Wall clock time and date at job start Tue Mar 31 2020 05:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30651 * 1 3 3 Si 1.86796 * 119.99497 * 2 1 4 4 H 1.48500 * 109.47218 * 264.81524 * 3 2 1 5 5 H 1.48504 * 109.47127 * 144.81656 * 3 2 1 6 6 H 1.48502 * 109.47358 * 24.82198 * 3 2 1 7 7 C 1.40219 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99777 * 166.06240 * 7 2 1 9 9 C 1.41105 * 120.00254 * 346.06272 * 7 2 1 10 10 C 1.40884 * 120.10519 * 336.00038 * 9 7 2 11 11 C 1.36318 * 119.89557 * 179.69110 * 10 9 7 12 12 C 1.40011 * 120.10500 * 0.60263 * 11 10 9 13 13 C 1.47638 * 119.90112 * 179.69158 * 12 11 10 14 14 O 1.21582 * 120.00740 * 217.38459 * 13 12 11 15 15 N 1.34780 * 119.99670 * 37.37620 * 13 12 11 16 16 C 1.46826 * 120.07425 * 6.42646 * 15 13 12 17 17 C 1.53802 * 109.01322 * 123.65680 * 16 15 13 18 18 N 1.46520 * 107.36778 * 45.63173 * 17 16 15 19 19 C 1.33537 * 129.67142 * 126.83350 * 18 17 16 20 20 O 1.21538 * 123.98629 * 9.88371 * 19 18 17 21 21 N 1.34139 * 112.02288 * 189.89816 * 19 18 17 22 22 C 1.34983 * 111.63171 * 355.95371 * 21 19 18 23 23 O 1.21239 * 127.17000 * 177.82904 * 22 21 19 24 24 C 1.47974 * 123.42585 * 308.51898 * 18 17 16 25 25 H 1.09002 * 111.76394 * 290.62174 * 24 18 17 26 26 C 1.47104 * 120.07932 * 186.14454 * 15 13 12 27 27 C 1.40019 * 120.20846 * 359.67030 * 12 11 10 28 28 C 1.36318 * 120.10610 * 0.02562 * 27 12 11 29 29 H 0.96991 * 120.00397 * 0.02562 * 1 2 3 30 30 H 1.08010 * 120.05098 * 359.97104 * 10 9 7 31 31 H 1.07991 * 119.94885 * 180.27259 * 11 10 9 32 32 H 1.09003 * 109.54897 * 243.51534 * 16 15 13 33 33 H 1.08999 * 109.54829 * 3.70471 * 16 15 13 34 34 H 1.09003 * 109.87981 * 165.09991 * 17 16 15 35 35 H 1.09001 * 109.87570 * 286.16702 * 17 16 15 36 36 H 0.96994 * 124.18295 * 175.97618 * 21 19 18 37 37 H 1.09006 * 109.74385 * 357.31550 * 26 15 13 38 38 H 1.08997 * 109.75096 * 118.04260 * 26 15 13 39 39 H 1.07993 * 119.94573 * 179.97438 * 27 12 11 40 40 H 1.07999 * 120.05339 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.5974 1.9833 -1.3943 5 1 3.4789 1.4744 0.8067 6 1 1.3873 2.6818 0.5877 7 6 2.0076 -1.2143 0.0005 8 1 3.0639 -1.2281 -0.2248 9 6 1.3334 -2.4182 0.2954 10 6 0.1490 -2.3964 1.0580 11 6 -0.5024 -3.5614 1.3350 12 6 0.0107 -4.7797 0.8736 13 6 -0.6948 -6.0394 1.1821 14 8 -0.0604 -7.0471 1.4278 15 7 -2.0421 -6.0723 1.1915 16 6 -2.8098 -4.8978 0.7589 17 6 -3.7565 -5.3100 -0.3810 18 7 -4.4027 -6.5629 0.0186 19 6 -5.7003 -6.8736 0.0717 20 8 -6.5852 -6.1761 -0.3838 21 7 -5.9118 -8.0464 0.6875 22 6 -4.7512 -8.6519 1.0170 23 8 -4.6147 -9.6997 1.6114 24 6 -3.6566 -7.7504 0.4905 25 1 -3.0846 -8.2141 -0.3133 26 6 -2.7470 -7.2870 1.6292 27 6 1.1906 -4.8071 0.1202 28 6 1.8456 -3.6466 -0.1671 29 1 -0.4850 0.8399 -0.0004 30 1 -0.2448 -1.4575 1.4188 31 1 -1.4127 -3.5452 1.9158 32 1 -3.3927 -4.5144 1.5964 33 1 -2.1267 -4.1253 0.4061 34 1 -4.5097 -4.5372 -0.5350 35 1 -3.1877 -5.4624 -1.2982 36 1 -6.7900 -8.4140 0.8728 37 1 -2.0238 -8.0687 1.8619 38 1 -3.3483 -7.0664 2.5110 39 1 1.5827 -5.7492 -0.2332 40 1 2.7553 -3.6687 -0.7486 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332580194.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:55 Heat of formation + Delta-G solvation = -34.734449 kcal Electronic energy + Delta-G solvation = -27771.614108 eV Core-core repulsion = 23745.588611 eV Total energy + Delta-G solvation = -4026.025497 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.70271 -39.73083 -38.89156 -37.50863 -36.85559 -35.74042 -34.05997 -33.56733 -31.98334 -30.20746 -29.60526 -28.11176 -26.26170 -24.87773 -23.91455 -22.19952 -21.60764 -21.17152 -20.94015 -18.89018 -18.38215 -17.65883 -17.46153 -16.68555 -16.37237 -16.13035 -15.81393 -15.53052 -15.44447 -15.01821 -14.58653 -14.34407 -14.22440 -13.88440 -13.51491 -13.43188 -12.95435 -12.81524 -12.49129 -12.05101 -12.00266 -11.76250 -11.64563 -11.40006 -11.28067 -11.15835 -11.04305 -10.71417 -10.63105 -10.48042 -10.17873 -9.67523 -9.56091 -9.41599 -9.17614 -8.46645 -7.79187 -7.64503 -7.07886 -4.70167 1.31784 1.94301 2.15369 2.71845 2.75019 2.85639 2.89062 2.90926 2.95136 3.13697 3.53296 3.68886 3.86925 4.23756 4.39548 4.51334 4.75968 4.98799 5.09394 5.20014 5.41948 5.43454 5.47030 5.67323 5.76473 5.81085 5.84121 5.99151 6.15623 6.18769 6.57562 6.68727 6.73494 6.79488 6.92788 7.03212 7.06687 7.32766 7.43318 7.67634 7.75880 7.83070 7.87504 7.97332 8.31283 8.55268 8.64764 8.72037 9.81095 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.020960 B = 0.003017 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.536933 B = 9278.715904 C =10314.705653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.073 3.927 3 Si 0.915 3.085 4 H -0.266 1.266 5 H -0.258 1.258 6 H -0.274 1.274 7 C -0.438 4.438 8 H 0.084 0.916 9 C 0.125 3.875 10 C -0.175 4.175 11 C -0.073 4.073 12 C -0.284 4.284 13 C 0.580 3.420 14 O -0.560 6.560 15 N -0.619 5.619 16 C 0.080 3.920 17 C 0.134 3.866 18 N -0.615 5.615 19 C 0.706 3.294 20 O -0.545 6.545 21 N -0.683 5.683 22 C 0.535 3.465 23 O -0.464 6.464 24 C 0.072 3.928 25 H 0.138 0.862 26 C 0.122 3.878 27 C -0.026 4.026 28 C -0.235 4.235 29 H 0.287 0.713 30 H 0.128 0.872 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.136 0.864 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.431 0.569 37 H 0.116 0.884 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.669 -6.105 0.139 10.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.148 4.148 3 Si 0.738 3.262 4 H -0.191 1.191 5 H -0.182 1.182 6 H -0.198 1.198 7 C -0.466 4.466 8 H 0.102 0.898 9 C 0.122 3.878 10 C -0.194 4.194 11 C -0.092 4.092 12 C -0.289 4.289 13 C 0.376 3.624 14 O -0.439 6.439 15 N -0.354 5.354 16 C -0.043 4.043 17 C 0.013 3.987 18 N -0.354 5.354 19 C 0.407 3.593 20 O -0.419 6.419 21 N -0.353 5.353 22 C 0.320 3.680 23 O -0.333 6.333 24 C -0.037 4.037 25 H 0.156 0.844 26 C -0.003 4.003 27 C -0.045 4.045 28 C -0.255 4.255 29 H 0.098 0.902 30 H 0.146 0.854 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.154 0.846 34 H 0.126 0.874 35 H 0.104 0.896 36 H 0.274 0.726 37 H 0.134 0.866 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.784 -6.471 0.263 10.913 hybrid contribution -0.300 0.557 -0.023 0.633 sum -9.084 -5.914 0.240 10.842 Atomic orbital electron populations 1.69687 1.07806 1.30035 1.32276 1.26090 0.94906 1.01905 0.91895 0.86196 0.80535 0.79657 0.79776 1.19052 1.18219 1.19828 1.19862 0.97172 0.90784 1.38767 0.89810 1.17791 0.91057 0.92116 0.86848 1.21154 0.98729 0.97066 1.02434 1.20592 0.97797 0.92190 0.98589 1.18752 1.01835 0.90858 1.17412 1.18873 0.80062 0.89089 0.74403 1.90666 1.65915 1.36729 1.50589 1.47903 1.06112 1.13348 1.68001 1.22772 0.95294 0.89535 0.96731 1.22185 0.95926 0.82406 0.98206 1.47654 1.04643 1.14789 1.68320 1.15588 0.83829 0.80938 0.78990 1.91027 1.45938 1.53739 1.51229 1.44479 1.11742 1.22256 1.56869 1.20592 0.84794 0.85059 0.77570 1.90858 1.84600 1.20602 1.37234 1.22821 0.94051 0.86329 1.00495 0.84437 1.21452 0.95362 0.90155 0.93316 1.20241 0.92496 0.96884 0.94879 1.20704 1.03259 0.92738 1.08799 0.90189 0.85425 0.88536 0.91106 0.84646 0.87391 0.89619 0.72648 0.86579 0.90899 0.88601 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.18 10.68 55.56 0.59 -16.59 16 2 C 0.07 1.59 5.23 -17.31 -0.09 1.50 16 3 Si 0.91 16.43 29.58 -169.99 -5.03 11.40 16 4 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 5 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 6 H -0.27 -4.81 7.11 56.52 0.40 -4.40 16 7 C -0.44 -10.24 9.07 -37.75 -0.34 -10.58 16 8 H 0.08 1.88 7.89 -52.48 -0.41 1.47 16 9 C 0.13 2.95 5.60 -106.80 -0.60 2.35 16 10 C -0.17 -3.90 8.64 -39.27 -0.34 -4.24 16 11 C -0.07 -1.44 7.24 -39.61 -0.29 -1.73 16 12 C -0.28 -5.76 5.24 -104.73 -0.55 -6.31 16 13 C 0.58 10.88 7.32 -12.42 -0.09 10.79 16 14 O -0.56 -11.96 16.23 5.29 0.09 -11.88 16 15 N -0.62 -9.02 2.92 -173.67 -0.51 -9.53 16 16 C 0.08 1.01 5.01 -3.45 -0.02 0.99 16 17 C 0.13 1.47 7.16 -3.61 -0.03 1.44 16 18 N -0.61 -6.82 3.00 -171.80 -0.52 -7.34 16 19 C 0.71 8.32 8.72 -88.59 -0.77 7.54 16 20 O -0.55 -8.13 17.81 5.33 0.09 -8.04 16 21 N -0.68 -6.40 5.73 -16.00 -0.09 -6.49 16 22 C 0.54 5.58 8.06 -10.62 -0.09 5.49 16 23 O -0.46 -5.93 18.02 5.59 0.10 -5.83 16 24 C 0.07 0.76 4.10 -68.03 -0.28 0.48 16 25 H 0.14 1.35 8.14 -51.93 -0.42 0.92 16 26 C 0.12 1.50 6.01 -3.75 -0.02 1.48 16 27 C -0.03 -0.55 9.55 -39.61 -0.38 -0.93 16 28 C -0.24 -5.23 9.73 -39.27 -0.38 -5.62 16 29 H 0.29 5.75 8.29 -40.82 -0.34 5.41 16 30 H 0.13 2.93 5.95 -52.48 -0.31 2.62 16 31 H 0.10 1.66 6.28 -52.49 -0.33 1.33 16 32 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 33 H 0.14 1.97 4.36 -51.93 -0.23 1.74 16 34 H 0.11 1.10 8.00 -51.93 -0.42 0.69 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.43 3.06 8.96 -40.82 -0.37 2.69 16 37 H 0.12 1.57 6.95 -51.93 -0.36 1.21 16 38 H 0.07 0.83 8.01 -51.93 -0.42 0.41 16 39 H 0.10 1.94 8.02 -52.49 -0.42 1.52 16 40 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 337.14 15.07 5.08 5.08 Total: -1.00 -28.50 337.14 -8.53 -37.03 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -4.09 Total: 9.52 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -4.26 Total: 2.66 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: -0.52 Total: -39.95 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: 0.28 Total: -25.74 kcal Atomic # 14 Polarization: 16.43 SS G_CDS: -5.03 Total: 11.40 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.50 -8.53 -37.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332580194.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.297 kcal (2) G-P(sol) polarization free energy of solvation -28.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds