Wall clock time and date at job start Tue Mar 31 2020 07:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46964 * 2 1 4 4 C 1.50701 * 109.47271 * 119.99403 * 2 1 3 5 5 H 1.07999 * 120.00519 * 119.99874 * 4 2 1 6 6 C 1.37879 * 119.99853 * 300.00452 * 4 2 1 7 7 N 1.31518 * 119.99997 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00304 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47114 * 90.00363 * 8 6 4 10 10 H 1.48504 * 109.46960 * 210.00422 * 8 6 4 11 11 H 1.48504 * 109.46846 * 330.00204 * 8 6 4 12 12 N 1.46494 * 109.47390 * 239.99427 * 2 1 3 13 13 C 1.46502 * 120.00008 * 300.00425 * 12 2 1 14 14 S 1.65596 * 120.00007 * 119.99639 * 12 2 1 15 15 O 1.42107 * 106.40180 * 156.46516 * 14 12 2 16 16 O 1.42099 * 106.40377 * 23.54301 * 14 12 2 17 17 N 1.65601 * 107.21976 * 270.00182 * 14 12 2 18 18 C 1.46500 * 120.00009 * 65.00305 * 17 14 12 19 19 C 1.52997 * 109.47473 * 164.99896 * 18 17 14 20 20 N 1.46505 * 109.47212 * 179.97438 * 19 18 17 21 21 C 1.35764 * 119.61995 * 90.00106 * 20 19 18 22 22 C 1.35349 * 120.69993 * 179.97438 * 21 20 19 23 23 C 1.40198 * 119.94836 * 0.02562 * 22 21 20 24 24 C 1.36408 * 119.26538 * 0.02562 * 23 22 21 25 25 C 1.34656 * 119.62335 * 269.73025 * 20 19 18 26 26 O 1.22061 * 119.98888 * 359.97438 * 25 20 19 27 27 H 1.08993 * 109.47112 * 60.00459 * 1 2 3 28 28 H 1.08999 * 109.47126 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46855 * 300.00163 * 1 2 3 30 30 H 0.97002 * 120.00334 * 179.97438 * 7 6 4 31 31 H 1.09007 * 109.46852 * 269.99495 * 13 12 2 32 32 H 1.09004 * 109.46972 * 29.99279 * 13 12 2 33 33 H 1.08995 * 109.47436 * 149.99775 * 13 12 2 34 34 H 0.96999 * 120.00475 * 244.99479 * 17 14 12 35 35 H 1.09002 * 109.47129 * 44.99639 * 18 17 14 36 36 H 1.08998 * 109.46845 * 285.00446 * 18 17 14 37 37 H 1.09002 * 109.47153 * 59.99757 * 19 18 17 38 38 H 1.09001 * 109.46832 * 299.99948 * 19 18 17 39 39 H 1.07993 * 119.65277 * 359.97438 * 21 20 19 40 40 H 1.07993 * 120.02897 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.37238 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.34721 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 2.1372 -0.8593 3.5567 8 14 0.6258 1.2800 2.6541 9 1 -0.8021 0.8746 2.6993 10 1 0.9771 1.9957 3.9070 11 1 0.8490 2.1774 1.4921 12 7 2.0184 -0.6907 -1.1960 13 6 1.6644 -2.0933 -1.4278 14 16 2.9704 0.1140 -2.2862 15 8 3.7118 -0.8792 -2.9814 16 8 3.5794 1.1829 -1.5749 17 7 1.9607 0.8087 -3.3998 18 6 1.0291 1.8616 -2.9876 19 6 0.4946 2.5833 -4.2263 20 7 -0.4375 3.6357 -3.8141 21 6 0.0298 4.8856 -3.5638 22 6 -0.8119 5.8745 -3.1822 23 6 -2.1819 5.6121 -3.0415 24 6 -2.6493 4.3554 -3.2923 25 6 -1.7486 3.3537 -3.6930 26 8 -2.1543 2.2265 -3.9268 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.9032 -0.5276 4.4377 31 1 2.4158 -2.7378 -0.9714 32 1 0.6904 -2.3002 -0.9844 33 1 1.6238 -2.2854 -2.4999 34 1 1.9861 0.5187 -4.3251 35 1 1.5475 2.5749 -2.3469 36 1 0.1985 1.4174 -2.4391 37 1 -0.0238 1.8699 -4.8670 38 1 1.3253 3.0274 -4.7747 39 1 1.0843 5.0931 -3.6703 40 1 -0.4284 6.8647 -2.9855 41 1 -2.8595 6.3959 -2.7370 42 1 -3.7014 4.1340 -3.1897 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337811186.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:23 Heat of formation + Delta-G solvation = -58.590030 kcal Electronic energy + Delta-G solvation = -27242.743327 eV Core-core repulsion = 23351.127325 eV Total energy + Delta-G solvation = -3891.616002 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.56159 -37.12411 -36.95494 -36.47240 -36.27263 -35.40586 -34.06876 -32.52016 -30.16733 -30.06916 -28.85607 -25.83698 -25.07138 -24.56191 -23.73359 -22.28086 -20.96483 -19.17364 -17.86986 -17.56926 -17.27475 -17.19784 -16.71189 -16.48027 -16.20951 -15.52098 -15.27676 -14.84239 -14.76959 -14.35128 -14.32340 -13.70956 -13.42979 -12.97008 -12.82381 -12.65069 -12.33640 -12.31918 -12.23227 -12.06443 -11.95108 -11.89664 -11.69181 -11.61094 -11.53838 -11.23195 -11.10388 -10.49243 -10.38848 -10.18611 -10.13449 -9.62058 -9.55181 -9.42187 -8.65723 -8.23228 -8.15989 -6.14407 -4.14997 0.56842 0.97552 1.64435 2.32598 3.20998 3.29429 3.32804 3.33812 3.42656 3.92186 4.28671 4.32246 4.32452 4.47947 4.60565 4.80561 4.83408 4.97607 5.01181 5.05739 5.14345 5.35122 5.44630 5.54708 5.65679 5.75158 5.87361 6.01968 6.02251 6.16242 6.24944 6.25239 6.33984 6.44523 6.54870 6.76701 6.82039 6.93170 7.25642 7.35736 7.60366 7.82011 8.44963 8.90086 9.45217 10.98557 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.011195 B = 0.004964 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.511966 B = 5638.790844 C = 7098.093953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.239 3.761 3 H 0.055 0.945 4 C -0.522 4.522 5 H 0.083 0.917 6 C 0.075 3.925 7 N -0.893 5.893 8 Si 0.881 3.119 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.266 1.266 12 N -0.983 5.983 13 C 0.109 3.891 14 S 2.783 3.217 15 O -0.986 6.986 16 O -0.972 6.972 17 N -1.131 6.131 18 C 0.103 3.897 19 C 0.086 3.914 20 N -0.495 5.495 21 C 0.134 3.866 22 C -0.233 4.233 23 C -0.017 4.017 24 C -0.244 4.244 25 C 0.511 3.489 26 O -0.547 6.547 27 H 0.032 0.968 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.266 0.734 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.412 0.588 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.164 0.836 40 H 0.146 0.854 41 H 0.134 0.866 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.535 13.048 -16.833 22.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.134 3.866 3 H 0.073 0.927 4 C -0.561 4.561 5 H 0.101 0.899 6 C -0.128 4.128 7 N -0.531 5.531 8 Si 0.711 3.289 9 H -0.203 1.203 10 H -0.220 1.220 11 H -0.191 1.191 12 N -0.825 5.825 13 C -0.037 4.037 14 S 2.791 3.209 15 O -0.970 6.970 16 O -0.955 6.955 17 N -0.890 5.890 18 C -0.025 4.025 19 C -0.037 4.037 20 N -0.206 5.206 21 C 0.007 3.993 22 C -0.256 4.256 23 C -0.038 4.038 24 C -0.265 4.265 25 C 0.313 3.687 26 O -0.428 6.428 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.245 0.755 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.126 0.874 38 H 0.118 0.882 39 H 0.182 0.818 40 H 0.164 0.836 41 H 0.152 0.848 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.814 12.388 -16.591 21.506 hybrid contribution -1.059 0.735 0.007 1.289 sum -6.873 13.123 -16.584 22.237 Atomic orbital electron populations 1.22555 0.99096 1.01698 0.99003 1.19100 0.90323 0.93517 0.83634 0.92719 1.21136 1.32527 1.14315 0.88107 0.89917 1.24901 0.95694 0.96529 0.95711 1.69872 1.45144 1.40092 0.97950 0.86966 0.80613 0.83870 0.77445 1.20334 1.22022 1.19089 1.57404 1.70038 1.20236 1.34830 1.21203 1.02043 0.81375 0.99046 1.01928 0.73357 0.73202 0.72441 1.93578 1.69082 1.59766 1.74594 1.93595 1.73642 1.56011 1.72299 1.56154 1.57050 1.51351 1.24439 1.21554 0.93873 0.90446 0.96620 1.22154 0.92913 0.90855 0.97825 1.45467 1.09644 1.09947 1.55567 1.22060 1.00392 0.83337 0.93485 1.20681 0.93597 1.00222 1.11147 1.21466 0.95419 0.96483 0.90470 1.22149 1.01038 0.93424 1.09933 1.17226 0.81059 0.90109 0.80269 1.90987 1.76397 1.22650 1.52807 0.94892 0.91952 0.93201 0.92421 0.92641 0.90835 0.92940 0.75540 0.89804 0.90288 0.87353 0.88210 0.81840 0.83644 0.84790 0.83435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 8.65 37.16 0.32 -3.11 16 2 C 0.24 5.51 2.21 -69.08 -0.15 5.36 16 3 H 0.06 1.32 5.97 -51.93 -0.31 1.01 16 4 C -0.52 -14.37 8.95 -34.44 -0.31 -14.68 16 5 H 0.08 2.47 7.89 -52.49 -0.41 2.06 16 6 C 0.07 2.12 5.45 -17.82 -0.10 2.02 16 7 N -0.89 -26.88 13.96 55.43 0.77 -26.10 16 8 Si 0.88 21.43 24.37 -169.99 -4.14 17.29 16 9 H -0.28 -6.48 6.87 56.52 0.39 -6.09 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.27 -6.15 6.53 56.52 0.37 -5.78 16 12 N -0.98 -19.60 3.12 -115.85 -0.36 -19.97 16 13 C 0.11 1.92 9.53 59.85 0.57 2.49 16 14 S 2.78 50.71 6.09 -107.50 -0.66 50.06 16 15 O -0.99 -19.35 17.21 -57.17 -0.98 -20.33 16 16 O -0.97 -20.87 16.17 -57.17 -0.92 -21.80 16 17 N -1.13 -14.61 6.05 -10.61 -0.06 -14.67 16 18 C 0.10 1.30 6.57 -4.04 -0.03 1.27 16 19 C 0.09 0.81 5.48 -4.04 -0.02 0.79 16 20 N -0.49 -5.07 2.58 -119.77 -0.31 -5.38 16 21 C 0.13 0.99 10.28 -16.84 -0.17 0.82 16 22 C -0.23 -1.57 10.01 -39.88 -0.40 -1.96 16 23 C -0.02 -0.13 10.10 -39.51 -0.40 -0.53 16 24 C -0.24 -2.54 9.99 -39.37 -0.39 -2.94 16 25 C 0.51 6.67 7.41 -15.45 -0.11 6.55 16 26 O -0.55 -9.14 16.63 4.86 0.08 -9.06 16 27 H 0.03 0.60 6.18 -51.93 -0.32 0.27 16 28 H 0.06 1.25 6.66 -51.93 -0.35 0.90 16 29 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 30 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.25 6.43 -51.93 -0.33 0.91 16 33 H 0.05 0.76 7.79 -51.93 -0.40 0.36 16 34 H 0.41 4.05 8.65 -34.48 -0.30 3.75 16 35 H 0.08 1.09 7.75 -51.93 -0.40 0.69 16 36 H 0.08 1.15 6.18 -51.93 -0.32 0.83 16 37 H 0.11 1.07 7.38 -51.93 -0.38 0.69 16 38 H 0.10 0.61 8.01 -51.93 -0.42 0.20 16 39 H 0.16 0.69 8.04 -52.49 -0.42 0.27 16 40 H 0.15 0.60 8.06 -52.49 -0.42 0.17 16 41 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 42 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 352.17 15.07 5.31 5.31 Total: -1.00 -37.30 352.17 -7.89 -45.19 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -5.41 Total: 3.39 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -1.19 Total: -3.91 kcal Atomic # 7 Polarization: -66.16 SS G_CDS: 0.04 Total: -66.12 kcal Atomic # 8 Polarization: -49.36 SS G_CDS: -1.83 Total: -51.19 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.14 Total: 17.29 kcal Atomic # 16 Polarization: 50.71 SS G_CDS: -0.66 Total: 50.06 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -37.30 -7.89 -45.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337811186.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.403 kcal (2) G-P(sol) polarization free energy of solvation -37.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds