Wall clock time and date at job start Tue Mar 31 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 120.00207 * 2 1 4 4 H 1.48498 * 109.46848 * 239.99757 * 3 2 1 5 5 H 1.48496 * 109.47078 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46841 * 120.00379 * 3 2 1 7 7 C 1.39942 * 119.99592 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99705 * 197.00947 * 7 2 1 9 9 C 1.41430 * 119.99824 * 17.01460 * 7 2 1 10 10 C 1.40791 * 120.17463 * 205.09462 * 9 7 2 11 11 C 1.37708 * 120.04287 * 180.02562 * 10 9 7 12 12 C 1.38376 * 120.41064 * 359.97438 * 11 10 9 13 13 C 1.39883 * 120.35657 * 0.02562 * 12 11 10 14 14 C 1.47885 * 120.02366 * 179.97438 * 13 12 11 15 15 O 1.21548 * 120.00338 * 138.75003 * 14 13 12 16 16 N 1.34773 * 119.99951 * 319.02538 * 14 13 12 17 17 C 1.46827 * 120.07576 * 353.73425 * 16 14 13 18 18 C 1.53367 * 109.24812 * 236.33681 * 17 16 14 19 19 N 1.46559 * 107.38936 * 314.56674 * 18 17 16 20 20 C 1.33538 * 129.52421 * 234.21196 * 19 18 17 21 21 O 1.21537 * 123.97874 * 350.20640 * 20 19 18 22 22 N 1.34134 * 112.04450 * 170.22644 * 20 19 18 23 23 C 1.34983 * 111.65132 * 3.13255 * 22 20 19 24 24 O 1.21227 * 127.16745 * 182.40441 * 23 22 20 25 25 C 1.47927 * 123.45786 * 51.33080 * 19 18 17 26 26 H 1.08998 * 112.62146 * 69.96120 * 25 19 18 27 27 C 1.47107 * 120.07514 * 174.01027 * 16 14 13 28 28 C 1.39029 * 119.94931 * 0.24570 * 13 12 11 29 29 H 0.97006 * 119.99540 * 0.02562 * 1 2 3 30 30 H 1.08002 * 119.98144 * 359.97438 * 10 9 7 31 31 H 1.07999 * 119.79874 * 179.97438 * 11 10 9 32 32 H 1.07997 * 119.82337 * 179.97438 * 12 11 10 33 33 H 1.08991 * 109.54505 * 356.23387 * 17 16 14 34 34 H 1.08999 * 109.54849 * 116.51585 * 17 16 14 35 35 H 1.08996 * 109.96298 * 195.03486 * 18 17 16 36 36 H 1.08994 * 109.75191 * 73.98254 * 18 17 16 37 37 H 0.96997 * 124.17929 * 183.09607 * 22 20 19 38 38 H 1.09006 * 109.75137 * 241.96414 * 27 16 14 39 39 H 1.09001 * 109.75299 * 2.69132 * 27 16 14 40 40 H 1.08003 * 120.20487 * 179.73367 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2774 2.7464 0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0525 -1.2326 0.2731 9 6 1.3470 -2.4098 -0.3595 10 6 1.8192 -3.6482 0.1155 11 6 1.1739 -4.8128 -0.2361 12 6 0.0597 -4.7763 -1.0559 13 6 -0.4239 -3.5552 -1.5374 14 6 -1.6149 -3.5247 -2.4135 15 8 -2.4609 -2.6657 -2.2595 16 7 -1.7650 -4.4528 -3.3792 17 6 -0.6860 -5.4099 -3.6541 18 6 -0.2885 -5.3129 -5.1321 19 7 -1.5256 -5.2821 -5.9173 20 6 -1.9082 -6.0622 -6.9314 21 8 -1.1776 -6.8563 -7.4906 22 7 -3.1936 -5.8658 -7.2605 23 6 -3.7510 -4.8805 -6.5253 24 8 -4.9017 -4.5008 -6.5619 25 6 -2.6412 -4.3494 -5.6454 26 1 -2.3933 -3.3166 -5.8902 27 6 -3.0080 -4.5054 -4.1643 28 6 0.2194 -2.3708 -1.1964 29 1 -0.4850 0.8401 -0.0004 30 1 2.6884 -3.6849 0.7554 31 1 1.5397 -5.7607 0.1301 32 1 -0.4387 -5.6954 -1.3260 33 1 0.1764 -5.1762 -3.0300 34 1 -1.0313 -6.4209 -3.4377 35 1 0.3084 -6.1800 -5.4147 36 1 0.2807 -4.3989 -5.3012 37 1 -3.6644 -6.3693 -7.9429 38 1 -3.5031 -5.4636 -4.0064 39 1 -3.6697 -3.6939 -3.8613 40 1 -0.1479 -1.4261 -1.5694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332606064.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:37 Heat of formation + Delta-G solvation = -34.255835 kcal Electronic energy + Delta-G solvation = -27952.951685 eV Core-core repulsion = 23926.946942 eV Total energy + Delta-G solvation = -4026.004743 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.73137 -39.80585 -38.91995 -37.45769 -36.86658 -35.78920 -33.98541 -33.52673 -32.01486 -30.20545 -29.60591 -28.04209 -25.77960 -25.05073 -24.02706 -22.49343 -21.66082 -21.17043 -20.96539 -18.89247 -18.42611 -17.74675 -17.34014 -16.55117 -16.23053 -16.07070 -15.83649 -15.49425 -15.26990 -15.01236 -14.92321 -14.47208 -14.34295 -13.90474 -13.54178 -13.46270 -12.90012 -12.79721 -12.59933 -12.33665 -11.88776 -11.73412 -11.70234 -11.22580 -11.19133 -11.08185 -10.84089 -10.65630 -10.60073 -10.47806 -10.24479 -9.82903 -9.60454 -9.33781 -9.13541 -8.53100 -7.73791 -7.61826 -6.88863 -4.52469 1.29745 1.90513 2.15643 2.67159 2.71960 2.72583 3.01345 3.02479 3.04811 3.07512 3.46717 3.82945 3.83652 4.19172 4.45268 4.47617 4.72959 4.92320 5.03047 5.09866 5.34550 5.41210 5.44294 5.59894 5.67445 5.75396 5.77327 6.01244 6.12531 6.20052 6.48003 6.61550 6.75834 6.86924 6.90721 7.04544 7.09150 7.25605 7.44349 7.62120 7.70595 7.83260 7.84575 8.04282 8.38106 8.58503 8.69849 8.72063 10.05022 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.017467 B = 0.003284 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.608301 B = 8523.214790 C = 9104.843699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.459 4.459 8 H 0.082 0.918 9 C 0.104 3.896 10 C -0.212 4.212 11 C -0.093 4.093 12 C -0.228 4.228 13 C -0.121 4.121 14 C 0.571 3.429 15 O -0.531 6.531 16 N -0.617 5.617 17 C 0.080 3.920 18 C 0.133 3.867 19 N -0.614 5.614 20 C 0.706 3.294 21 O -0.546 6.546 22 N -0.683 5.683 23 C 0.534 3.466 24 O -0.463 6.463 25 C 0.071 3.929 26 H 0.140 0.860 27 C 0.121 3.879 28 C -0.101 4.101 29 H 0.286 0.714 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.135 0.865 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.431 0.569 38 H 0.075 0.925 39 H 0.118 0.882 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.335 -8.393 -10.049 13.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.147 4.147 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.102 3.898 10 C -0.232 4.232 11 C -0.111 4.111 12 C -0.247 4.247 13 C -0.124 4.124 14 C 0.363 3.637 15 O -0.406 6.406 16 N -0.352 5.352 17 C -0.044 4.044 18 C 0.012 3.988 19 N -0.353 5.353 20 C 0.407 3.593 21 O -0.420 6.420 22 N -0.354 5.354 23 C 0.319 3.681 24 O -0.331 6.331 25 C -0.037 4.037 26 H 0.157 0.843 27 C -0.003 4.003 28 C -0.121 4.121 29 H 0.097 0.903 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.152 0.848 34 H 0.090 0.910 35 H 0.127 0.873 36 H 0.105 0.895 37 H 0.274 0.726 38 H 0.094 0.906 39 H 0.136 0.864 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.049 -7.914 -10.109 13.195 hybrid contribution 0.020 0.445 -0.345 0.563 sum -3.029 -7.469 -10.453 13.200 Atomic orbital electron populations 1.69792 1.07504 1.30001 1.33102 1.25980 0.94790 1.01564 0.92321 0.86326 0.80124 0.80075 0.80058 1.18703 1.20186 1.18894 1.19590 0.97961 0.90963 1.40275 0.90037 1.17554 0.91046 0.92453 0.88782 1.21114 1.03545 0.92769 1.05749 1.20455 0.95907 0.96798 0.97960 1.20386 1.01218 0.94697 1.08439 1.19326 0.95944 0.95528 1.01620 1.19133 0.86733 0.78891 0.78959 1.90740 1.43923 1.35716 1.70264 1.47923 1.16300 1.34581 1.36414 1.22643 0.93330 0.93082 0.95302 1.22123 0.82705 1.04684 0.89320 1.47613 1.18932 1.34769 1.33997 1.15575 0.81427 0.81407 0.80854 1.91024 1.55153 1.39130 1.56717 1.44482 1.13180 1.37890 1.39819 1.20621 0.88403 0.78827 0.80291 1.90862 1.16588 1.60017 1.65653 1.22878 0.85670 0.97369 0.97818 0.84268 1.21590 0.88324 1.04589 0.85832 1.21478 0.97162 0.95558 0.97926 0.90260 0.88571 0.88752 0.88574 0.84750 0.91027 0.87341 0.89521 0.72635 0.90644 0.86428 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.68 10.96 55.55 0.61 -19.07 16 2 C 0.07 1.75 5.15 -17.34 -0.09 1.66 16 3 Si 0.91 17.77 29.59 -169.99 -5.03 12.74 16 4 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 7 C -0.46 -11.31 9.05 -37.73 -0.34 -11.65 16 8 H 0.08 1.90 7.90 -52.48 -0.41 1.49 16 9 C 0.10 2.54 5.56 -106.87 -0.59 1.95 16 10 C -0.21 -4.62 9.78 -38.81 -0.38 -5.00 16 11 C -0.09 -1.78 10.01 -39.72 -0.40 -2.18 16 12 C -0.23 -4.25 7.35 -38.92 -0.29 -4.54 16 13 C -0.12 -2.54 5.09 -105.04 -0.53 -3.08 16 14 C 0.57 11.08 7.29 -12.31 -0.09 10.99 16 15 O -0.53 -12.11 16.31 5.32 0.09 -12.02 16 16 N -0.62 -8.88 2.92 -173.58 -0.51 -9.38 16 17 C 0.08 0.92 5.09 -3.67 -0.02 0.90 16 18 C 0.13 1.33 7.15 -3.82 -0.03 1.30 16 19 N -0.61 -6.51 3.00 -171.82 -0.52 -7.03 16 20 C 0.71 7.98 8.73 -88.59 -0.77 7.21 16 21 O -0.55 -7.80 17.79 5.33 0.09 -7.70 16 22 N -0.68 -6.21 5.73 -16.00 -0.09 -6.30 16 23 C 0.53 5.51 8.06 -10.62 -0.09 5.42 16 24 O -0.46 -5.92 18.02 5.60 0.10 -5.82 16 25 C 0.07 0.75 4.12 -67.82 -0.28 0.47 16 26 H 0.14 1.38 8.14 -51.93 -0.42 0.96 16 27 C 0.12 1.48 6.04 -3.51 -0.02 1.46 16 28 C -0.10 -2.45 8.28 -38.44 -0.32 -2.77 16 29 H 0.29 6.68 8.30 -40.82 -0.34 6.34 16 30 H 0.10 1.97 8.06 -52.49 -0.42 1.54 16 31 H 0.09 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.10 1.53 6.65 -52.49 -0.35 1.18 16 33 H 0.13 1.73 4.56 -51.93 -0.24 1.49 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.11 0.96 7.98 -51.93 -0.41 0.55 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.43 2.95 8.96 -40.82 -0.37 2.58 16 38 H 0.08 0.83 8.02 -51.93 -0.42 0.41 16 39 H 0.12 1.62 6.95 -51.93 -0.36 1.25 16 40 H 0.13 3.34 6.19 -52.48 -0.32 3.02 16 LS Contribution 338.44 15.07 5.10 5.10 Total: -1.00 -30.43 338.44 -8.52 -38.95 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -4.13 Total: 8.39 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -4.24 Total: 2.15 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: -0.51 Total: -41.78 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: 0.28 Total: -25.55 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.43 -8.52 -38.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332606064.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.693 kcal (2) G-P(sol) polarization free energy of solvation -30.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds