Wall clock time and date at job start Tue Mar 31 2020 05:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86797 * 120.00147 * 2 1 4 4 H 1.48505 * 109.47137 * 275.41489 * 3 2 1 5 5 H 1.48496 * 109.47209 * 35.41130 * 3 2 1 6 6 H 1.48502 * 109.47496 * 155.41417 * 3 2 1 7 7 C 1.40233 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00209 * 342.92554 * 7 2 1 9 9 C 1.41108 * 119.99794 * 162.91892 * 7 2 1 10 10 C 1.40887 * 120.10455 * 333.02641 * 9 7 2 11 11 C 1.36320 * 119.89049 * 179.97438 * 10 9 7 12 12 C 1.40005 * 120.11027 * 0.02562 * 11 10 9 13 13 C 1.47635 * 119.90023 * 179.97438 * 12 11 10 14 14 O 1.21589 * 119.99754 * 325.74416 * 13 12 11 15 15 N 1.34773 * 120.00531 * 145.74668 * 13 12 11 16 16 C 1.46874 * 120.00932 * 354.36817 * 15 13 12 17 17 C 1.53802 * 108.98498 * 236.22874 * 16 15 13 18 18 N 1.46518 * 107.42886 * 314.47270 * 17 16 15 19 19 C 1.33536 * 129.67712 * 233.12815 * 18 17 16 20 20 O 1.21545 * 123.98171 * 350.10620 * 19 18 17 21 21 N 1.34131 * 112.02867 * 170.10245 * 19 18 17 22 22 C 1.34980 * 111.63078 * 4.05190 * 21 19 18 23 23 O 1.21239 * 127.17045 * 182.17658 * 22 21 19 24 24 C 1.47979 * 123.42818 * 51.44824 * 18 17 16 25 25 H 1.08997 * 111.76164 * 69.37434 * 24 18 17 26 26 C 1.47104 * 120.07976 * 174.39223 * 15 13 12 27 27 C 1.40013 * 120.20730 * 0.25676 * 12 11 10 28 28 C 1.36324 * 120.10800 * 359.47994 * 27 12 11 29 29 H 0.97000 * 120.00178 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.05340 * 0.02562 * 10 9 7 31 31 H 1.08003 * 119.94395 * 180.02562 * 11 10 9 32 32 H 1.09001 * 109.50081 * 116.41517 * 16 15 13 33 33 H 1.09002 * 109.61998 * 356.11329 * 16 15 13 34 34 H 1.08998 * 109.87862 * 194.96670 * 17 16 15 35 35 H 1.09007 * 109.87783 * 73.97927 * 17 16 15 36 36 H 0.97005 * 124.18692 * 184.04785 * 21 19 18 37 37 H 1.08997 * 109.75077 * 2.72081 * 26 15 13 38 38 H 1.09000 * 109.74578 * 241.99121 * 26 15 13 39 39 H 1.08003 * 119.94666 * 179.74281 * 27 12 11 40 40 H 1.07997 * 120.05437 * 180.23332 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3735 2.1124 -1.3939 5 1 1.4998 2.6169 0.8112 6 1 3.5905 1.4099 0.5825 7 6 2.0075 -1.2145 0.0005 8 1 1.5033 -2.1290 0.2755 9 6 3.3719 -1.2415 -0.3584 10 6 3.8938 -0.2623 -1.2266 11 6 5.2127 -0.2923 -1.5700 12 6 6.0482 -1.2943 -1.0620 13 6 7.4757 -1.3227 -1.4375 14 8 7.8190 -0.9691 -2.5490 15 7 8.3983 -1.7405 -0.5483 16 6 8.0014 -2.0497 0.8316 17 6 8.8442 -1.1994 1.7971 18 7 10.2365 -1.2745 1.3469 19 6 11.3356 -1.6101 2.0272 20 8 11.3699 -1.7558 3.2334 21 7 12.3970 -1.7674 1.2223 22 6 12.1003 -1.4601 -0.0581 23 8 12.8355 -1.5371 -1.0191 24 6 10.6594 -1.0004 -0.0444 25 1 10.5554 0.0545 -0.2980 26 6 9.8036 -1.8871 -0.9577 27 6 5.5328 -2.2730 -0.2036 28 6 4.2165 -2.2482 0.1499 29 1 -0.4850 0.8400 -0.0004 30 1 3.2502 0.5113 -1.6187 31 1 5.6137 0.4582 -2.2352 32 1 8.1739 -3.1073 1.0315 33 1 6.9451 -1.8185 0.9692 34 1 8.7601 -1.5949 2.8093 35 1 8.5026 -0.1645 1.7743 36 1 13.2698 -2.0651 1.5232 37 1 9.9203 -1.5696 -1.9939 38 1 10.1108 -2.9277 -0.8539 39 1 6.1802 -3.0465 0.1826 40 1 3.8207 -3.0014 0.8150 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332580193.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:52 Heat of formation + Delta-G solvation = -28.528454 kcal Electronic energy + Delta-G solvation = -27830.502739 eV Core-core repulsion = 23804.746354 eV Total energy + Delta-G solvation = -4025.756385 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.77604 -39.90501 -38.96212 -37.74197 -36.98036 -35.83613 -34.10085 -33.65281 -32.14011 -30.70836 -30.11237 -28.24551 -26.33113 -24.89144 -24.03383 -22.24711 -21.73186 -21.63705 -20.91343 -19.08569 -18.46833 -17.95278 -17.48881 -16.92239 -16.51332 -16.19946 -15.88282 -15.70495 -15.48029 -15.07053 -14.75074 -14.50106 -14.23358 -13.96362 -13.80773 -13.64048 -13.14121 -12.90558 -12.66933 -12.49448 -12.32958 -12.00268 -11.79771 -11.68361 -11.23507 -11.07687 -10.88908 -10.69928 -10.59368 -10.51599 -10.34284 -9.83565 -9.64866 -9.48288 -9.21141 -8.58520 -8.04049 -7.86533 -7.31813 -4.83916 1.24842 1.85910 1.92007 2.51017 2.65267 2.67378 2.89923 3.00819 3.03416 3.10103 3.37558 3.72536 3.78528 4.13070 4.26773 4.40959 4.66804 4.85820 4.96039 5.07796 5.16686 5.31713 5.37106 5.52343 5.63238 5.65445 5.70710 5.75088 5.91062 6.08372 6.27136 6.42497 6.53931 6.57782 6.71246 6.81874 6.99760 7.14028 7.20135 7.34261 7.55856 7.66084 7.78005 7.79416 7.99683 8.32556 8.43730 8.58753 9.67379 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.022052 B = 0.003101 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.407787 B = 9027.700644 C = 9474.346338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.080 3.920 3 Si 0.921 3.079 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.239 1.239 7 C -0.417 4.417 8 H 0.097 0.903 9 C 0.104 3.896 10 C -0.252 4.252 11 C -0.009 4.009 12 C -0.290 4.290 13 C 0.580 3.420 14 O -0.556 6.556 15 N -0.620 5.620 16 C 0.075 3.925 17 C 0.133 3.867 18 N -0.615 5.615 19 C 0.706 3.294 20 O -0.545 6.545 21 N -0.683 5.683 22 C 0.535 3.465 23 O -0.463 6.463 24 C 0.071 3.929 25 H 0.139 0.861 26 C 0.123 3.877 27 C -0.054 4.054 28 C -0.217 4.217 29 H 0.293 0.707 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.137 0.863 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.432 0.568 37 H 0.117 0.883 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.218 -1.096 4.050 15.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.144 4.144 3 Si 0.747 3.253 4 H -0.193 1.193 5 H -0.217 1.217 6 H -0.162 1.162 7 C -0.443 4.443 8 H 0.115 0.885 9 C 0.101 3.899 10 C -0.271 4.271 11 C -0.028 4.028 12 C -0.294 4.294 13 C 0.375 3.625 14 O -0.435 6.435 15 N -0.354 5.354 16 C -0.048 4.048 17 C 0.012 3.988 18 N -0.355 5.355 19 C 0.407 3.593 20 O -0.419 6.419 21 N -0.353 5.353 22 C 0.319 3.681 23 O -0.332 6.332 24 C -0.037 4.037 25 H 0.156 0.844 26 C -0.002 4.002 27 C -0.073 4.073 28 C -0.236 4.236 29 H 0.104 0.896 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.091 0.909 33 H 0.154 0.846 34 H 0.126 0.874 35 H 0.104 0.896 36 H 0.274 0.726 37 H 0.135 0.865 38 H 0.092 0.908 39 H 0.124 0.876 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 15.258 -0.908 3.638 15.712 hybrid contribution 0.629 0.557 0.186 0.861 sum 15.887 -0.351 3.824 16.345 Atomic orbital electron populations 1.69586 1.08458 1.31294 1.30993 1.26431 0.94880 1.02541 0.90515 0.86169 0.81289 0.78742 0.79140 1.19301 1.21674 1.16210 1.19820 0.92835 0.96124 1.35569 0.88534 1.17837 0.92849 0.90717 0.88535 1.20666 0.95467 1.04492 1.06498 1.20292 0.92766 0.95182 0.94534 1.18706 0.91268 1.05502 1.13915 1.18758 0.86039 0.74327 0.83360 1.90686 1.82113 1.49164 1.21586 1.47883 1.06740 1.69525 1.11277 1.22931 1.02459 0.99010 0.80421 1.22180 0.75171 1.02151 0.99314 1.47628 1.07432 1.70437 1.09978 1.15581 0.80542 0.78143 0.85030 1.91032 1.83834 1.56646 1.10386 1.44479 1.15575 1.65004 1.10282 1.20586 0.89440 0.75606 0.82424 1.90864 1.56178 1.49765 1.36360 1.22912 0.91791 1.03960 0.85063 0.84393 1.21556 0.80771 0.98202 0.99635 1.20617 0.95584 0.96156 0.94920 1.20690 0.93027 1.03461 1.06406 0.89636 0.87930 0.88059 0.90921 0.84580 0.87374 0.89608 0.72596 0.86486 0.90759 0.87647 0.87599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.68 13.92 55.56 0.77 -17.90 16 2 C 0.08 1.86 5.43 -17.31 -0.09 1.76 16 3 Si 0.92 18.69 24.40 -169.99 -4.15 14.55 16 4 H -0.27 -5.35 6.70 56.52 0.38 -4.97 16 5 H -0.29 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.24 -4.89 6.69 56.52 0.38 -4.51 16 7 C -0.42 -9.97 9.59 -37.74 -0.36 -10.33 16 8 H 0.10 2.40 8.06 -52.49 -0.42 1.97 16 9 C 0.10 2.33 5.20 -106.80 -0.55 1.78 16 10 C -0.25 -5.53 7.01 -39.27 -0.28 -5.81 16 11 C -0.01 -0.18 9.53 -39.61 -0.38 -0.55 16 12 C -0.29 -5.47 5.35 -104.73 -0.56 -6.03 16 13 C 0.58 10.16 7.37 -12.43 -0.09 10.07 16 14 O -0.56 -11.35 16.16 5.29 0.09 -11.26 16 15 N -0.62 -8.20 2.91 -173.36 -0.51 -8.71 16 16 C 0.08 0.81 4.95 -3.42 -0.02 0.79 16 17 C 0.13 1.26 7.16 -3.61 -0.03 1.24 16 18 N -0.62 -6.17 3.00 -171.54 -0.52 -6.68 16 19 C 0.71 7.67 8.72 -88.60 -0.77 6.90 16 20 O -0.54 -7.62 17.81 5.33 0.09 -7.53 16 21 N -0.68 -5.87 5.73 -16.00 -0.09 -5.97 16 22 C 0.53 5.17 8.06 -10.62 -0.09 5.09 16 23 O -0.46 -5.62 18.02 5.59 0.10 -5.52 16 24 C 0.07 0.69 4.12 -67.80 -0.28 0.41 16 25 H 0.14 1.24 8.14 -51.93 -0.42 0.81 16 26 C 0.12 1.39 6.04 -3.51 -0.02 1.37 16 27 C -0.05 -0.94 7.24 -39.61 -0.29 -1.23 16 28 C -0.22 -4.25 9.73 -39.27 -0.38 -4.64 16 29 H 0.29 6.27 8.29 -40.82 -0.34 5.94 16 30 H 0.10 2.25 4.24 -52.48 -0.22 2.03 16 31 H 0.10 2.01 7.98 -52.48 -0.42 1.59 16 32 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 33 H 0.14 1.64 4.12 -51.93 -0.21 1.43 16 34 H 0.11 0.92 8.00 -51.93 -0.42 0.51 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.43 2.76 8.96 -40.82 -0.37 2.40 16 37 H 0.12 1.48 6.95 -51.93 -0.36 1.12 16 38 H 0.07 0.76 8.02 -51.93 -0.42 0.35 16 39 H 0.11 1.50 5.91 -52.48 -0.31 1.19 16 40 H 0.11 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 330.92 15.07 4.99 4.99 Total: -1.00 -29.10 330.92 -7.42 -36.52 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -4.02 Total: 6.70 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -4.19 Total: 0.81 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: -0.34 Total: -39.26 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: 0.28 Total: -24.31 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -4.15 Total: 14.55 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.10 -7.42 -36.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332580193.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.996 kcal (2) G-P(sol) polarization free energy of solvation -29.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds