Wall clock time and date at job start Tue Mar 31 2020 07:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35679 * 116.99943 * 2 1 4 4 C 1.38914 * 119.68343 * 179.97438 * 3 2 1 5 5 C 1.38379 * 119.11285 * 180.02562 * 4 3 2 6 6 C 1.38831 * 118.48363 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.35636 * 179.97438 * 6 5 4 8 8 N 1.46499 * 109.46995 * 90.00177 * 7 6 5 9 9 S 1.65597 * 119.99926 * 165.27893 * 8 7 6 10 10 O 1.42096 * 106.40195 * 178.26439 * 9 8 7 11 11 O 1.42108 * 106.40105 * 311.18495 * 9 8 7 12 12 N 1.65605 * 107.21939 * 64.71969 * 9 8 7 13 13 C 1.46505 * 119.99527 * 90.00151 * 12 9 8 14 14 C 1.46494 * 120.00164 * 270.00117 * 12 9 8 15 15 H 1.09000 * 109.47375 * 359.97438 * 14 12 9 16 16 C 1.53002 * 109.47135 * 120.00275 * 14 12 9 17 17 C 1.50704 * 109.46994 * 240.00053 * 14 12 9 18 18 H 1.08003 * 119.99999 * 0.02562 * 17 14 12 19 19 C 1.37877 * 119.99981 * 180.02562 * 17 14 12 20 20 N 1.31518 * 120.00273 * 179.97438 * 19 17 14 21 21 Si 1.86803 * 120.00055 * 0.02562 * 19 17 14 22 22 H 1.48496 * 109.47420 * 89.99545 * 21 19 17 23 23 H 1.48495 * 109.46958 * 210.00373 * 21 19 17 24 24 H 1.48507 * 109.47004 * 329.99703 * 21 19 17 25 25 C 1.38049 * 119.28920 * 0.25741 * 6 5 4 26 26 N 1.31965 * 120.83205 * 359.44951 * 25 6 5 27 27 H 1.09001 * 109.47047 * 59.99856 * 1 2 3 28 28 H 1.09000 * 109.46894 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46903 * 300.00296 * 1 2 3 30 30 H 1.07997 * 120.44738 * 0.02562 * 4 3 2 31 31 H 1.07996 * 120.75995 * 180.02562 * 5 4 3 32 32 H 1.09007 * 109.46980 * 330.00195 * 7 6 5 33 33 H 1.08995 * 109.47206 * 210.00379 * 7 6 5 34 34 H 0.97001 * 119.99790 * 344.99681 * 8 7 6 35 35 H 1.09006 * 109.46779 * 90.00114 * 13 12 9 36 36 H 1.09000 * 109.47139 * 209.99765 * 13 12 9 37 37 H 1.09001 * 109.47179 * 330.00258 * 13 12 9 38 38 H 1.09002 * 109.46860 * 300.00138 * 16 14 12 39 39 H 1.09000 * 109.47334 * 59.99552 * 16 14 12 40 40 H 1.08999 * 109.47308 * 179.97438 * 16 14 12 41 41 H 0.96997 * 119.99946 * 179.97438 * 20 19 17 42 42 H 1.07997 * 119.57937 * 179.72758 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2740 0.0005 5 6 4.0486 2.5131 0.0011 6 6 3.2505 3.6491 0.0005 7 6 3.8768 5.0198 0.0016 8 7 4.0813 5.4644 -1.3792 9 16 4.4083 7.0564 -1.6966 10 8 4.5922 7.1558 -3.1022 11 8 3.4407 7.8147 -0.9838 12 7 5.8738 7.4027 -1.0075 13 6 7.1066 7.2214 -1.7781 14 6 5.9375 7.8903 0.3724 15 1 4.9289 7.9611 0.7797 16 6 6.7630 6.9192 1.2189 17 6 6.5844 9.2513 0.3949 18 1 6.9146 9.7075 -0.5266 19 6 6.7546 9.9139 1.5920 20 7 7.3196 11.1014 1.6117 21 14 6.1841 9.1245 3.1859 22 1 7.2889 8.3162 3.7613 23 1 5.7914 10.1835 4.1499 24 1 5.0180 8.2461 2.9136 25 6 1.8771 3.5097 0.0048 26 7 1.3187 2.3140 -0.0014 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 4.0229 0.3696 0.0005 31 1 5.1254 2.5947 0.0011 32 1 4.8368 4.9803 0.5166 33 1 3.2178 5.7200 0.5150 34 1 4.0291 4.8255 -2.1072 35 1 7.3430 8.1442 -2.3079 36 1 7.9242 6.9710 -1.1020 37 1 6.9700 6.4141 -2.4976 38 1 6.2951 5.9348 1.2025 39 1 7.7715 6.8489 0.8114 40 1 6.8108 7.2822 2.2455 41 1 7.4390 11.5677 2.4538 42 1 1.2518 4.3902 0.0089 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337854137.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:22 Heat of formation + Delta-G solvation = -62.123354 kcal Electronic energy + Delta-G solvation = -26590.225894 eV Core-core repulsion = 22698.456676 eV Total energy + Delta-G solvation = -3891.769218 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 3.96 seconds Orbital eigenvalues (eV) -40.93498 -38.42934 -36.87139 -36.45353 -35.43035 -35.33892 -32.67125 -32.52731 -30.97642 -30.08928 -27.78540 -25.85646 -25.68433 -25.05051 -23.74876 -22.18665 -20.96604 -19.01447 -18.70050 -17.52157 -17.41054 -17.23921 -16.53886 -16.32855 -16.18102 -15.33640 -15.03737 -14.78503 -14.59516 -14.41080 -13.80849 -13.66047 -13.49100 -13.43290 -13.26693 -12.84729 -12.42567 -12.34058 -12.22208 -12.11153 -11.94152 -11.61608 -11.55694 -11.52685 -11.38188 -11.24415 -11.10221 -10.49890 -10.20904 -10.18788 -9.98779 -9.63097 -9.47839 -9.40986 -8.76159 -8.66488 -8.16507 -6.15093 -4.15950 0.73275 0.92411 1.15545 2.77957 3.18813 3.27664 3.30498 3.33935 3.56218 3.98862 4.02624 4.31431 4.41989 4.65044 4.68313 4.82442 4.86754 4.98919 5.00405 5.13427 5.22835 5.28103 5.35643 5.47060 5.52443 5.63763 5.80902 5.97209 6.01687 6.11750 6.12749 6.21852 6.29132 6.41074 6.53071 6.73813 6.90320 6.99647 7.23658 7.36521 7.54246 7.59347 8.44187 8.89639 9.44319 10.97955 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.016943 B = 0.003452 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.209378 B = 8108.342115 C = 8899.170246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.310 6.310 3 C 0.319 3.681 4 C -0.192 4.192 5 C -0.024 4.024 6 C -0.182 4.182 7 C 0.165 3.835 8 N -1.131 6.131 9 S 2.780 3.220 10 O -0.989 6.989 11 O -0.972 6.972 12 N -0.984 5.984 13 C 0.110 3.890 14 C 0.238 3.762 15 H 0.058 0.942 16 C -0.165 4.165 17 C -0.522 4.522 18 H 0.082 0.918 19 C 0.074 3.926 20 N -0.894 5.894 21 Si 0.881 3.119 22 H -0.277 1.277 23 H -0.294 1.294 24 H -0.264 1.264 25 C 0.159 3.841 26 N -0.540 5.540 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.142 0.858 31 H 0.146 0.854 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.411 0.589 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.033 0.967 39 H 0.061 0.939 40 H 0.050 0.950 41 H 0.266 0.734 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.595 -21.594 -2.295 23.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.217 6.217 3 C 0.140 3.860 4 C -0.212 4.212 5 C -0.050 4.050 6 C -0.186 4.186 7 C 0.039 3.961 8 N -0.890 5.890 9 S 2.789 3.211 10 O -0.973 6.973 11 O -0.955 6.955 12 N -0.826 5.826 13 C -0.036 4.036 14 C 0.133 3.867 15 H 0.075 0.925 16 C -0.224 4.224 17 C -0.562 4.562 18 H 0.100 0.900 19 C -0.129 4.129 20 N -0.531 5.531 21 Si 0.711 3.289 22 H -0.204 1.204 23 H -0.221 1.221 24 H -0.189 1.189 25 C 0.003 3.997 26 N -0.264 5.264 27 H 0.078 0.922 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.160 0.840 31 H 0.164 0.836 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.244 0.756 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.904 -21.038 -2.524 22.984 hybrid contribution 0.730 -0.676 0.887 1.333 sum -8.174 -21.714 -1.637 23.259 Atomic orbital electron populations 1.22868 0.77127 1.02911 1.02614 1.86236 1.23030 1.24634 1.87760 1.19922 0.89504 0.84761 0.91784 1.21066 0.91959 0.99570 1.08615 1.21414 1.00834 0.90551 0.92201 1.20731 0.94917 0.96002 1.06966 1.20065 1.00973 0.92042 0.83049 1.56327 1.88918 1.30348 1.13390 1.01978 0.73599 0.72750 0.72784 1.93571 1.86750 1.85947 1.30998 1.93600 1.59211 1.68268 1.74436 1.57439 1.21324 1.79149 1.24706 1.21186 0.87424 1.00362 0.94654 1.19102 0.97520 0.93754 0.76310 0.92490 1.22570 1.01800 0.97848 1.00190 1.21146 1.39903 0.99482 0.95627 0.89987 1.24919 0.94449 0.94742 0.98826 1.69873 1.43016 1.13328 1.26907 0.86960 0.79496 0.78625 0.83788 1.20397 1.22082 1.18853 1.22459 0.92339 0.93702 0.91245 1.67381 1.40800 0.98730 1.19450 0.92223 0.88659 0.92205 0.83976 0.83645 0.90192 0.89168 0.75642 0.92750 0.90907 0.93009 0.94841 0.92027 0.93138 0.92422 0.81875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.38 101.05 1.05 1.35 16 2 O -0.31 -3.16 10.48 -18.74 -0.20 -3.36 16 3 C 0.32 3.49 7.49 -17.12 -0.13 3.37 16 4 C -0.19 -1.77 10.04 -39.28 -0.39 -2.17 16 5 C -0.02 -0.21 9.85 -39.31 -0.39 -0.60 16 6 C -0.18 -1.87 5.29 -104.47 -0.55 -2.42 16 7 C 0.17 1.92 6.39 -5.19 -0.03 1.88 16 8 N -1.13 -14.27 6.05 -11.66 -0.07 -14.34 16 9 S 2.78 49.40 6.09 -107.50 -0.65 48.75 16 10 O -0.99 -19.31 17.21 -57.17 -0.98 -20.29 16 11 O -0.97 -20.67 16.19 -57.17 -0.93 -21.59 16 12 N -0.98 -18.51 3.12 -115.85 -0.36 -18.87 16 13 C 0.11 1.81 9.53 59.85 0.57 2.38 16 14 C 0.24 5.19 2.21 -69.08 -0.15 5.03 16 15 H 0.06 1.31 5.97 -51.93 -0.31 1.00 16 16 C -0.17 -3.10 8.65 37.16 0.32 -2.77 16 17 C -0.52 -13.97 8.95 -34.44 -0.31 -14.28 16 18 H 0.08 2.40 7.89 -52.48 -0.41 1.99 16 19 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 20 N -0.89 -26.50 13.96 55.43 0.77 -25.72 16 21 Si 0.88 20.70 24.37 -169.99 -4.14 16.56 16 22 H -0.28 -6.18 6.87 56.52 0.39 -5.79 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.26 -5.82 6.53 56.52 0.37 -5.46 16 25 C 0.16 1.72 10.85 -17.56 -0.19 1.52 16 26 N -0.54 -6.23 9.22 -13.33 -0.12 -6.35 16 27 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 30 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.08 0.87 6.11 -51.93 -0.32 0.56 16 33 H 0.09 1.11 7.71 -51.93 -0.40 0.71 16 34 H 0.41 4.32 8.64 -34.47 -0.30 4.02 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.12 6.43 -51.93 -0.33 0.79 16 37 H 0.05 0.69 7.79 -51.93 -0.40 0.29 16 38 H 0.03 0.49 6.16 -51.93 -0.32 0.17 16 39 H 0.06 1.10 6.66 -51.93 -0.35 0.76 16 40 H 0.05 1.01 3.27 -51.93 -0.17 0.84 16 41 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 353.88 15.07 5.33 5.33 Total: -1.00 -34.30 353.88 -7.11 -41.41 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -5.45 Total: 3.26 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -0.30 Total: -4.77 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: 0.22 Total: -65.29 kcal Atomic # 8 Polarization: -43.14 SS G_CDS: -2.11 Total: -45.24 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.14 Total: 16.56 kcal Atomic # 16 Polarization: 49.40 SS G_CDS: -0.65 Total: 48.75 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.30 -7.11 -41.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337854137.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.713 kcal (2) G-P(sol) polarization free energy of solvation -34.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.96 seconds