Wall clock time and date at job start Tue Mar 31 2020 07:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.46873 * 2 1 4 4 C 1.50698 * 109.46871 * 240.00312 * 2 1 3 5 5 H 1.08000 * 119.99921 * 274.99725 * 4 2 1 6 6 C 1.37880 * 120.00148 * 95.00249 * 4 2 1 7 7 N 1.31514 * 119.99749 * 184.91354 * 6 4 2 8 8 Si 1.86798 * 119.99945 * 4.91215 * 6 4 2 9 9 H 1.48496 * 109.47331 * 84.83432 * 8 6 4 10 10 H 1.48503 * 109.47024 * 204.83714 * 8 6 4 11 11 H 1.48507 * 109.47077 * 324.83553 * 8 6 4 12 12 N 1.46498 * 109.47057 * 120.00090 * 2 1 3 13 13 C 1.46493 * 120.00063 * 60.00572 * 12 2 1 14 14 S 1.65605 * 119.99754 * 239.99891 * 12 2 1 15 15 O 1.42094 * 106.40119 * 336.46258 * 14 12 2 16 16 O 1.42098 * 106.39633 * 203.54194 * 14 12 2 17 17 N 1.65600 * 107.21398 * 90.00491 * 14 12 2 18 18 C 1.46491 * 120.00238 * 64.99938 * 17 14 12 19 19 C 1.53005 * 109.47378 * 164.99838 * 18 17 14 20 20 N 1.46500 * 109.47374 * 180.02562 * 19 18 17 21 21 C 1.35753 * 119.62601 * 89.99786 * 20 19 18 22 22 C 1.35353 * 120.70395 * 180.27403 * 21 20 19 23 23 C 1.40197 * 119.94374 * 359.43785 * 22 21 20 24 24 C 1.36400 * 119.26424 * 0.57564 * 23 22 21 25 25 C 1.34664 * 119.61995 * 270.02217 * 20 19 18 26 26 O 1.22053 * 119.98761 * 359.97438 * 25 20 19 27 27 H 1.09004 * 109.47012 * 174.97833 * 1 2 3 28 28 H 1.08998 * 109.47279 * 294.97341 * 1 2 3 29 29 H 1.09001 * 109.47418 * 54.98393 * 1 2 3 30 30 H 0.97007 * 119.99822 * 180.02562 * 7 6 4 31 31 H 1.09007 * 109.46937 * 269.99510 * 13 12 2 32 32 H 1.09005 * 109.47468 * 29.99576 * 13 12 2 33 33 H 1.09000 * 109.47766 * 150.00102 * 13 12 2 34 34 H 0.97006 * 119.99556 * 244.99800 * 17 14 12 35 35 H 1.09004 * 109.47615 * 44.99840 * 18 17 14 36 36 H 1.09001 * 109.47424 * 284.99432 * 18 17 14 37 37 H 1.08997 * 109.47031 * 59.99726 * 19 18 17 38 38 H 1.09001 * 109.46511 * 300.00153 * 19 18 17 39 39 H 1.08004 * 119.65011 * 359.97438 * 21 20 19 40 40 H 1.07995 * 120.02853 * 179.69718 * 22 21 20 41 41 H 1.08001 * 120.37010 * 180.31410 * 23 22 21 42 42 H 1.08009 * 120.34953 * 179.73221 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1355 -1.7854 -1.2291 6 6 2.3602 0.0122 -2.3581 7 7 2.7059 -0.6131 -3.4622 8 14 2.3135 1.8792 -2.3174 9 1 3.5991 2.3950 -1.7822 10 1 2.1057 2.3992 -3.6928 11 1 1.1986 2.3275 -1.4449 12 7 2.0183 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 16 2.9704 0.1142 2.2862 15 8 3.5794 1.1830 1.5748 16 8 3.7118 -0.8789 2.9813 17 7 1.9607 0.8089 3.3998 18 6 1.1510 -0.0353 4.2816 19 6 0.6086 0.8074 5.4378 20 7 -0.2006 -0.0371 6.3200 21 6 0.3891 -0.6792 7.3606 22 6 -0.3367 -1.4691 8.1860 23 6 -1.7146 -1.6209 7.9767 24 6 -2.3052 -0.9753 6.9304 25 6 -1.5208 -0.1679 6.0891 26 8 -2.0365 0.4158 5.1494 27 1 -0.3633 -1.0238 -0.0900 28 1 -0.3634 0.4339 0.9316 29 1 -0.3634 0.5897 -0.8416 30 1 2.9370 -0.1047 -4.2555 31 1 0.7377 -2.1444 1.9993 32 1 1.5296 -2.5969 0.4707 33 1 2.4629 -2.5819 1.9863 34 1 1.9054 1.7750 3.4681 35 1 1.7670 -0.8425 4.6781 36 1 0.3188 -0.4568 3.7177 37 1 -0.0073 1.6145 5.0414 38 1 1.4408 1.2288 6.0017 39 1 1.4495 -0.5623 7.5289 40 1 0.1445 -1.9787 9.0077 41 1 -2.3012 -2.2455 8.6341 42 1 -3.3646 -1.0834 6.7503 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337811184.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:16 Heat of formation + Delta-G solvation = -67.696337 kcal Electronic energy + Delta-G solvation = -26863.339123 eV Core-core repulsion = 22971.328242 eV Total energy + Delta-G solvation = -3892.010881 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.62110 -37.17477 -36.87079 -36.43946 -36.22007 -35.35727 -34.09101 -32.46228 -30.22802 -29.94706 -28.87417 -25.69390 -25.16872 -24.60720 -23.78763 -22.33398 -20.72693 -19.08511 -17.87535 -17.63853 -17.45402 -17.15339 -16.84022 -16.56783 -16.12817 -15.62191 -15.01593 -14.88422 -14.75273 -14.38431 -14.24919 -13.59401 -13.21191 -12.96402 -12.72079 -12.67576 -12.48655 -12.36291 -12.15337 -12.02420 -11.94510 -11.84029 -11.65368 -11.58038 -11.38998 -11.13966 -10.81940 -10.68058 -10.44720 -10.34175 -10.18567 -9.79391 -9.56143 -9.35433 -8.60005 -8.29384 -8.09565 -6.17055 -4.17582 0.50286 1.02951 1.57839 2.27544 3.27684 3.34473 3.36675 3.41335 3.46108 3.96562 4.23101 4.27052 4.38177 4.44492 4.54597 4.77179 4.85204 4.91626 4.96709 5.00373 5.16120 5.35222 5.47820 5.57005 5.65743 5.70689 5.84987 5.95204 6.01815 6.12365 6.19059 6.37857 6.41948 6.58032 6.64484 6.76455 6.88513 7.00562 7.19818 7.48828 7.65415 7.77065 8.42965 8.86937 9.44383 10.94728 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.020251 B = 0.003450 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.320497 B = 8113.497526 C = 8497.364101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.234 3.766 3 H 0.056 0.944 4 C -0.517 4.517 5 H 0.083 0.917 6 C 0.079 3.921 7 N -0.888 5.888 8 Si 0.867 3.133 9 H -0.265 1.265 10 H -0.286 1.286 11 H -0.263 1.263 12 N -0.981 5.981 13 C 0.094 3.906 14 S 2.772 3.228 15 O -0.973 6.973 16 O -0.992 6.992 17 N -1.132 6.132 18 C 0.110 3.890 19 C 0.084 3.916 20 N -0.495 5.495 21 C 0.135 3.865 22 C -0.234 4.234 23 C -0.017 4.017 24 C -0.243 4.243 25 C 0.510 3.490 26 O -0.544 6.544 27 H 0.052 0.948 28 H 0.027 0.973 29 H 0.054 0.946 30 H 0.267 0.733 31 H 0.036 0.964 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.413 0.587 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.164 0.836 40 H 0.145 0.855 41 H 0.134 0.866 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.332 -0.429 25.023 25.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.131 3.869 3 H 0.074 0.926 4 C -0.557 4.557 5 H 0.101 0.899 6 C -0.126 4.126 7 N -0.525 5.525 8 Si 0.693 3.307 9 H -0.189 1.189 10 H -0.212 1.212 11 H -0.188 1.188 12 N -0.824 5.824 13 C -0.053 4.053 14 S 2.781 3.219 15 O -0.957 6.957 16 O -0.975 6.975 17 N -0.891 5.891 18 C -0.018 4.018 19 C -0.039 4.039 20 N -0.206 5.206 21 C 0.007 3.993 22 C -0.258 4.258 23 C -0.039 4.039 24 C -0.265 4.265 25 C 0.312 3.688 26 O -0.425 6.425 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.245 0.755 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.127 0.873 38 H 0.118 0.882 39 H 0.181 0.819 40 H 0.163 0.837 41 H 0.152 0.848 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.613 -0.149 24.194 24.837 hybrid contribution -0.422 1.240 0.011 1.310 sum -6.035 1.091 24.205 24.970 Atomic orbital electron populations 1.22235 0.98071 1.01285 0.99035 1.19126 0.91309 0.93165 0.83291 0.92607 1.21132 1.44213 0.95966 0.94394 0.89946 1.24990 0.93815 0.98513 0.95274 1.69888 1.44806 1.36104 1.01714 0.87011 0.80171 0.86255 0.77261 1.18948 1.21193 1.18807 1.57880 1.69852 1.19915 1.34713 1.21365 0.98719 0.82198 1.02978 1.02318 0.73749 0.73278 0.72510 1.93616 1.74229 1.56148 1.71675 1.93524 1.69128 1.60414 1.74469 1.56229 1.62320 1.17326 1.53224 1.21410 0.95670 0.93412 0.91288 1.22183 0.95791 0.94229 0.91724 1.45492 1.10090 1.40231 1.24799 1.22056 0.99353 0.91269 0.86579 1.20674 0.94678 1.06199 1.04214 1.21459 0.94505 0.93487 0.94456 1.22156 1.01671 1.03892 0.98773 1.17243 0.80670 0.84033 0.86860 1.91010 1.70584 1.49176 1.31768 0.92848 0.95417 0.92720 0.92305 0.94543 0.89520 0.91606 0.75453 0.90081 0.90761 0.87296 0.88212 0.81909 0.83695 0.84817 0.83436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.10 37.16 0.34 -2.69 16 2 C 0.23 5.47 2.28 -69.08 -0.16 5.31 16 3 H 0.06 1.37 4.06 -51.93 -0.21 1.16 16 4 C -0.52 -14.17 8.72 -34.44 -0.30 -14.47 16 5 H 0.08 2.39 6.82 -52.49 -0.36 2.03 16 6 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 7 N -0.89 -26.70 13.96 55.43 0.77 -25.93 16 8 Si 0.87 21.87 26.99 -169.99 -4.59 17.29 16 9 H -0.26 -6.85 7.11 56.52 0.40 -6.44 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.26 -6.24 6.82 56.52 0.39 -5.86 16 12 N -0.98 -19.86 3.12 -115.86 -0.36 -20.22 16 13 C 0.09 1.64 9.81 59.84 0.59 2.22 16 14 S 2.77 52.19 6.14 -107.50 -0.66 51.53 16 15 O -0.97 -21.93 16.70 -57.17 -0.95 -22.89 16 16 O -0.99 -19.62 16.21 -57.17 -0.93 -20.55 16 17 N -1.13 -15.18 6.05 -10.61 -0.06 -15.24 16 18 C 0.11 1.26 6.57 -4.04 -0.03 1.24 16 19 C 0.08 0.75 5.47 -4.04 -0.02 0.73 16 20 N -0.49 -4.53 2.58 -119.77 -0.31 -4.84 16 21 C 0.13 0.81 10.28 -16.85 -0.17 0.64 16 22 C -0.23 -1.24 10.01 -39.87 -0.40 -1.64 16 23 C -0.02 -0.11 10.10 -39.51 -0.40 -0.51 16 24 C -0.24 -2.24 9.99 -39.38 -0.39 -2.64 16 25 C 0.51 6.13 7.41 -15.44 -0.11 6.02 16 26 O -0.54 -8.80 16.64 4.87 0.08 -8.72 16 27 H 0.05 1.06 7.84 -51.93 -0.41 0.65 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.09 1.62 6.56 -51.93 -0.34 1.28 16 33 H 0.07 1.08 7.02 -51.93 -0.36 0.72 16 34 H 0.41 4.61 8.65 -34.47 -0.30 4.31 16 35 H 0.08 0.88 7.75 -51.93 -0.40 0.47 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.11 1.09 7.39 -51.93 -0.38 0.71 16 38 H 0.10 0.58 8.01 -51.93 -0.42 0.17 16 39 H 0.16 0.48 8.04 -52.48 -0.42 0.06 16 40 H 0.15 0.39 8.06 -52.49 -0.42 -0.03 16 41 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 42 H 0.15 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 361.84 15.07 5.45 5.45 Total: -1.00 -37.18 361.84 -8.43 -45.61 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -5.71 Total: 2.15 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -1.16 Total: -3.63 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: 0.04 Total: -66.24 kcal Atomic # 8 Polarization: -50.35 SS G_CDS: -1.80 Total: -52.15 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.59 Total: 17.29 kcal Atomic # 16 Polarization: 52.19 SS G_CDS: -0.66 Total: 51.53 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.18 -8.43 -45.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337811184.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.090 kcal (2) G-P(sol) polarization free energy of solvation -37.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds