Wall clock time and date at job start Tue Mar 31 2020 05:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86800 * 119.99561 * 2 1 4 4 H 1.48503 * 109.47123 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46998 * 299.99347 * 3 2 1 6 6 H 1.48498 * 109.47692 * 59.99889 * 3 2 1 7 7 C 1.39939 * 120.00505 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00173 * 166.00287 * 7 2 1 9 9 C 1.41440 * 119.99606 * 346.01059 * 7 2 1 10 10 C 1.40783 * 120.17462 * 152.24305 * 9 7 2 11 11 C 1.37715 * 120.03926 * 179.97438 * 10 9 7 12 12 C 1.38375 * 120.40831 * 0.25442 * 11 10 9 13 13 C 1.39875 * 120.36172 * 359.44476 * 12 11 10 14 14 C 1.47887 * 120.02686 * 180.25649 * 13 12 11 15 15 O 1.21547 * 119.99932 * 210.13097 * 14 13 12 16 16 N 1.34771 * 120.00007 * 30.12991 * 14 13 12 17 17 C 1.46827 * 120.07522 * 6.12788 * 16 14 13 18 18 C 1.53793 * 109.01279 * 123.68432 * 17 16 14 19 19 N 1.46531 * 107.36740 * 45.63292 * 18 17 16 20 20 C 1.33530 * 129.66765 * 126.83767 * 19 18 17 21 21 O 1.21538 * 123.99529 * 9.85809 * 20 19 18 22 22 N 1.34144 * 112.01937 * 189.89285 * 20 19 18 23 23 C 1.34982 * 111.63232 * 355.95496 * 22 20 19 24 24 O 1.21235 * 127.17010 * 177.84188 * 23 22 20 25 25 C 1.47971 * 123.42646 * 308.51645 * 19 18 17 26 26 H 1.08998 * 111.76378 * 289.62568 * 25 19 18 27 27 C 1.47108 * 120.07379 * 185.85423 * 16 14 13 28 28 C 1.39038 * 119.94605 * 0.57612 * 13 12 11 29 29 H 0.97001 * 120.00538 * 0.02562 * 1 2 3 30 30 H 1.07993 * 119.98520 * 359.97382 * 10 9 7 31 31 H 1.07993 * 119.79398 * 179.97438 * 11 10 9 32 32 H 1.08009 * 119.81783 * 179.70412 * 12 11 10 33 33 H 1.09006 * 109.54526 * 243.54664 * 17 16 14 34 34 H 1.08999 * 109.54725 * 3.82014 * 17 16 14 35 35 H 1.09001 * 109.87911 * 165.09693 * 18 17 16 36 36 H 1.09001 * 109.88030 * 286.16757 * 18 17 16 37 37 H 0.97004 * 124.18172 * 175.94880 * 22 20 19 38 38 H 1.08997 * 109.75201 * 357.28355 * 27 16 14 39 39 H 1.08997 * 109.74748 * 118.01984 * 27 16 14 40 40 H 1.08005 * 120.19853 * 179.67920 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.7021 1.3466 0.0006 5 1 1.8834 2.3964 -1.2126 6 1 1.8834 2.3966 1.2124 7 6 2.0080 -1.2118 0.0005 8 1 3.0640 -1.2258 -0.2257 9 6 1.3323 -2.4185 0.2972 10 6 1.7945 -3.6374 -0.2343 11 6 1.1347 -4.8107 0.0568 12 6 0.0129 -4.8010 0.8669 13 6 -0.4573 -3.6004 1.4091 14 6 -1.6536 -3.5994 2.2785 15 8 -2.3808 -2.6260 2.3104 16 7 -1.9374 -4.6778 3.0354 17 6 -0.9922 -5.7993 3.1021 18 6 -0.6175 -6.0521 4.5721 19 7 -1.8589 -6.0282 5.3503 20 6 -2.3491 -6.9331 6.2011 21 8 -1.7251 -7.8951 6.6039 22 7 -3.6119 -6.6552 6.5584 23 6 -4.0314 -5.4845 6.0335 24 8 -5.1299 -4.9838 6.1447 25 6 -2.8454 -4.9278 5.2776 26 1 -2.4673 -4.0149 5.7377 27 6 -3.1922 -4.7311 3.8015 28 6 0.1970 -2.4071 1.1246 29 1 -0.4851 0.8400 -0.0004 30 1 2.6669 -3.6526 -0.8706 31 1 1.4925 -5.7435 -0.3533 32 1 -0.4999 -5.7262 1.0851 33 1 -1.4567 -6.6930 2.6852 34 1 -0.0949 -5.5543 2.5339 35 1 -0.1374 -7.0257 4.6701 36 1 0.0550 -5.2693 4.9231 37 1 -4.1562 -7.2252 7.1238 38 1 -3.7408 -3.7978 3.6751 39 1 -3.8002 -5.5665 3.4545 40 1 -0.1656 -1.4770 1.5368 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332606065.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:41 Heat of formation + Delta-G solvation = -22.714359 kcal Electronic energy + Delta-G solvation = -27933.686519 eV Core-core repulsion = 23908.182252 eV Total energy + Delta-G solvation = -4025.504267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.73732 -39.85768 -38.91628 -37.45068 -36.88308 -35.79966 -34.03510 -33.50589 -32.05550 -30.17317 -29.62458 -28.05371 -25.90379 -24.98268 -24.07198 -22.48508 -21.64921 -21.19050 -20.95528 -18.94622 -18.41740 -17.75749 -17.35403 -16.54391 -16.20897 -16.06836 -15.81650 -15.48935 -15.27341 -15.02178 -14.97397 -14.46560 -14.33027 -13.90715 -13.50443 -13.43065 -12.98085 -12.81615 -12.60427 -12.29183 -11.85604 -11.74571 -11.71541 -11.22956 -11.19071 -11.00402 -10.82718 -10.65509 -10.58119 -10.38818 -10.19890 -9.80426 -9.58100 -9.35308 -9.13131 -8.52331 -7.75239 -7.58969 -6.86529 -4.53156 1.30025 1.90836 2.08040 2.65881 2.71122 2.72520 3.02508 3.03664 3.06450 3.07553 3.54349 3.83407 3.84970 4.20260 4.47348 4.48176 4.72525 4.92590 5.04229 5.10741 5.35158 5.41725 5.42702 5.61839 5.68352 5.76097 5.76376 5.97587 6.11538 6.17032 6.47986 6.61147 6.75869 6.86683 6.87918 7.04607 7.09427 7.24914 7.44301 7.59693 7.69732 7.83497 7.85440 8.04248 8.38446 8.61099 8.69897 8.72227 10.07513 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.019061 B = 0.003211 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.651892 B = 8719.192927 C = 9479.623904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.072 3.928 3 Si 0.911 3.089 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.459 4.459 8 H 0.082 0.918 9 C 0.102 3.898 10 C -0.208 4.208 11 C -0.095 4.095 12 C -0.235 4.235 13 C -0.125 4.125 14 C 0.569 3.431 15 O -0.532 6.532 16 N -0.617 5.617 17 C 0.064 3.936 18 C 0.133 3.867 19 N -0.615 5.615 20 C 0.706 3.294 21 O -0.546 6.546 22 N -0.683 5.683 23 C 0.534 3.466 24 O -0.463 6.463 25 C 0.072 3.928 26 H 0.139 0.861 27 C 0.122 3.878 28 C -0.092 4.092 29 H 0.285 0.715 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.150 0.850 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.431 0.569 38 H 0.117 0.883 39 H 0.075 0.925 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.977 -9.747 8.622 13.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.148 4.148 3 Si 0.735 3.265 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.100 3.900 10 C -0.228 4.228 11 C -0.113 4.113 12 C -0.255 4.255 13 C -0.128 4.128 14 C 0.361 3.639 15 O -0.408 6.408 16 N -0.351 5.351 17 C -0.059 4.059 18 C 0.011 3.989 19 N -0.355 5.355 20 C 0.407 3.593 21 O -0.421 6.421 22 N -0.354 5.354 23 C 0.319 3.681 24 O -0.331 6.331 25 C -0.036 4.036 26 H 0.156 0.844 27 C -0.003 4.003 28 C -0.112 4.112 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.125 0.875 33 H 0.090 0.910 34 H 0.167 0.833 35 H 0.125 0.875 36 H 0.104 0.896 37 H 0.274 0.726 38 H 0.136 0.864 39 H 0.093 0.907 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.639 -9.229 8.756 13.232 hybrid contribution -0.060 0.386 0.311 0.499 sum -3.700 -8.843 9.067 13.195 Atomic orbital electron populations 1.69777 1.07447 1.29761 1.33821 1.25970 0.94841 1.01550 0.92395 0.86211 0.80785 0.80762 0.78740 1.18346 1.19855 1.19600 1.19646 0.96982 0.90572 1.41574 0.89986 1.17599 0.91160 0.92551 0.88708 1.21162 1.03354 0.93069 1.05238 1.20487 0.95948 0.96815 0.98055 1.20647 1.01354 0.95447 1.08043 1.19354 0.96052 0.95604 1.01789 1.19082 0.85577 0.80638 0.78562 1.90736 1.50847 1.33003 1.66196 1.47870 1.19946 1.19573 1.47759 1.23280 0.97276 0.89567 0.95794 1.22223 0.82467 1.04453 0.89715 1.47656 1.22851 1.19861 1.45083 1.15584 0.80957 0.83062 0.79691 1.91022 1.61454 1.30426 1.59151 1.44485 1.15627 1.24666 1.50596 1.20621 0.88565 0.80500 0.78461 1.90864 1.21480 1.62907 1.57864 1.22824 0.87745 0.93551 0.99521 0.84392 1.21459 0.87669 1.05234 0.85905 1.21557 0.96644 0.95458 0.97511 0.90388 0.88509 0.88666 0.87540 0.91019 0.83286 0.87468 0.89610 0.72637 0.86440 0.90673 0.85233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.86 10.95 55.55 0.61 -19.25 16 2 C 0.07 1.72 5.19 -17.35 -0.09 1.63 16 3 Si 0.91 17.89 29.58 -169.99 -5.03 12.86 16 4 H -0.26 -5.00 7.11 56.52 0.40 -4.59 16 5 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.46 -11.32 9.06 -37.73 -0.34 -11.67 16 8 H 0.08 1.93 7.88 -52.49 -0.41 1.51 16 9 C 0.10 2.50 5.55 -106.87 -0.59 1.91 16 10 C -0.21 -4.52 9.78 -38.81 -0.38 -4.90 16 11 C -0.09 -1.79 10.01 -39.72 -0.40 -2.19 16 12 C -0.24 -4.31 7.38 -38.92 -0.29 -4.60 16 13 C -0.12 -2.62 5.44 -105.04 -0.57 -3.19 16 14 C 0.57 11.05 7.43 -12.31 -0.09 10.96 16 15 O -0.53 -12.13 16.07 5.32 0.09 -12.05 16 16 N -0.62 -8.88 2.92 -173.61 -0.51 -9.39 16 17 C 0.06 0.73 4.91 -3.45 -0.02 0.71 16 18 C 0.13 1.32 7.16 -3.61 -0.03 1.29 16 19 N -0.62 -6.53 3.00 -171.83 -0.52 -7.04 16 20 C 0.71 7.99 8.72 -88.59 -0.77 7.22 16 21 O -0.55 -7.81 17.81 5.33 0.09 -7.72 16 22 N -0.68 -6.23 5.73 -16.00 -0.09 -6.33 16 23 C 0.53 5.53 8.06 -10.62 -0.09 5.45 16 24 O -0.46 -5.94 18.02 5.60 0.10 -5.84 16 25 C 0.07 0.76 4.10 -68.05 -0.28 0.48 16 26 H 0.14 1.36 8.14 -51.93 -0.42 0.94 16 27 C 0.12 1.50 6.01 -3.76 -0.02 1.48 16 28 C -0.09 -2.23 8.21 -38.44 -0.32 -2.54 16 29 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 30 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 31 H 0.10 1.51 8.06 -52.49 -0.42 1.08 16 32 H 0.11 1.61 5.46 -52.48 -0.29 1.32 16 33 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16 34 H 0.15 1.89 3.89 -51.93 -0.20 1.69 16 35 H 0.11 0.94 8.00 -51.93 -0.42 0.53 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.43 2.96 8.96 -40.82 -0.37 2.59 16 38 H 0.12 1.63 6.95 -51.93 -0.36 1.27 16 39 H 0.08 0.84 8.01 -51.93 -0.42 0.42 16 40 H 0.13 3.45 6.12 -52.48 -0.32 3.13 16 LS Contribution 336.44 15.07 5.07 5.07 Total: -1.00 -30.49 336.44 -8.48 -38.97 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -4.03 Total: 8.67 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -4.27 Total: 2.05 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: -0.51 Total: -42.01 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: 0.28 Total: -25.61 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.49 -8.48 -38.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332606065.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.258 kcal (2) G-P(sol) polarization free energy of solvation -30.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds