Wall clock time and date at job start Tue Mar 31 2020 07:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35675 * 117.00098 * 2 1 4 4 C 1.38918 * 119.68478 * 179.97438 * 3 2 1 5 5 C 1.38383 * 119.11319 * 180.02562 * 4 3 2 6 6 C 1.38821 * 118.48138 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.35477 * 179.97438 * 6 5 4 8 8 N 1.46508 * 109.47193 * 89.99922 * 7 6 5 9 9 S 1.65595 * 119.99876 * 165.00215 * 8 7 6 10 10 O 1.42105 * 106.40149 * 178.54167 * 9 8 7 11 11 O 1.42098 * 106.40317 * 311.46040 * 9 8 7 12 12 N 1.65606 * 107.22013 * 65.00349 * 9 8 7 13 13 C 1.46504 * 119.99819 * 269.99910 * 12 9 8 14 14 C 1.46489 * 120.00129 * 89.99663 * 12 9 8 15 15 H 1.09006 * 109.47494 * 0.02562 * 14 12 9 16 16 C 1.53001 * 109.47367 * 239.99892 * 14 12 9 17 17 C 1.50706 * 109.47403 * 120.00178 * 14 12 9 18 18 H 1.07999 * 119.99433 * 359.97438 * 17 14 12 19 19 C 1.37871 * 120.00236 * 179.97438 * 17 14 12 20 20 N 1.31509 * 120.00376 * 0.02562 * 19 17 14 21 21 Si 1.86802 * 119.99846 * 179.97438 * 19 17 14 22 22 H 1.48504 * 109.47219 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47051 * 120.00118 * 21 19 17 24 24 H 1.48497 * 109.47424 * 239.99932 * 21 19 17 25 25 C 1.38045 * 119.29320 * 0.25403 * 6 5 4 26 26 N 1.31965 * 120.83367 * 359.45230 * 25 6 5 27 27 H 1.09001 * 109.47770 * 59.99590 * 1 2 3 28 28 H 1.09001 * 109.47229 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47026 * 299.99755 * 1 2 3 30 30 H 1.08000 * 120.44781 * 0.02740 * 4 3 2 31 31 H 1.07998 * 120.75647 * 180.02562 * 5 4 3 32 32 H 1.09006 * 109.47277 * 330.00283 * 7 6 5 33 33 H 1.08993 * 109.47815 * 210.00079 * 7 6 5 34 34 H 0.96997 * 120.00091 * 345.00187 * 8 7 6 35 35 H 1.08999 * 109.47095 * 89.99844 * 13 12 9 36 36 H 1.08991 * 109.46942 * 210.00257 * 13 12 9 37 37 H 1.09009 * 109.46796 * 329.99896 * 13 12 9 38 38 H 1.08997 * 109.47095 * 300.00351 * 16 14 12 39 39 H 1.09010 * 109.46956 * 60.00176 * 16 14 12 40 40 H 1.09001 * 109.47294 * 179.97438 * 16 14 12 41 41 H 0.96998 * 120.00587 * 179.97438 * 20 19 17 42 42 H 1.08003 * 119.58283 * 179.72829 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4325 1.2739 0.0005 5 6 4.0485 2.5131 0.0011 6 6 3.2504 3.6490 0.0016 7 6 3.8767 5.0197 0.0028 8 7 4.0802 5.4649 -1.3781 9 16 4.4002 7.0583 -1.6957 10 8 4.5782 7.1592 -3.1020 11 8 3.4327 7.8126 -0.9787 12 7 5.8672 7.4094 -1.0123 13 6 5.9346 7.8963 0.3678 14 6 7.0975 7.2330 -1.7877 15 1 6.8498 6.8667 -2.7840 16 6 8.0041 6.2220 -1.0829 17 6 7.8128 8.5545 -1.9025 18 1 7.3927 9.4375 -1.4440 19 6 9.0035 8.6363 -2.5927 20 7 9.5149 7.5612 -3.1514 21 14 9.8897 10.2745 -2.7355 22 1 9.1122 11.3215 -2.0252 23 1 11.2393 10.1619 -2.1261 24 1 10.0226 10.6422 -4.1681 25 6 1.8771 3.5096 0.0069 26 7 1.3185 2.3140 0.0006 27 1 -0.3635 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 4.0228 0.3695 0.0005 31 1 5.1254 2.5946 0.0011 32 1 4.8371 4.9800 0.5169 33 1 3.2182 5.7197 0.5168 34 1 4.0274 4.8263 -2.1063 35 1 6.0255 7.0494 1.0479 36 1 6.8008 8.5480 0.4812 37 1 5.0274 8.4539 0.6010 38 1 8.2518 6.5887 -0.0868 39 1 7.4868 5.2661 -0.9999 40 1 8.9194 6.0904 -1.6601 41 1 10.3524 7.6187 -3.6373 42 1 1.2518 4.3902 0.0118 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337854140.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:35 Heat of formation + Delta-G solvation = -73.214117 kcal Electronic energy + Delta-G solvation = -26320.257803 eV Core-core repulsion = 22428.007654 eV Total energy + Delta-G solvation = -3892.250150 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.89222 -38.38705 -36.70325 -36.18567 -35.33261 -35.24618 -32.61832 -32.59217 -30.91156 -29.12309 -27.74737 -25.67107 -25.46263 -25.18300 -23.70110 -22.14168 -20.83193 -18.86288 -18.66054 -17.45566 -17.32625 -16.91586 -16.63522 -16.26509 -15.88325 -15.23709 -14.87505 -14.68360 -14.54605 -14.25662 -13.66688 -13.56524 -13.45241 -13.29395 -13.14684 -12.66272 -12.36308 -12.11883 -12.03428 -11.84719 -11.56267 -11.46432 -11.36629 -11.30295 -11.23339 -10.93932 -10.84533 -10.46675 -10.24306 -10.13731 -10.08636 -9.93140 -9.36916 -9.27260 -8.71412 -8.47469 -7.99821 -6.09324 -4.15761 0.79923 0.98054 1.28231 2.81889 3.26552 3.34908 3.36717 3.39833 3.65441 4.05713 4.10714 4.38734 4.46798 4.69728 4.73670 4.87181 4.99438 5.02801 5.03844 5.22702 5.26641 5.33190 5.39934 5.55040 5.66573 5.69812 5.91665 6.04425 6.10335 6.16984 6.33209 6.64449 6.75033 6.81706 6.94355 7.00780 7.10522 7.46197 7.57763 7.61138 7.77419 8.02963 8.25541 8.86622 9.50145 10.96424 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.025018 B = 0.002858 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.910355 B = 9795.809015 C =10307.430812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.310 6.310 3 C 0.319 3.681 4 C -0.191 4.191 5 C -0.023 4.023 6 C -0.183 4.183 7 C 0.172 3.828 8 N -1.131 6.131 9 S 2.779 3.221 10 O -0.973 6.973 11 O -0.996 6.996 12 N -0.988 5.988 13 C 0.095 3.905 14 C 0.268 3.732 15 H 0.059 0.941 16 C -0.146 4.146 17 C -0.520 4.520 18 H 0.063 0.937 19 C 0.063 3.937 20 N -0.890 5.890 21 Si 0.898 3.102 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.157 3.843 26 N -0.541 5.541 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.413 0.587 35 H 0.037 0.963 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.033 0.967 39 H 0.010 0.990 40 H 0.092 0.908 41 H 0.263 0.737 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.507 -13.051 9.037 20.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.216 6.216 3 C 0.140 3.860 4 C -0.211 4.211 5 C -0.049 4.049 6 C -0.187 4.187 7 C 0.045 3.955 8 N -0.889 5.889 9 S 2.788 3.212 10 O -0.957 6.957 11 O -0.980 6.980 12 N -0.831 5.831 13 C -0.052 4.052 14 C 0.165 3.835 15 H 0.076 0.924 16 C -0.206 4.206 17 C -0.559 4.559 18 H 0.082 0.918 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.726 3.274 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.209 1.209 25 C 0.001 3.999 26 N -0.265 5.265 27 H 0.078 0.922 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.161 0.839 31 H 0.165 0.835 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.245 0.755 35 H 0.055 0.945 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.029 0.971 40 H 0.110 0.890 41 H 0.073 0.927 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.729 -12.714 8.602 20.594 hybrid contribution 1.482 0.383 -0.219 1.546 sum -12.247 -12.331 8.383 19.296 Atomic orbital electron populations 1.22858 0.77191 1.02891 1.02559 1.86235 1.22979 1.24658 1.87776 1.19915 0.89503 0.84727 0.91854 1.21086 0.91936 0.99647 1.08461 1.21452 1.00990 0.90542 0.91886 1.20732 0.94869 0.96097 1.06974 1.19926 1.00376 0.91867 0.83318 1.56339 1.89068 1.30318 1.13224 1.01955 0.73218 0.72788 0.73258 1.93622 1.86348 1.85447 1.30262 1.93524 1.60175 1.69243 1.75025 1.57653 1.23726 1.78829 1.22888 1.21338 1.03435 0.98774 0.81653 1.18733 0.79168 0.95808 0.89821 0.92367 1.22106 1.02574 0.95608 1.00271 1.21372 1.06014 0.94378 1.34176 0.91838 1.24906 0.97126 0.96774 0.95100 1.69861 1.20128 1.27775 1.35096 0.86447 0.79322 0.83729 0.77936 1.19726 1.21015 1.20907 1.22418 0.92292 0.93663 0.91532 1.67366 1.40810 0.98739 1.19547 0.92238 0.88679 0.92264 0.83941 0.83510 0.90633 0.89555 0.75472 0.94491 0.89798 0.91855 0.94831 0.97135 0.88982 0.92750 0.82002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.38 101.05 1.05 1.36 16 2 O -0.31 -3.26 10.48 -18.73 -0.20 -3.46 16 3 C 0.32 3.59 7.49 -17.12 -0.13 3.47 16 4 C -0.19 -1.88 10.04 -39.28 -0.39 -2.27 16 5 C -0.02 -0.22 9.85 -39.31 -0.39 -0.60 16 6 C -0.18 -1.89 5.29 -104.48 -0.55 -2.44 16 7 C 0.17 1.92 6.39 -5.19 -0.03 1.88 16 8 N -1.13 -15.55 6.05 -11.65 -0.07 -15.62 16 9 S 2.78 51.66 6.14 -107.50 -0.66 51.00 16 10 O -0.97 -22.10 16.70 -57.17 -0.95 -23.05 16 11 O -1.00 -19.50 16.21 -57.17 -0.93 -20.42 16 12 N -0.99 -19.42 3.12 -115.85 -0.36 -19.78 16 13 C 0.09 1.57 9.65 59.85 0.58 2.15 16 14 C 0.27 6.32 2.62 -69.08 -0.18 6.14 16 15 H 0.06 1.54 6.91 -51.93 -0.36 1.18 16 16 C -0.15 -3.17 8.97 37.16 0.33 -2.84 16 17 C -0.52 -13.67 7.99 -34.44 -0.28 -13.94 16 18 H 0.06 1.66 7.33 -52.49 -0.38 1.28 16 19 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 20 N -0.89 -24.39 11.32 55.43 0.63 -23.76 16 21 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 25 C 0.16 1.68 10.85 -17.57 -0.19 1.49 16 26 N -0.54 -6.28 9.22 -13.33 -0.12 -6.40 16 27 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 30 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.15 1.17 8.06 -52.49 -0.42 0.74 16 32 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 33 H 0.09 0.92 7.70 -51.93 -0.40 0.52 16 34 H 0.41 5.22 8.64 -34.47 -0.30 4.92 16 35 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 1.49 7.02 -51.93 -0.36 1.12 16 37 H 0.06 0.99 7.02 -51.92 -0.36 0.62 16 38 H 0.03 0.68 7.67 -51.93 -0.40 0.29 16 39 H 0.01 0.18 8.14 -51.92 -0.42 -0.24 16 40 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 41 H 0.26 6.85 8.31 -40.82 -0.34 6.52 16 42 H 0.16 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 364.51 15.07 5.49 5.49 Total: -1.00 -32.87 364.51 -8.29 -41.16 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -5.82 Total: 3.04 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -0.28 Total: -4.02 kcal Atomic # 7 Polarization: -65.64 SS G_CDS: 0.07 Total: -65.57 kcal Atomic # 8 Polarization: -44.86 SS G_CDS: -2.08 Total: -46.93 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 51.66 SS G_CDS: -0.66 Total: 51.00 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.87 -8.29 -41.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337854140.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.052 kcal (2) G-P(sol) polarization free energy of solvation -32.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds