Wall clock time and date at job start Tue Mar 31 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00017 * 2 1 4 4 H 1.48509 * 109.47011 * 240.00292 * 3 2 1 5 5 H 1.48491 * 109.47449 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46939 * 120.00398 * 3 2 1 7 7 C 1.37880 * 119.99692 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99783 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47199 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.46845 * 179.97438 * 11 10 9 13 13 S 1.65604 * 119.99578 * 164.99744 * 12 11 10 14 14 O 1.42101 * 106.40482 * 311.45954 * 13 12 11 15 15 O 1.42100 * 106.39750 * 178.54186 * 13 12 11 16 16 C 1.76196 * 107.21811 * 64.99977 * 13 12 11 17 17 C 1.39875 * 126.03760 * 89.97473 * 16 13 12 18 18 N 1.30839 * 108.20184 * 180.02562 * 17 16 13 19 19 N 1.40085 * 108.20364 * 0.02562 * 18 17 16 20 20 C 1.46506 * 126.03688 * 180.02562 * 19 18 17 21 21 H 1.09006 * 110.45444 * 334.29518 * 20 19 18 22 22 C 1.54509 * 110.51020 * 96.90323 * 20 19 18 23 23 C 1.54481 * 104.06178 * 118.64750 * 22 20 19 24 24 O 1.44425 * 104.80488 * 23.97400 * 23 22 20 25 25 C 1.44646 * 105.36967 * 319.56747 * 24 23 22 26 26 C 1.34949 * 107.93019 * 359.97438 * 19 18 17 27 27 H 0.97003 * 119.99924 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47218 * 59.99641 * 9 7 2 29 29 H 1.09004 * 109.47160 * 300.00003 * 9 7 2 30 30 H 1.08996 * 109.47272 * 59.99877 * 10 9 7 31 31 H 1.09004 * 109.46877 * 299.99968 * 10 9 7 32 32 H 1.08996 * 109.47334 * 59.99638 * 11 10 9 33 33 H 1.09004 * 109.46954 * 299.99645 * 11 10 9 34 34 H 0.96997 * 120.00491 * 345.00206 * 12 11 10 35 35 H 1.08003 * 125.89835 * 359.75947 * 17 16 13 36 36 H 1.09000 * 110.50544 * 237.29105 * 22 20 19 37 37 H 1.08991 * 110.51191 * 359.97438 * 22 20 19 38 38 H 1.08999 * 110.37135 * 142.80427 * 23 22 20 39 39 H 1.08995 * 110.36689 * 265.03188 * 23 22 20 40 40 H 1.09001 * 110.34118 * 281.59349 * 25 24 23 41 41 H 1.08995 * 110.50639 * 159.18336 * 25 24 23 42 42 H 1.07998 * 126.13002 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 7 2.4320 -6.1007 -0.0018 13 16 1.9171 -7.6304 0.3687 14 8 1.1541 -7.5189 1.5623 15 8 3.0526 -8.4761 0.2483 16 6 0.7933 -8.1230 -0.8958 17 6 1.1277 -8.7859 -2.0813 18 7 0.0290 -8.9803 -2.7647 19 7 -1.0407 -8.4459 -2.0348 20 6 -2.4486 -8.4515 -2.4399 21 1 -2.5325 -8.4997 -3.5256 22 6 -3.1953 -9.6357 -1.7860 23 6 -4.2838 -8.9617 -0.9215 24 8 -4.4922 -7.6694 -1.5318 25 6 -3.1733 -7.2003 -1.8960 26 6 -0.5454 -7.9261 -0.8922 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 2.8717 -3.6045 0.8894 31 1 2.8717 -3.6044 -0.8906 32 1 0.8536 -5.0446 -0.8913 33 1 0.8531 -5.0451 0.8886 34 1 3.3639 -5.9420 -0.2191 35 1 2.1217 -9.0819 -2.3827 36 1 -3.6504 -10.2679 -2.5485 37 1 -2.5169 -10.2171 -1.1619 38 1 -5.2037 -9.5458 -0.9463 39 1 -3.9356 -8.8467 0.1050 40 1 -2.6540 -6.8119 -1.0199 41 1 -3.2403 -6.4347 -2.6689 42 1 -1.1153 -7.4395 -0.1145 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332376643.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:39 Heat of formation + Delta-G solvation = -76.502321 kcal Electronic energy + Delta-G solvation = -25946.263249 eV Core-core repulsion = 22053.870512 eV Total energy + Delta-G solvation = -3892.392737 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 9.66 seconds Orbital eigenvalues (eV) -42.65298 -40.26422 -38.25187 -37.31155 -36.87322 -35.12454 -34.94808 -32.58156 -31.83662 -31.36947 -29.56520 -28.15347 -24.96973 -24.72917 -23.53745 -22.90448 -22.15905 -21.40627 -20.34478 -19.29960 -18.51642 -18.29827 -17.68087 -17.37005 -16.98648 -16.46375 -16.36740 -16.12374 -16.03692 -15.86203 -15.66077 -15.35967 -14.32662 -14.28131 -14.21414 -14.00608 -13.71742 -13.44410 -13.21191 -13.14716 -13.07872 -13.03258 -12.91525 -12.74225 -12.55310 -12.49843 -12.30150 -12.05294 -11.82699 -11.62559 -11.35806 -11.12771 -11.00618 -10.76716 -10.50366 -10.43530 -10.31506 -8.16411 -6.25985 -0.49524 0.38349 1.10869 1.17619 1.43575 1.45382 1.53097 2.21539 2.44570 2.72412 2.85343 3.13282 3.17648 3.25582 3.31886 3.60419 3.68595 3.81260 3.88436 4.05517 4.11184 4.28659 4.32095 4.35382 4.50782 4.53062 4.59145 4.66815 4.73088 4.76507 4.83475 5.03830 5.24069 5.24755 5.28380 5.43953 5.58164 5.70101 5.80700 5.90615 6.15884 6.26556 6.29745 6.90951 7.42845 8.94848 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010944 B = 0.003231 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.826582 B = 8664.099679 C =10501.402259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.960 3.040 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.022 3.978 10 C -0.106 4.106 11 C 0.123 3.877 12 N -1.109 6.109 13 S 2.750 3.250 14 O -0.991 6.991 15 O -0.984 6.984 16 C -0.818 4.818 17 C 0.131 3.869 18 N -0.309 5.309 19 N -0.349 5.349 20 C 0.115 3.885 21 H 0.132 0.868 22 C -0.160 4.160 23 C 0.038 3.962 24 O -0.378 6.378 25 C 0.032 3.968 26 C 0.173 3.827 27 H 0.263 0.737 28 H 0.000 1.000 29 H -0.003 1.003 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.426 0.574 35 H 0.219 0.781 36 H 0.110 0.890 37 H 0.084 0.916 38 H 0.119 0.881 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.119 0.881 42 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.195 -21.043 -4.820 22.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.785 3.215 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.581 4.581 8 H 0.079 0.921 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.003 4.003 12 N -0.870 5.870 13 S 2.838 3.162 14 O -0.981 6.981 15 O -0.975 6.975 16 C -0.918 4.918 17 C -0.058 4.058 18 N -0.128 5.128 19 N -0.127 5.127 20 C 0.014 3.986 21 H 0.150 0.850 22 C -0.199 4.199 23 C -0.039 4.039 24 O -0.296 6.296 25 C -0.046 4.046 26 C 0.019 3.981 27 H 0.071 0.929 28 H 0.019 0.981 29 H 0.016 0.984 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.262 0.738 35 H 0.235 0.765 36 H 0.129 0.871 37 H 0.103 0.897 38 H 0.137 0.863 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.137 0.863 42 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -6.214 -21.862 -5.265 23.330 hybrid contribution 0.775 1.428 0.038 1.625 sum -5.440 -20.434 -5.227 21.782 Atomic orbital electron populations 1.70070 1.07606 1.27697 1.51744 1.25904 0.95730 1.03089 0.94938 0.85584 0.78324 0.78557 0.79077 1.19269 1.21087 1.19405 1.21690 0.93634 0.92438 1.50347 0.92138 1.18983 0.94488 0.92560 0.95525 1.21624 0.98571 0.92467 1.01827 1.21305 0.91305 0.85748 1.01926 1.55297 1.19631 1.23576 1.88497 0.99889 0.72234 0.71426 0.72610 1.93538 1.73379 1.86555 1.44594 1.93530 1.50511 1.65952 1.87471 1.31503 1.09735 1.28582 1.21980 1.23965 0.99144 0.93158 0.89548 1.77414 0.94085 1.21553 1.19702 1.49371 1.07569 1.41926 1.13814 1.23135 0.74294 0.97835 1.03373 0.85035 1.23415 0.98168 0.97165 1.01114 1.23691 1.00231 0.83486 0.96470 1.89266 1.25668 1.34983 1.79721 1.23969 0.83869 0.95181 1.01538 1.22805 0.93223 0.91782 0.90297 0.92868 0.98148 0.98415 0.92215 0.91657 0.91204 0.90779 0.73802 0.76499 0.87124 0.89731 0.86257 0.91039 0.90477 0.86276 0.77402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.91 13.29 21.45 0.28 -54.62 16 2 C 0.00 0.07 5.46 84.66 0.46 0.54 16 3 Si 0.96 43.19 29.54 68.60 2.03 45.21 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.54 -29.62 9.11 25.60 0.23 -29.38 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.02 1.10 4.97 29.85 0.15 1.24 16 10 C -0.11 -3.85 5.29 30.59 0.16 -3.69 16 11 C 0.12 3.57 6.22 86.38 0.54 4.11 16 12 N -1.11 -26.64 6.00 -187.48 -1.12 -27.76 16 13 S 2.75 67.87 5.88 -56.49 -0.33 67.54 16 14 O -0.99 -29.96 17.32 -128.00 -2.22 -32.18 16 15 O -0.98 -27.81 17.87 -128.00 -2.29 -30.10 16 16 C -0.82 -17.96 6.14 21.99 0.14 -17.83 16 17 C 0.13 2.78 11.82 85.24 1.01 3.78 16 18 N -0.31 -6.95 12.58 -57.02 -0.72 -7.67 16 19 N -0.35 -6.71 3.51 -322.65 -1.13 -7.84 16 20 C 0.12 1.64 4.23 46.01 0.19 1.83 16 21 H 0.13 1.68 8.14 -2.38 -0.02 1.66 16 22 C -0.16 -1.74 6.88 31.61 0.22 -1.53 16 23 C 0.04 0.42 7.64 72.49 0.55 0.97 16 24 O -0.38 -6.36 11.65 -148.98 -1.74 -8.10 16 25 C 0.03 0.48 7.21 72.49 0.52 1.00 16 26 C 0.17 3.44 10.20 83.54 0.85 4.29 16 27 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 28 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 29 H 0.00 -0.14 8.14 -2.38 -0.02 -0.15 16 30 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 2.20 7.75 -2.38 -0.02 2.18 16 34 H 0.43 8.78 8.65 -96.75 -0.84 7.95 16 35 H 0.22 3.44 8.06 -2.91 -0.02 3.42 16 36 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.08 1.04 7.96 -2.39 -0.02 1.02 16 38 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.08 1.12 5.97 -2.39 -0.01 1.11 16 41 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.21 3.23 6.89 -2.91 -0.02 3.21 16 Total: -1.00 -74.30 366.88 -2.01 -76.31 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.20 Total: 13.87 kcal Atomic # 6 Polarization: -39.68 SS G_CDS: 5.03 Total: -34.65 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -2.69 Total: -97.90 kcal Atomic # 8 Polarization: -64.14 SS G_CDS: -6.24 Total: -70.38 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 67.87 SS G_CDS: -0.33 Total: 67.54 kcal Total: -74.30 -2.01 -76.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332376643.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.194 kcal (2) G-P(sol) polarization free energy of solvation -74.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.66 seconds