.02785 0.85743 1.23443 0.98547 0.97729 1.00931 1.23528 0.99320 0.84258 0.96513 1.89285 1.25168 1.33794 1.79405 1.23933 0.84069 0.95028 1.01372 1.22462 0.93222 0.92176 0.89855 0.92901 0.96436 0.96193 0.92292 0.92589 0.92494 0.90588 0.74816 0.78387 0.88637 0.89246 0.87980 0.91299 0.90468 0.86629 0.79121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.12 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.25 9.11 -34.44 -0.31 -14.57 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.12 -2.16 5.29 -26.73 -0.14 -2.30 16 11 C 0.11 1.72 6.22 -4.04 -0.03 1.70 16 12 N -1.11 -14.16 6.00 -10.61 -0.06 -14.22 16 13 S 2.73 35.12 5.88 -107.50 -0.63 34.49 16 14 O -0.96 -14.95 17.32 -57.17 -0.99 -15.94 16 15 O -0.97 -14.25 17.87 -57.17 -1.02 -15.27 16 16 C -0.81 -9.40 6.14 -40.01 -0.25 -9.64 16 17 C 0.14 1.53 11.82 -17.36 -0.21 1.33 16 18 N -0.29 -3.45 12.58 30.63 0.39 -3.06 16 19 N -0.35 -3.62 3.51 -53.33 -0.19 -3.81 16 20 C 0.12 0.93 4.23 -66.36 -0.28 0.65 16 21 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 22 C -0.17 -1.05 6.88 -25.16 -0.17 -1.22 16 23 C 0.04 0.26 7.64 37.93 0.29 0.55 16 24 O -0.36 -3.20 11.65 -35.23 -0.41 -3.61 16 25 C 0.03 0.27 7.21 37.94 0.27 0.54 16 26 C 0.18 1.86 10.20 -17.22 -0.18 1.68 16 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.15 7.75 -51.93 -0.40 0.75 16 34 H 0.42 4.65 8.65 -34.47 -0.30 4.35 16 35 H 0.20 1.73 8.06 -52.48 -0.42 1.30 16 36 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.61 7.96 -51.93 -0.41 0.20 16 38 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.59 5.97 -51.93 -0.31 0.28 16 41 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.19 1.60 6.89 -52.49 -0.36 1.23 16 LS Contribution 366.88 15.07 5.53 5.53 Total: -1.00 -35.35 366.88 -8.89 -44.24 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -5.98 Total: 0.26 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -1.23 Total: -19.39 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.87 Total: -46.47 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -2.42 Total: -34.82 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 35.12 SS G_CDS: -0.63 Total: 34.49 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.35 -8.89 -44.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332376643.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.242 kcal (2) G-P(sol) polarization free energy of solvation -35.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds